RNA–Protein interactions for RNA: ENST00000585941.5

LIG3-205, Transcript of DNA ligase 3, humanhuman

TSL 1 (best)

Gene LIG3, Length 1,699 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-205ENST00000585941 PTPDC1A2A3K4 754 aa16.66■□□□□ 0.26
LIG3-205ENST00000585941 H3BQV1 296 aa16.66■□□□□ 0.26
LIG3-205ENST00000585941 JAK2O60674 1132 aa16.66■□□□□ 0.26
LIG3-205ENST00000585941 IFFO2Q5TF58 517 aa16.66■□□□□ 0.26
LIG3-205ENST00000585941 COL23A1Q86Y22 540 aaPredicted RBP16.66■□□□□ 0.26
LIG3-205ENST00000585941 SYAP1Q96A49 352 aaPredicted RBP16.66■□□□□ 0.26
LIG3-205ENST00000585941 ZSCAN16Q9H4T2 348 aaPredicted RBP16.66■□□□□ 0.26
LIG3-205ENST00000585941 GGA1Q9UJY5 639 aa16.66■□□□□ 0.26
LIG3-205ENST00000585941 ANKRD31Q8N7Z5 1873 aa16.66■□□□□ 0.26
LIG3-205ENST00000585941 SH2B2O14492 632 aaPredicted RBP16.65■□□□□ 0.26
LIG3-205ENST00000585941 PRKAB2O43741 272 aa16.65■□□□□ 0.26
LIG3-205ENST00000585941 LIFRP42702 1097 aa16.65■□□□□ 0.26
LIG3-205ENST00000585941 CCT2P78371 535 aaKnown RBP16.65■□□□□ 0.26
LIG3-205ENST00000585941 GPSM2P81274 684 aa16.65■□□□□ 0.26
LIG3-205ENST00000585941 MECOMQ03112 1051 aa16.65■□□□□ 0.26
LIG3-205ENST00000585941 CHAF1AQ13111 956 aaPredicted RBP16.65■□□□□ 0.26
LIG3-205ENST00000585941 SART3Q15020 963 aaKnown RBP16.65■□□□□ 0.26
LIG3-205ENST00000585941 CDC37L1Q7L3B6 337 aa16.65■□□□□ 0.26
LIG3-205ENST00000585941 ADGRA1Q86SQ6 560 aa16.65■□□□□ 0.26
LIG3-205ENST00000585941 USP48Q86UV5 1035 aa16.65■□□□□ 0.26
LIG3-205ENST00000585941 GPT2Q8TD30 523 aa16.65■□□□□ 0.26
LIG3-205ENST00000585941 GOLGA8BA8MQT2 603 aa16.65■□□□□ 0.26
LIG3-205ENST00000585941 B4E1Z4 1266 aa16.65■□□□□ 0.26
LIG3-205ENST00000585941 CTDNEP1O95476 244 aa16.65■□□□□ 0.26
LIG3-205ENST00000585941 KRT85P78386 507 aa16.65■□□□□ 0.26
LIG3-205ENST00000585941 GSTO1P78417 241 aa16.65■□□□□ 0.26
LIG3-205ENST00000585941 TXNRD3Q86VQ6 643 aa16.65■□□□□ 0.26
LIG3-205ENST00000585941 SGMS1Q86VZ5 419 aa16.65■□□□□ 0.26
LIG3-205ENST00000585941 CRNKL1Q9BZJ0 848 aaKnown RBP16.65■□□□□ 0.26
LIG3-205ENST00000585941 NSFL1CQ9UNZ2 370 aaKnown RBP16.65■□□□□ 0.26
LIG3-205ENST00000585941 NEDD4P46934 1319 aa16.64■□□□□ 0.25
LIG3-205ENST00000585941 UFL1O94874 794 aa16.64■□□□□ 0.25
LIG3-205ENST00000585941 MRE11P49959 708 aa16.64■□□□□ 0.25
LIG3-205ENST00000585941 ZNF445P59923 1031 aa16.64■□□□□ 0.25
LIG3-205ENST00000585941 UBE2HP62256 183 aa16.64■□□□□ 0.25
LIG3-205ENST00000585941 PPARAQ07869 468 aa16.64■□□□□ 0.25
LIG3-205ENST00000585941 CAVIN1Q6NZI2 390 aaKnown RBP16.64■□□□□ 0.25
LIG3-205ENST00000585941 CYB5R4Q7L1T6 521 aa16.64■□□□□ 0.25
LIG3-205ENST00000585941 DZIP1Q86YF9 867 aaKnown RBP16.64■□□□□ 0.25
LIG3-205ENST00000585941 CERS3Q8IU89 383 aa16.64■□□□□ 0.25
LIG3-205ENST00000585941 SP8Q8IXZ3 490 aa16.64■□□□□ 0.25
LIG3-205ENST00000585941 TMTC2Q8N394 836 aa16.64■□□□□ 0.25
LIG3-205ENST00000585941 CHAMP1Q96JM3 812 aa16.64■□□□□ 0.25
LIG3-205ENST00000585941 ATP8A2Q9NTI2 1148 aa16.64■□□□□ 0.25
LIG3-205ENST00000585941 BRPF3Q9ULD4 1205 aa16.64■□□□□ 0.25
LIG3-205ENST00000585941 CNPY2Q9Y2B0 182 aa16.64■□□□□ 0.25
LIG3-205ENST00000585941 CPLX1O14810 134 aa16.63■□□□□ 0.25
LIG3-205ENST00000585941 CDKL5O76039 1030 aa16.63■□□□□ 0.25
LIG3-205ENST00000585941 LDHBP07195 334 aaKnown RBP16.63■□□□□ 0.25
LIG3-205ENST00000585941 NPR1P16066 1061 aa16.63■□□□□ 0.25
LIG3-205ENST00000585941 PDE6BP35913 854 aa16.63■□□□□ 0.25
LIG3-205ENST00000585941 CTDSPL2Q05D32 466 aa16.63■□□□□ 0.25
LIG3-205ENST00000585941 FOXD4L6Q3SYB3 417 aaPredicted RBP16.63■□□□□ 0.25
LIG3-205ENST00000585941 CPLX2Q6PUV4 134 aaKnown RBP16.63■□□□□ 0.25
LIG3-205ENST00000585941 FOXD4L3Q6VB84 417 aaPredicted RBP16.63■□□□□ 0.25
LIG3-205ENST00000585941 IGDCC4Q8TDY8 1250 aa16.63■□□□□ 0.25
LIG3-205ENST00000585941 ZNF384Q8TF68 577 aa16.63■□□□□ 0.25
LIG3-205ENST00000585941 DDX11Q96FC9 970 aa16.63■□□□□ 0.25
LIG3-205ENST00000585941 SCAND2PQ9GZW5 306 aaPredicted RBP16.63■□□□□ 0.25
LIG3-205ENST00000585941 HPS5Q9UPZ3 1129 aa16.63■□□□□ 0.25
LIG3-205ENST00000585941 PARP3Q9Y6F1 533 aa16.63■□□□□ 0.25
LIG3-205ENST00000585941 ELP1O95163 1332 aa16.63■□□□□ 0.25
LIG3-205ENST00000585941 LDHCP07864 332 aa16.62■□□□□ 0.25
LIG3-205ENST00000585941 IL1R1P14778 569 aa16.62■□□□□ 0.25
LIG3-205ENST00000585941 ALDH1B1P30837 517 aa16.62■□□□□ 0.25
LIG3-205ENST00000585941 NT5C2P49902 561 aa16.62■□□□□ 0.25
LIG3-205ENST00000585941 DNM1Q05193 864 aaKnown RBP16.62■□□□□ 0.25
LIG3-205ENST00000585941 TMEM67Q5HYA8 995 aa16.62■□□□□ 0.25
LIG3-205ENST00000585941 KLHL34Q8N239 644 aa16.62■□□□□ 0.25
LIG3-205ENST00000585941 NCOA5Q9HCD5 579 aaKnown RBP16.62■□□□□ 0.25
LIG3-205ENST00000585941 GPHNQ9NQX3 736 aaPredicted RBP16.62■□□□□ 0.25
LIG3-205ENST00000585941 ZSWIM5Q9P217 1185 aa16.62■□□□□ 0.25
LIG3-205ENST00000585941 LTBP1Q14766 1721 aa16.62■□□□□ 0.25
LIG3-205ENST00000585941 ERICH2A1L162 156 aa16.62■□□□□ 0.25
LIG3-205ENST00000585941 PPEF1O14829 653 aaPredicted RBP16.62■□□□□ 0.25
LIG3-205ENST00000585941 IFIT3O14879 490 aaKnown RBP16.62■□□□□ 0.25
LIG3-205ENST00000585941 KDM4AO75164 1064 aa16.62■□□□□ 0.25
LIG3-205ENST00000585941 PRDX5P30044 214 aa16.62■□□□□ 0.25
LIG3-205ENST00000585941 RCAN1P53805 252 aa16.62■□□□□ 0.25
LIG3-205ENST00000585941 ZSCAN23Q3MJ62 389 aa16.62■□□□□ 0.25
LIG3-205ENST00000585941 SYNE3Q6ZMZ3 975 aa16.62■□□□□ 0.25
LIG3-205ENST00000585941 SDR42E1Q8WUS8 393 aa16.62■□□□□ 0.25
LIG3-205ENST00000585941 ESR2Q92731 530 aa16.62■□□□□ 0.25
LIG3-205ENST00000585941 ATP6V0A2Q9Y487 856 aa16.62■□□□□ 0.25
LIG3-205ENST00000585941 BAZ2AQ9UIF9 1905 aaKnown RBP16.61■□□□□ 0.25
LIG3-205ENST00000585941 SRGNP10124 158 aa16.61■□□□□ 0.25
LIG3-205ENST00000585941 DYNLL1P63167 89 aaKnown RBP16.61■□□□□ 0.25
LIG3-205ENST00000585941 ATL3Q6DD88 541 aa16.61■□□□□ 0.25
LIG3-205ENST00000585941 APOA5Q6Q788 366 aa16.61■□□□□ 0.25
LIG3-205ENST00000585941 NFXL1Q6ZNB6 911 aa16.61■□□□□ 0.25
LIG3-205ENST00000585941 LY9Q9HBG7 655 aa16.61■□□□□ 0.25
LIG3-205ENST00000585941 CD209Q9NNX6 404 aa16.61■□□□□ 0.25
LIG3-205ENST00000585941 LAMB1P07942 1786 aa16.61■□□□□ 0.25
LIG3-205ENST00000585941 QSER1Q2KHR3 1735 aa16.6■□□□□ 0.25
LIG3-205ENST00000585941 MYH15Q9Y2K3 1946 aa16.6■□□□□ 0.25
LIG3-205ENST00000585941 CCDC69A6NI79 296 aa16.6■□□□□ 0.25
LIG3-205ENST00000585941 MINDY4BA8MYZ0 360 aa16.6■□□□□ 0.25
LIG3-205ENST00000585941 ZBTB43O43298 467 aa16.6■□□□□ 0.25
LIG3-205ENST00000585941 FIBPO43427 364 aa16.6■□□□□ 0.25
LIG3-205ENST00000585941 SLC3A2P08195 630 aaKnown RBP16.6■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms