RNA–Protein interactions for RNA: ENST00000580958.5

SS18-217, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 775 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-217ENST00000580958 SALL1Q9NSC2 1324 aa12.5□□□□□ -0.41
SS18-217ENST00000580958 SCN9AQ15858 1988 aa12.49□□□□□ -0.41
SS18-217ENST00000580958 ZMYM6O95789 1325 aa12.49□□□□□ -0.41
SS18-217ENST00000580958 GSG1L2A8MUP6 293 aa12.49□□□□□ -0.41
SS18-217ENST00000580958 LARGE1O95461 756 aa12.49□□□□□ -0.41
SS18-217ENST00000580958 PRDX5P30044 214 aa12.49□□□□□ -0.41
SS18-217ENST00000580958 IFNL3Q8IZI9 196 aa12.49□□□□□ -0.41
SS18-217ENST00000580958 PLCD3Q8N3E9 789 aa12.49□□□□□ -0.41
SS18-217ENST00000580958 MYH1P12882 1939 aa12.49□□□□□ -0.41
SS18-217ENST00000580958 BRCA1P38398 1863 aaKnown RBP12.48□□□□□ -0.41
SS18-217ENST00000580958 PSME4Q14997 1843 aa12.48□□□□□ -0.41
SS18-217ENST00000580958 FOCADQ5VW36 1801 aa12.48□□□□□ -0.41
SS18-217ENST00000580958 ZNF213O14771 459 aa12.48□□□□□ -0.41
SS18-217ENST00000580958 LDHBP07195 334 aaKnown RBP12.48□□□□□ -0.41
SS18-217ENST00000580958 GNAT2P19087 354 aa12.48□□□□□ -0.41
SS18-217ENST00000580958 TOB2Q14106 344 aaPredicted RBP12.48□□□□□ -0.41
SS18-217ENST00000580958 GRIK5Q16478 980 aa12.48□□□□□ -0.41
SS18-217ENST00000580958 Q6ZUG5 572 aa12.48□□□□□ -0.41
SS18-217ENST00000580958 DZIP1Q86YF9 867 aaKnown RBP12.48□□□□□ -0.41
SS18-217ENST00000580958 ZSCAN31Q96LW9 406 aaPredicted RBP12.48□□□□□ -0.41
SS18-217ENST00000580958 RIOK1Q9BRS2 568 aaKnown RBP12.48□□□□□ -0.41
SS18-217ENST00000580958 NAPBQ9H115 298 aa12.48□□□□□ -0.41
SS18-217ENST00000580958 ADAMTSL1Q8N6G6 1762 aa12.48□□□□□ -0.41
SS18-217ENST00000580958 ECM29Q5VYK3 1845 aa12.47□□□□□ -0.41
SS18-217ENST00000580958 ZBTB7AO95365 584 aa12.47□□□□□ -0.41
SS18-217ENST00000580958 HMGB1P09429 215 aaKnown RBP12.47□□□□□ -0.41
SS18-217ENST00000580958 TDO2P48775 406 aa12.47□□□□□ -0.41
SS18-217ENST00000580958 NBR1Q14596 966 aa12.47□□□□□ -0.41
SS18-217ENST00000580958 ANKRD1Q15327 319 aa12.47□□□□□ -0.41
SS18-217ENST00000580958 DHX32Q7L7V1 743 aaKnown RBP12.47□□□□□ -0.41
SS18-217ENST00000580958 TBC1D10CQ8IV04 446 aa12.47□□□□□ -0.41
SS18-217ENST00000580958 INTS4Q96HW7 963 aaKnown RBP12.47□□□□□ -0.41
SS18-217ENST00000580958 EYA3Q99504 573 aa12.47□□□□□ -0.41
SS18-217ENST00000580958 ANP32EQ9BTT0 268 aa12.47□□□□□ -0.41
SS18-217ENST00000580958 LRRC2Q9BYS8 371 aa12.47□□□□□ -0.41
SS18-217ENST00000580958 NACAP1Q9BZK3 213 aa12.47□□□□□ -0.41
SS18-217ENST00000580958 ZC3H12CQ9C0D7 883 aaKnown RBP12.47□□□□□ -0.41
SS18-217ENST00000580958 NBPF3Q9H094 633 aa12.47□□□□□ -0.41
SS18-217ENST00000580958 CWC22Q9HCG8 908 aaKnown RBP12.47□□□□□ -0.41
SS18-217ENST00000580958 SH2B1Q9NRF2 756 aaPredicted RBP12.47□□□□□ -0.41
SS18-217ENST00000580958 TPCN1Q9ULQ1 816 aa12.47□□□□□ -0.41
SS18-217ENST00000580958 FAM205AQ6ZU69 1335 aa12.46□□□□□ -0.41
SS18-217ENST00000580958 IGSF3O75054 1194 aa12.46□□□□□ -0.41
SS18-217ENST00000580958 EXOSC10Q01780 885 aaKnown RBP12.46□□□□□ -0.41
SS18-217ENST00000580958 NFKBIBQ15653 356 aa12.46□□□□□ -0.41
SS18-217ENST00000580958 ME3Q16798 604 aa12.46□□□□□ -0.41
SS18-217ENST00000580958 DOK7Q18PE1 504 aa12.46□□□□□ -0.41
SS18-217ENST00000580958 TMED8Q6PL24 325 aaPredicted RBP12.46□□□□□ -0.41
SS18-217ENST00000580958 CCDC83Q8IWF9 413 aa12.46□□□□□ -0.41
SS18-217ENST00000580958 MB21D2Q8IYB1 491 aaPredicted RBP12.46□□□□□ -0.41
SS18-217ENST00000580958 SDR42E1Q8WUS8 393 aa12.46□□□□□ -0.41
SS18-217ENST00000580958 COA1Q9GZY4 146 aa12.46□□□□□ -0.41
SS18-217ENST00000580958 AATFQ9NY61 560 aaKnown RBP eCLIP12.46□□□□□ -0.41
SS18-217ENST00000580958 TCHHQ07283 1943 aa12.46□□□□□ -0.42
SS18-217ENST00000580958 DPEP1P16444 411 aa12.45□□□□□ -0.42
SS18-217ENST00000580958 GSTO1P78417 241 aa12.45□□□□□ -0.42
SS18-217ENST00000580958 FGD1P98174 961 aa12.45□□□□□ -0.42
SS18-217ENST00000580958 CTDSPL2Q05D32 466 aa12.45□□□□□ -0.42
SS18-217ENST00000580958 ST3GAL1Q11201 340 aa12.45□□□□□ -0.42
SS18-217ENST00000580958 CHST3Q7LGC8 479 aa12.45□□□□□ -0.42
SS18-217ENST00000580958 RALYLQ86SE5 291 aaKnown RBP12.45□□□□□ -0.42
SS18-217ENST00000580958 NECAB1Q8N987 351 aa12.45□□□□□ -0.42
SS18-217ENST00000580958 NCOA7Q8NI08 942 aa12.45□□□□□ -0.42
SS18-217ENST00000580958 C7orf43Q8WVR3 580 aa12.45□□□□□ -0.42
SS18-217ENST00000580958 UPF1Q92900 1129 aaKnown RBP eCLIP12.45□□□□□ -0.42
SS18-217ENST00000580958 FBXW7Q969H0 707 aa12.45□□□□□ -0.42
SS18-217ENST00000580958 SNED1Q8TER0 1413 aa12.45□□□□□ -0.42
SS18-217ENST00000580958 G3V3G9 751 aa12.44□□□□□ -0.42
SS18-217ENST00000580958 LDHCP07864 332 aa12.44□□□□□ -0.42
SS18-217ENST00000580958 GTF2IP78347 998 aa12.44□□□□□ -0.42
SS18-217ENST00000580958 R3HDM1Q15032 1099 aaKnown RBP12.44□□□□□ -0.42
SS18-217ENST00000580958 RAB3GAP1Q15042 981 aa12.44□□□□□ -0.42
SS18-217ENST00000580958 DIXDC1Q155Q3 683 aa12.44□□□□□ -0.42
SS18-217ENST00000580958 MFSD14BQ5SR56 506 aa12.44□□□□□ -0.42
SS18-217ENST00000580958 DCAF8Q5TAQ9 597 aa12.44□□□□□ -0.42
SS18-217ENST00000580958 TBC1D22AQ8WUA7 517 aa12.44□□□□□ -0.42
SS18-217ENST00000580958 BRF1Q92994 677 aa12.44□□□□□ -0.42
SS18-217ENST00000580958 CRNKL1Q9BZJ0 848 aaKnown RBP12.44□□□□□ -0.42
SS18-217ENST00000580958 TACC3Q9Y6A5 838 aa12.44□□□□□ -0.42
SS18-217ENST00000580958 MYH8P13535 1937 aa12.44□□□□□ -0.42
SS18-217ENST00000580958 MROH7-TTC4A0A0A0MT08 1334 aa12.43□□□□□ -0.42
SS18-217ENST00000580958 NEDD4P46934 1319 aa12.43□□□□□ -0.42
SS18-217ENST00000580958 DDX60LQ5H9U9 1706 aaKnown RBP12.43□□□□□ -0.42
SS18-217ENST00000580958 FER1L6Q2WGJ9 1857 aa12.43□□□□□ -0.42
SS18-217ENST00000580958 PRC1O43663 620 aa12.43□□□□□ -0.42
SS18-217ENST00000580958 POLD1P28340 1107 aa12.43□□□□□ -0.42
SS18-217ENST00000580958 MCM5P33992 734 aa12.43□□□□□ -0.42
SS18-217ENST00000580958 ANTXR2P58335 489 aa12.43□□□□□ -0.42
SS18-217ENST00000580958 NUCB2P80303 420 aa12.43□□□□□ -0.42
SS18-217ENST00000580958 APOBRQ0VD83 1088 aa12.43□□□□□ -0.42
SS18-217ENST00000580958 TRDNQ13061 729 aa12.43□□□□□ -0.42
SS18-217ENST00000580958 STK3Q13188 491 aa12.43□□□□□ -0.42
SS18-217ENST00000580958 CC2D2BQ6DHV5 1058 aa12.43□□□□□ -0.42
SS18-217ENST00000580958 TTLL6Q8N841 843 aa12.43□□□□□ -0.42
SS18-217ENST00000580958 NKX2-3Q8TAU0 364 aa12.43□□□□□ -0.42
SS18-217ENST00000580958 TNPO1Q92973 898 aaKnown RBP12.43□□□□□ -0.42
SS18-217ENST00000580958 RTFDC1Q9BY42 306 aaPredicted RBP12.43□□□□□ -0.42
SS18-217ENST00000580958 MTFR1LQ9H019 292 aa12.43□□□□□ -0.42
SS18-217ENST00000580958 DBNDD1Q9H9R9 158 aa12.43□□□□□ -0.42
SS18-217ENST00000580958 INCENPQ9NQS7 918 aa12.43□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 96.1 ms