RNA–Protein interactions for RNA: ENST00000578954.5

SS18-211, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 756 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-211ENST00000578954 ZDHHC15Q96MV8 337 aa19.33■□□□□ 0.68
SS18-211ENST00000578954 AATFQ9NY61 560 aaKnown RBP eCLIP19.33■□□□□ 0.68
SS18-211ENST00000578954 ZC3H4Q9UPT8 1303 aaKnown RBP19.32■□□□□ 0.68
SS18-211ENST00000578954 BTDP43251 543 aa19.32■□□□□ 0.68
SS18-211ENST00000578954 RHBDL3P58872 404 aa19.32■□□□□ 0.68
SS18-211ENST00000578954 NECTIN1Q15223 517 aa19.32■□□□□ 0.68
SS18-211ENST00000578954 DPF2Q92785 391 aa19.32■□□□□ 0.68
SS18-211ENST00000578954 KCNB2Q92953 911 aa19.32■□□□□ 0.68
SS18-211ENST00000578954 RNF181Q9P0P0 153 aa19.32■□□□□ 0.68
SS18-211ENST00000578954 RBM8AQ9Y5S9 174 aaKnown RBP19.32■□□□□ 0.68
SS18-211ENST00000578954 U3KPZ7 1027 aaPredicted RBP19.32■□□□□ 0.68
SS18-211ENST00000578954 ADAMTSL1Q8N6G6 1762 aa19.32■□□□□ 0.68
SS18-211ENST00000578954 PATL2C9JE40 543 aaKnown RBP19.31■□□□□ 0.68
SS18-211ENST00000578954 PLCG2P16885 1265 aa19.31■□□□□ 0.68
SS18-211ENST00000578954 SCNN1DP51172 638 aa19.31■□□□□ 0.68
SS18-211ENST00000578954 C9orf131Q5VYM1 1079 aa19.31■□□□□ 0.68
SS18-211ENST00000578954 GIMAP6Q6P9H5 292 aa19.31■□□□□ 0.68
SS18-211ENST00000578954 MTMR14Q8NCE2 650 aa19.31■□□□□ 0.68
SS18-211ENST00000578954 NOL10Q9BSC4 688 aaKnown RBP19.31■□□□□ 0.68
SS18-211ENST00000578954 ZBTB12Q9Y330 459 aaPredicted RBP19.31■□□□□ 0.68
SS18-211ENST00000578954 GSG1L2A8MUP6 293 aa19.3■□□□□ 0.68
SS18-211ENST00000578954 ZNF280AP59817 542 aaPredicted RBP19.3■□□□□ 0.68
SS18-211ENST00000578954 APOBEC3HQ6NTF7 200 aaKnown RBP19.3■□□□□ 0.68
SS18-211ENST00000578954 CRNKL1Q9BZJ0 848 aaKnown RBP19.3■□□□□ 0.68
SS18-211ENST00000578954 EPB41L4AQ9HCS5 686 aaPredicted RBP19.3■□□□□ 0.68
SS18-211ENST00000578954 HDAC9Q9UKV0 1011 aa19.3■□□□□ 0.68
SS18-211ENST00000578954 PRKAB2O43741 272 aa19.29■□□□□ 0.68
SS18-211ENST00000578954 USP17L8P0C7I0 530 aa19.29■□□□□ 0.68
SS18-211ENST00000578954 MCCP23508 829 aa19.29■□□□□ 0.68
SS18-211ENST00000578954 ANAPC15P60006 121 aa19.29■□□□□ 0.68
SS18-211ENST00000578954 GPC2Q8N158 579 aa19.29■□□□□ 0.68
SS18-211ENST00000578954 SLC4A4Q9Y6R1 1079 aa19.29■□□□□ 0.68
SS18-211ENST00000578954 CDK5RAP2Q96SN8 1893 aa19.28■□□□□ 0.68
SS18-211ENST00000578954 FGAP02671 866 aa19.28■□□□□ 0.68
SS18-211ENST00000578954 CFAP100Q494V2 611 aa19.28■□□□□ 0.68
SS18-211ENST00000578954 IFNL3Q8IZI9 196 aa19.28■□□□□ 0.68
SS18-211ENST00000578954 OGFOD1Q8N543 542 aa19.28■□□□□ 0.68
SS18-211ENST00000578954 SH3RF3Q8TEJ3 882 aaPredicted RBP19.28■□□□□ 0.68
SS18-211ENST00000578954 ZBED3Q96IU2 234 aaPredicted RBP19.28■□□□□ 0.68
SS18-211ENST00000578954 ATP8A2Q9NTI2 1148 aa19.28■□□□□ 0.68
SS18-211ENST00000578954 MKRN1Q9UHC7 482 aaKnown RBP19.28■□□□□ 0.68
SS18-211ENST00000578954 CTNNA3Q9UI47 895 aa19.28■□□□□ 0.68
SS18-211ENST00000578954 FOCADQ5VW36 1801 aa19.28■□□□□ 0.68
SS18-211ENST00000578954 GMPSP49915 693 aaPredicted RBP19.27■□□□□ 0.68
SS18-211ENST00000578954 TSGA10IPQ3SY00 556 aa19.27■□□□□ 0.68
SS18-211ENST00000578954 CREB3L3Q68CJ9 461 aa19.27■□□□□ 0.68
SS18-211ENST00000578954 KIF2CQ99661 725 aa19.27■□□□□ 0.68
SS18-211ENST00000578954 NACAP1Q9BZK3 213 aa19.27■□□□□ 0.68
SS18-211ENST00000578954 DDX60LQ5H9U9 1706 aaKnown RBP19.27■□□□□ 0.68
SS18-211ENST00000578954 LAMA4Q16363 1823 aa19.27■□□□□ 0.68
SS18-211ENST00000578954 ECM29Q5VYK3 1845 aa19.26■□□□□ 0.67
SS18-211ENST00000578954 SPDYE2BA6NHP3 402 aa19.26■□□□□ 0.67
SS18-211ENST00000578954 SLC27A2O14975 620 aa19.26■□□□□ 0.67
SS18-211ENST00000578954 SPDYE6P0CI01 402 aa19.26■□□□□ 0.67
SS18-211ENST00000578954 CDC42EP5Q6NZY7 148 aa19.26■□□□□ 0.67
SS18-211ENST00000578954 SDR42E1Q8WUS8 393 aa19.26■□□□□ 0.67
SS18-211ENST00000578954 DCP1AQ9NPI6 582 aaPredicted RBP19.26■□□□□ 0.67
SS18-211ENST00000578954 PALD1Q9ULE6 856 aa19.26■□□□□ 0.67
SS18-211ENST00000578954 GJA3Q9Y6H8 435 aa19.26■□□□□ 0.67
SS18-211ENST00000578954 NPM3O75607 178 aaKnown RBP19.25■□□□□ 0.67
SS18-211ENST00000578954 CYP21A2P08686 494 aa19.25■□□□□ 0.67
SS18-211ENST00000578954 RNF20Q5VTR2 975 aa19.25■□□□□ 0.67
SS18-211ENST00000578954 TEX11Q8IYF3 940 aa19.25■□□□□ 0.67
SS18-211ENST00000578954 NAPBQ9H115 298 aa19.25■□□□□ 0.67
SS18-211ENST00000578954 PCDHAC2Q9Y5I4 1007 aa19.25■□□□□ 0.67
SS18-211ENST00000578954 NAV1Q8NEY1 1877 aa19.24■□□□□ 0.67
SS18-211ENST00000578954 WDHD1O75717 1129 aaPredicted RBP19.24■□□□□ 0.67
SS18-211ENST00000578954 APPP05067 770 aa19.24■□□□□ 0.67
SS18-211ENST00000578954 DLGAP5Q15398 846 aa19.24■□□□□ 0.67
SS18-211ENST00000578954 RASEFQ8IZ41 740 aa19.24■□□□□ 0.67
SS18-211ENST00000578954 IDI2Q9BXS1 227 aa19.24■□□□□ 0.67
SS18-211ENST00000578954 USP40Q9NVE5 1235 aa19.24■□□□□ 0.67
SS18-211ENST00000578954 SNX14Q9Y5W7 946 aa19.24■□□□□ 0.67
SS18-211ENST00000578954 SBK1Q52WX2 424 aa19.23■□□□□ 0.67
SS18-211ENST00000578954 MICALL2Q8IY33 904 aa19.23■□□□□ 0.67
SS18-211ENST00000578954 PRMT6Q96LA8 375 aaPredicted RBP19.23■□□□□ 0.67
SS18-211ENST00000578954 MYOZ2Q9NPC6 264 aa19.23■□□□□ 0.67
SS18-211ENST00000578954 GPRC5DQ9NZD1 345 aa19.23■□□□□ 0.67
SS18-211ENST00000578954 CNOT7Q9UIV1 285 aaKnown RBP19.23■□□□□ 0.67
SS18-211ENST00000578954 FLT1P17948 1338 aa19.23■□□□□ 0.67
SS18-211ENST00000578954 LAMB1P07942 1786 aa19.22■□□□□ 0.67
SS18-211ENST00000578954 BAZ2AQ9UIF9 1905 aaKnown RBP19.22■□□□□ 0.67
SS18-211ENST00000578954 SHTN1A0MZ66 631 aa19.22■□□□□ 0.67
SS18-211ENST00000578954 ZKSCAN1P17029 563 aaPredicted RBP19.22■□□□□ 0.67
SS18-211ENST00000578954 USP5P45974 858 aa19.22■□□□□ 0.67
SS18-211ENST00000578954 TDO2P48775 406 aa19.22■□□□□ 0.67
SS18-211ENST00000578954 RBM5P52756 815 aaKnown RBP eCLIP19.22■□□□□ 0.67
SS18-211ENST00000578954 IMMTQ16891 758 aaKnown RBP19.22■□□□□ 0.67
SS18-211ENST00000578954 SPDYE2Q495Y8 402 aa19.22■□□□□ 0.67
SS18-211ENST00000578954 TGFBRAP1Q8WUH2 860 aa19.22■□□□□ 0.67
SS18-211ENST00000578954 DDRGK1Q96HY6 314 aa19.22■□□□□ 0.67
SS18-211ENST00000578954 L3MBTL3Q96JM7 780 aaPredicted RBP19.22■□□□□ 0.67
SS18-211ENST00000578954 ARPP21Q9UBL0 812 aaPredicted RBP19.22■□□□□ 0.67
SS18-211ENST00000578954 ANAPC4Q9UJX5 808 aa19.22■□□□□ 0.67
SS18-211ENST00000578954 DDNO94850 711 aaPredicted RBP19.21■□□□□ 0.67
SS18-211ENST00000578954 CTR9Q6PD62 1173 aa19.21■□□□□ 0.67
SS18-211ENST00000578954 TM6SF1Q9BZW5 370 aa19.21■□□□□ 0.67
SS18-211ENST00000578954 NBPF3Q9H094 633 aa19.21■□□□□ 0.67
SS18-211ENST00000578954 DDX4Q9NQI0 724 aaKnown RBP19.21■□□□□ 0.67
SS18-211ENST00000578954 TAF6LQ9Y6J9 622 aa19.21■□□□□ 0.67
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms