RNA–Protein interactions for RNA: ENST00000580642.2

SS18-215, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-215ENST00000580642 GRIK5Q16478 980 aa18.21■□□□□ 0.51
SS18-215ENST00000580642 IMMTQ16891 758 aaKnown RBP18.21■□□□□ 0.51
SS18-215ENST00000580642 VPS53Q5VIR6 699 aa18.21■□□□□ 0.51
SS18-215ENST00000580642 MIGA1Q8NAN2 632 aa18.21■□□□□ 0.51
SS18-215ENST00000580642 KIF2CQ99661 725 aa18.21■□□□□ 0.51
SS18-215ENST00000580642 KCNQ5Q9NR82 932 aa18.21■□□□□ 0.51
SS18-215ENST00000580642 CHD4Q14839 1912 aa18.21■□□□□ 0.51
SS18-215ENST00000580642 GSG1L2A8MUP6 293 aa18.2■□□□□ 0.5
SS18-215ENST00000580642 PSMD14O00487 310 aa18.2■□□□□ 0.5
SS18-215ENST00000580642 FOXP2O15409 715 aa18.2■□□□□ 0.5
SS18-215ENST00000580642 CXCL9Q07325 125 aa18.2■□□□□ 0.5
SS18-215ENST00000580642 IFNL3Q8IZI9 196 aa18.2■□□□□ 0.5
SS18-215ENST00000580642 OGFOD1Q8N543 542 aa18.2■□□□□ 0.5
SS18-215ENST00000580642 DAGLAQ9Y4D2 1042 aa18.2■□□□□ 0.5
SS18-215ENST00000580642 SNX14Q9Y5W7 946 aa18.2■□□□□ 0.5
SS18-215ENST00000580642 PSME4Q14997 1843 aa18.2■□□□□ 0.5
SS18-215ENST00000580642 MYO5AQ9Y4I1 1855 aaKnown RBP18.2■□□□□ 0.5
SS18-215ENST00000580642 COL4A5P29400 1685 aa18.19■□□□□ 0.5
SS18-215ENST00000580642 ZNF213O14771 459 aa18.19■□□□□ 0.5
SS18-215ENST00000580642 NPM3O75607 178 aaKnown RBP18.19■□□□□ 0.5
SS18-215ENST00000580642 APPP05067 770 aa18.19■□□□□ 0.5
SS18-215ENST00000580642 HMGB1P09429 215 aaKnown RBP18.19■□□□□ 0.5
SS18-215ENST00000580642 PCP11498 1178 aaKnown RBP18.19■□□□□ 0.5
SS18-215ENST00000580642 BTDP43251 543 aa18.19■□□□□ 0.5
SS18-215ENST00000580642 CRKP46108 304 aa18.19■□□□□ 0.5
SS18-215ENST00000580642 DIXDC1Q155Q3 683 aa18.19■□□□□ 0.5
SS18-215ENST00000580642 MTMR14Q8NCE2 650 aa18.19■□□□□ 0.5
SS18-215ENST00000580642 DPF2Q92785 391 aa18.19■□□□□ 0.5
SS18-215ENST00000580642 NAPBQ9H115 298 aa18.19■□□□□ 0.5
SS18-215ENST00000580642 AATFQ9NY61 560 aaKnown RBP eCLIP18.19■□□□□ 0.5
SS18-215ENST00000580642 TAOK2Q9UL54 1235 aa18.19■□□□□ 0.5
SS18-215ENST00000580642 RAD17O75943 681 aa18.18■□□□□ 0.5
SS18-215ENST00000580642 SBK1Q52WX2 424 aa18.18■□□□□ 0.5
SS18-215ENST00000580642 KIAA0825Q8IV33 1275 aa18.18■□□□□ 0.5
SS18-215ENST00000580642 ZC3H4Q9UPT8 1303 aaKnown RBP18.18■□□□□ 0.5
SS18-215ENST00000580642 SCN9AQ15858 1988 aa18.17■□□□□ 0.5
SS18-215ENST00000580642 CYP21A2P08686 494 aa18.17■□□□□ 0.5
SS18-215ENST00000580642 USP17L8P0C7I0 530 aa18.17■□□□□ 0.5
SS18-215ENST00000580642 TDO2P48775 406 aa18.17■□□□□ 0.5
SS18-215ENST00000580642 MCM2P49736 904 aa18.17■□□□□ 0.5
SS18-215ENST00000580642 RHBDL3P58872 404 aa18.17■□□□□ 0.5
SS18-215ENST00000580642 DYNLL1P63167 89 aaKnown RBP18.17■□□□□ 0.5
SS18-215ENST00000580642 RASSF7Q02833 373 aa18.17■□□□□ 0.5
SS18-215ENST00000580642 SNX21Q969T3 373 aa18.17■□□□□ 0.5
SS18-215ENST00000580642 ARPP21Q9UBL0 812 aaPredicted RBP18.17■□□□□ 0.5
SS18-215ENST00000580642 ANAPC4Q9UJX5 808 aa18.17■□□□□ 0.5
SS18-215ENST00000580642 PALD1Q9ULE6 856 aa18.17■□□□□ 0.5
SS18-215ENST00000580642 ST18O60284 1047 aa18.16■□□□□ 0.5
SS18-215ENST00000580642 YBX3P16989 372 aaKnown RBP eCLIP18.16■□□□□ 0.5
SS18-215ENST00000580642 APOBEC3HQ6NTF7 200 aaKnown RBP18.16■□□□□ 0.5
SS18-215ENST00000580642 AMOTL1Q8IY63 956 aa18.16■□□□□ 0.5
SS18-215ENST00000580642 RASEFQ8IZ41 740 aa18.16■□□□□ 0.5
SS18-215ENST00000580642 MXD3Q9BW11 206 aa18.16■□□□□ 0.5
SS18-215ENST00000580642 RNF41Q9H4P4 317 aaPredicted RBP18.16■□□□□ 0.5
SS18-215ENST00000580642 ZSWIM6Q9HCJ5 1215 aa18.16■□□□□ 0.5
SS18-215ENST00000580642 EPB41L4AQ9HCS5 686 aaPredicted RBP18.16■□□□□ 0.5
SS18-215ENST00000580642 DCP1AQ9NPI6 582 aaPredicted RBP18.16■□□□□ 0.5
SS18-215ENST00000580642 MKRN1Q9UHC7 482 aaKnown RBP18.16■□□□□ 0.5
SS18-215ENST00000580642 ZNF646O15015 1829 aaPredicted RBP18.16■□□□□ 0.5
SS18-215ENST00000580642 F8W031 263 aaPredicted RBP18.15■□□□□ 0.5
SS18-215ENST00000580642 PRELPP51888 382 aa18.15■□□□□ 0.5
SS18-215ENST00000580642 ZNF280AP59817 542 aaPredicted RBP18.15■□□□□ 0.5
SS18-215ENST00000580642 BECN1Q14457 450 aa18.15■□□□□ 0.5
SS18-215ENST00000580642 TEX11Q8IYF3 940 aa18.15■□□□□ 0.5
SS18-215ENST00000580642 SH3RF3Q8TEJ3 882 aaPredicted RBP18.15■□□□□ 0.5
SS18-215ENST00000580642 PRKAB2O43741 272 aa18.14■□□□□ 0.49
SS18-215ENST00000580642 SLC3A2P08195 630 aaKnown RBP18.14■□□□□ 0.49
SS18-215ENST00000580642 USP5P45974 858 aa18.14■□□□□ 0.49
SS18-215ENST00000580642 GPC2Q8N158 579 aa18.14■□□□□ 0.49
SS18-215ENST00000580642 ALDH8A1Q9H2A2 487 aaPredicted RBP18.14■□□□□ 0.49
SS18-215ENST00000580642 CNNM2Q9H8M5 875 aa18.14■□□□□ 0.49
SS18-215ENST00000580642 CYP46A1Q9Y6A2 500 aa18.14■□□□□ 0.49
SS18-215ENST00000580642 SCNN1DP51172 638 aa18.13■□□□□ 0.49
SS18-215ENST00000580642 GPR162Q16538 588 aa18.13■□□□□ 0.49
SS18-215ENST00000580642 FKBP1CQ5VVH2 108 aa18.13■□□□□ 0.49
SS18-215ENST00000580642 SDR42E1Q8WUS8 393 aa18.13■□□□□ 0.49
SS18-215ENST00000580642 NEK1Q96PY6 1258 aa18.13■□□□□ 0.49
SS18-215ENST00000580642 IDI2Q9BXS1 227 aa18.13■□□□□ 0.49
SS18-215ENST00000580642 USP40Q9NVE5 1235 aa18.13■□□□□ 0.49
SS18-215ENST00000580642 WDR19Q8NEZ3 1342 aa18.13■□□□□ 0.49
SS18-215ENST00000580642 MYH2Q9UKX2 1941 aa18.13■□□□□ 0.49
SS18-215ENST00000580642 TRDNQ13061 729 aa18.12■□□□□ 0.49
SS18-215ENST00000580642 DLGAP5Q15398 846 aa18.12■□□□□ 0.49
SS18-215ENST00000580642 CFAP100Q494V2 611 aa18.12■□□□□ 0.49
SS18-215ENST00000580642 CDC42EP5Q6NZY7 148 aa18.12■□□□□ 0.49
SS18-215ENST00000580642 BLOC1S2Q6QNY1 142 aa18.12■□□□□ 0.49
SS18-215ENST00000580642 RUFY3Q7L099 469 aa18.12■□□□□ 0.49
SS18-215ENST00000580642 FBXL16Q8N461 479 aa18.12■□□□□ 0.49
SS18-215ENST00000580642 JAKMIP1Q96N16 626 aaKnown RBP18.12■□□□□ 0.49
SS18-215ENST00000580642 MTA3Q9BTC8 594 aa18.12■□□□□ 0.49
SS18-215ENST00000580642 SPDYE2BA6NHP3 402 aa18.11■□□□□ 0.49
SS18-215ENST00000580642 E7EWF7 191 aa18.11■□□□□ 0.49
SS18-215ENST00000580642 FGRP09769 529 aa18.11■□□□□ 0.49
SS18-215ENST00000580642 SPDYE6P0CI01 402 aa18.11■□□□□ 0.49
SS18-215ENST00000580642 NEK4P51957 841 aa18.11■□□□□ 0.49
SS18-215ENST00000580642 RBM5P52756 815 aaKnown RBP eCLIP18.11■□□□□ 0.49
SS18-215ENST00000580642 PPARAQ07869 468 aa18.11■□□□□ 0.49
SS18-215ENST00000580642 ANKRD1Q15327 319 aa18.11■□□□□ 0.49
SS18-215ENST00000580642 CTR9Q6PD62 1173 aa18.11■□□□□ 0.49
SS18-215ENST00000580642 NCOA7Q8NI08 942 aa18.11■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 60.2 ms