RNA–Protein interactions for RNA: ENST00000580569.1

RFFL-207, Transcript of ring finger and FYVE like domain containing E3 ubiquitin protein ligase, humanhuman

TSL 5

Gene RFFL, Length 570 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFFL-207ENST00000580569 LMOD1P29536 600 aaPredicted RBP9.48□□□□□ -0.89
RFFL-207ENST00000580569 MCM4P33991 863 aa9.48□□□□□ -0.89
RFFL-207ENST00000580569 DEKP35659 375 aaKnown RBP9.48□□□□□ -0.89
RFFL-207ENST00000580569 PTH1RQ03431 593 aa9.48□□□□□ -0.89
RFFL-207ENST00000580569 NECTIN1Q15223 517 aa9.48□□□□□ -0.89
RFFL-207ENST00000580569 GRIPAP1Q4V328 841 aa9.48□□□□□ -0.89
RFFL-207ENST00000580569 CWC27Q6UX04 472 aaKnown RBP9.48□□□□□ -0.89
RFFL-207ENST00000580569 TPTE2Q6XPS3 522 aa9.48□□□□□ -0.89
RFFL-207ENST00000580569 NBPF5PQ86XG9 351 aaPredicted RBP9.48□□□□□ -0.89
RFFL-207ENST00000580569 TICAM2Q86XR7 235 aa9.48□□□□□ -0.89
RFFL-207ENST00000580569 DZIP3Q86Y13 1208 aaKnown RBP9.48□□□□□ -0.89
RFFL-207ENST00000580569 NLRP7Q8WX94 980 aa9.48□□□□□ -0.89
RFFL-207ENST00000580569 RUFY2Q8WXA3 655 aa9.48□□□□□ -0.89
RFFL-207ENST00000580569 ZNF594Q96JF6 807 aaPredicted RBP9.48□□□□□ -0.89
RFFL-207ENST00000580569 TTC14Q96N46 770 aa9.48□□□□□ -0.89
RFFL-207ENST00000580569 GNL3Q9BVP2 549 aaKnown RBP eCLIP9.48□□□□□ -0.89
RFFL-207ENST00000580569 PLSCR2Q9NRY7 297 aa9.48□□□□□ -0.89
RFFL-207ENST00000580569 FAM217BQ9NTX9 383 aaPredicted RBP9.48□□□□□ -0.89
RFFL-207ENST00000580569 ZNF652Q9Y2D9 606 aa9.48□□□□□ -0.89
RFFL-207ENST00000580569 SNX14Q9Y5W7 946 aa9.48□□□□□ -0.89
RFFL-207ENST00000580569 UBN2Q6ZU65 1347 aa9.48□□□□□ -0.89
RFFL-207ENST00000580569 MAP3K7O43318 606 aa9.47□□□□□ -0.89
RFFL-207ENST00000580569 AOC2O75106 756 aa9.47□□□□□ -0.89
RFFL-207ENST00000580569 MCM2P49736 904 aa9.47□□□□□ -0.89
RFFL-207ENST00000580569 ATN1P54259 1190 aaPredicted RBP9.47□□□□□ -0.89
RFFL-207ENST00000580569 EIF6P56537 245 aaKnown RBP9.47□□□□□ -0.89
RFFL-207ENST00000580569 FMR1Q06787 632 aaKnown RBP eCLIP9.47□□□□□ -0.89
RFFL-207ENST00000580569 NMIQ13287 307 aaPredicted RBP9.47□□□□□ -0.89
RFFL-207ENST00000580569 CRY2Q49AN0 593 aa9.47□□□□□ -0.89
RFFL-207ENST00000580569 MYSM1Q5VVJ2 828 aa9.47□□□□□ -0.89
RFFL-207ENST00000580569 OLFM4Q6UX06 510 aa9.47□□□□□ -0.89
RFFL-207ENST00000580569 PPIL4Q8WUA2 492 aaKnown RBP eCLIP9.47□□□□□ -0.89
RFFL-207ENST00000580569 MAP4K1Q92918 833 aa9.47□□□□□ -0.89
RFFL-207ENST00000580569 TNPO1Q92973 898 aaKnown RBP9.47□□□□□ -0.89
RFFL-207ENST00000580569 FAM89AQ96GI7 184 aa9.47□□□□□ -0.89
RFFL-207ENST00000580569 FAM227BQ96M60 508 aa9.47□□□□□ -0.89
RFFL-207ENST00000580569 PUS3Q9BZE2 481 aaKnown RBP9.47□□□□□ -0.89
RFFL-207ENST00000580569 TSKSQ9UJT2 592 aa9.47□□□□□ -0.89
RFFL-207ENST00000580569 ZNF330Q9Y3S2 320 aaPredicted RBP9.47□□□□□ -0.89
RFFL-207ENST00000580569 CCDC171Q6TFL3 1326 aa9.47□□□□□ -0.89
RFFL-207ENST00000580569 COL4A1P02462 1669 aa9.46□□□□□ -0.89
RFFL-207ENST00000580569 A0A0D9SFI3 127 aa9.46□□□□□ -0.9
RFFL-207ENST00000580569 TRAF5O00463 557 aa9.46□□□□□ -0.9
RFFL-207ENST00000580569 EPS15P42566 896 aa9.46□□□□□ -0.9
RFFL-207ENST00000580569 NEK4P51957 841 aa9.46□□□□□ -0.9
RFFL-207ENST00000580569 DGKZQ13574 1117 aa9.46□□□□□ -0.9
RFFL-207ENST00000580569 RETREG2Q8NC44 543 aa9.46□□□□□ -0.9
RFFL-207ENST00000580569 TTLL11Q8NHH1 800 aa9.46□□□□□ -0.9
RFFL-207ENST00000580569 EDC3Q96F86 508 aaKnown RBP9.46□□□□□ -0.9
RFFL-207ENST00000580569 TM6SF1Q9BZW5 370 aa9.46□□□□□ -0.9
RFFL-207ENST00000580569 DIAPH3Q9NSV4 1193 aa9.46□□□□□ -0.9
RFFL-207ENST00000580569 PGAP2Q9UHJ9 254 aa9.46□□□□□ -0.9
RFFL-207ENST00000580569 RIPOR2Q9Y4F9 1068 aa9.46□□□□□ -0.9
RFFL-207ENST00000580569 RPAP1Q9BWH6 1393 aaPredicted RBP9.46□□□□□ -0.9
RFFL-207ENST00000580569 MYH13Q9UKX3 1938 aa9.46□□□□□ -0.9
RFFL-207ENST00000580569 MYH15Q9Y2K3 1946 aa9.46□□□□□ -0.9
RFFL-207ENST00000580569 GPTP24298 496 aa9.45□□□□□ -0.9
RFFL-207ENST00000580569 TIMM10P62072 90 aa9.45□□□□□ -0.9
RFFL-207ENST00000580569 GRM1Q13255 1194 aa9.45□□□□□ -0.9
RFFL-207ENST00000580569 PRPF38BQ5VTL8 546 aaKnown RBP9.45□□□□□ -0.9
RFFL-207ENST00000580569 ZGPATQ8N5A5 531 aaKnown RBP9.45□□□□□ -0.9
RFFL-207ENST00000580569 VGLL2Q8N8G2 317 aa9.45□□□□□ -0.9
RFFL-207ENST00000580569 TMX3Q96JJ7 454 aa9.45□□□□□ -0.9
RFFL-207ENST00000580569 CWC22Q9HCG8 908 aaKnown RBP9.45□□□□□ -0.9
RFFL-207ENST00000580569 ADARB2Q9NS39 739 aaKnown RBP9.45□□□□□ -0.9
RFFL-207ENST00000580569 ZDHHC9Q9Y397 364 aa9.45□□□□□ -0.9
RFFL-207ENST00000580569 GJA3Q9Y6H8 435 aa9.45□□□□□ -0.9
RFFL-207ENST00000580569 A0A1B0GUL7 405 aa9.44□□□□□ -0.9
RFFL-207ENST00000580569 PDE8AO60658 829 aa9.44□□□□□ -0.9
RFFL-207ENST00000580569 TAF5LO75529 589 aa9.44□□□□□ -0.9
RFFL-207ENST00000580569 HOXA10P31260 410 aaPredicted RBP9.44□□□□□ -0.9
RFFL-207ENST00000580569 CLK2P49760 499 aaKnown RBP9.44□□□□□ -0.9
RFFL-207ENST00000580569 CTSWP56202 376 aa9.44□□□□□ -0.9
RFFL-207ENST00000580569 NOGQ13253 232 aa9.44□□□□□ -0.9
RFFL-207ENST00000580569 TSR1Q2NL82 804 aaKnown RBP9.44□□□□□ -0.9
RFFL-207ENST00000580569 CCDC57Q2TAC2 916 aa9.44□□□□□ -0.9
RFFL-207ENST00000580569 TSGA10IPQ3SY00 556 aa9.44□□□□□ -0.9
RFFL-207ENST00000580569 KIAA1211Q6ZU35 1233 aa9.44□□□□□ -0.9
RFFL-207ENST00000580569 ZNF589Q86UQ0 364 aaPredicted RBP9.44□□□□□ -0.9
RFFL-207ENST00000580569 KBTBD3Q8NAB2 608 aa9.44□□□□□ -0.9
RFFL-207ENST00000580569 INTS4Q96HW7 963 aaKnown RBP9.44□□□□□ -0.9
RFFL-207ENST00000580569 FSD1Q9BTV5 496 aa9.44□□□□□ -0.9
RFFL-207ENST00000580569 VPS33BQ9H267 617 aa9.44□□□□□ -0.9
RFFL-207ENST00000580569 ZSWIM6Q9HCJ5 1215 aa9.44□□□□□ -0.9
RFFL-207ENST00000580569 GPRC5DQ9NZD1 345 aa9.44□□□□□ -0.9
RFFL-207ENST00000580569 NIP7Q9Y221 180 aaKnown RBP eCLIP9.44□□□□□ -0.9
RFFL-207ENST00000580569 CHMP3Q9Y3E7 222 aa9.44□□□□□ -0.9
RFFL-207ENST00000580569 RBM8AQ9Y5S9 174 aaKnown RBP9.44□□□□□ -0.9
RFFL-207ENST00000580569 RTL9Q8NET4 1388 aa9.43□□□□□ -0.9
RFFL-207ENST00000580569 ABCC12Q96J65 1359 aa9.43□□□□□ -0.9
RFFL-207ENST00000580569 SH3TC1Q8TE82 1336 aa9.43□□□□□ -0.9
RFFL-207ENST00000580569 IRS4O14654 1257 aaPredicted RBP9.43□□□□□ -0.9
RFFL-207ENST00000580569 CELF2O95319 508 aaKnown RBP9.43□□□□□ -0.9
RFFL-207ENST00000580569 RFC5P40937 340 aa9.43□□□□□ -0.9
RFFL-207ENST00000580569 ADCK5Q3MIX3 580 aa9.43□□□□□ -0.9
RFFL-207ENST00000580569 SUSD4Q5VX71 490 aa9.43□□□□□ -0.9
RFFL-207ENST00000580569 CREB3L3Q68CJ9 461 aa9.43□□□□□ -0.9
RFFL-207ENST00000580569 CIAPIN1Q6FI81 312 aa9.43□□□□□ -0.9
RFFL-207ENST00000580569 METTL3Q86U44 580 aaKnown RBP9.43□□□□□ -0.9
RFFL-207ENST00000580569 LARGE2Q8N3Y3 721 aa9.43□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms