RNA–Protein interactions for RNA: ENST00000576241.1

CCDC40-216, Transcript of coiled-coil domain containing 40, humanhuman

TSL 2

Gene CCDC40, Length 714 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-216ENST00000576241 HOOK2Q96ED9 719 aa17.02■□□□□ 0.32
CCDC40-216ENST00000576241 ELP3Q9H9T3 547 aa17.02■□□□□ 0.32
CCDC40-216ENST00000576241 CSADQ9Y600 493 aa17.02■□□□□ 0.32
CCDC40-216ENST00000576241 FKBP1CQ5VVH2 108 aa17.01■□□□□ 0.31
CCDC40-216ENST00000576241 HHIPL2Q6UWX4 724 aa17.01■□□□□ 0.31
CCDC40-216ENST00000576241 OPTNQ96CV9 577 aa17.01■□□□□ 0.31
CCDC40-216ENST00000576241 PA2G4Q9UQ80 394 aaKnown RBP17.01■□□□□ 0.31
CCDC40-216ENST00000576241 SEMA3EO15041 775 aa17■□□□□ 0.31
CCDC40-216ENST00000576241 GJA5P36382 358 aa17■□□□□ 0.31
CCDC40-216ENST00000576241 MAP3K9P80192 1104 aa17■□□□□ 0.31
CCDC40-216ENST00000576241 CRHR2Q13324 411 aa17■□□□□ 0.31
CCDC40-216ENST00000576241 VGLL4Q14135 290 aa17■□□□□ 0.31
CCDC40-216ENST00000576241 SLC9C1Q4G0N8 1177 aa17■□□□□ 0.31
CCDC40-216ENST00000576241 APOBEC3HQ6NTF7 200 aaKnown RBP17■□□□□ 0.31
CCDC40-216ENST00000576241 FAM83AQ86UY5 434 aa17■□□□□ 0.31
CCDC40-216ENST00000576241 COPRSQ9NQ92 184 aa17■□□□□ 0.31
CCDC40-216ENST00000576241 SRGAP3O43295 1099 aa16.99■□□□□ 0.31
CCDC40-216ENST00000576241 LDHBP07195 334 aaKnown RBP16.99■□□□□ 0.31
CCDC40-216ENST00000576241 SP3Q02447 781 aa16.99■□□□□ 0.31
CCDC40-216ENST00000576241 PPP1R3FQ6ZSY5 799 aaPredicted RBP16.99■□□□□ 0.31
CCDC40-216ENST00000576241 NBPF11Q86T75 865 aa16.99■□□□□ 0.31
CCDC40-216ENST00000576241 DDX55Q8NHQ9 600 aaKnown RBP eCLIP16.99■□□□□ 0.31
CCDC40-216ENST00000576241 DPF3Q92784 378 aa16.99■□□□□ 0.31
CCDC40-216ENST00000576241 FRAT1Q92837 279 aaPredicted RBP16.99■□□□□ 0.31
CCDC40-216ENST00000576241 PRO3102Q9H379 93 aa16.99■□□□□ 0.31
CCDC40-216ENST00000576241 DENND2AQ9ULE3 1009 aa16.99■□□□□ 0.31
CCDC40-216ENST00000576241 PRDX5P30044 214 aa16.98■□□□□ 0.31
CCDC40-216ENST00000576241 PTCH2Q9Y6C5 1203 aa16.98■□□□□ 0.31
CCDC40-216ENST00000576241 SALL1Q9NSC2 1324 aa16.97■□□□□ 0.31
CCDC40-216ENST00000576241 LAMB1P07942 1786 aa16.97■□□□□ 0.31
CCDC40-216ENST00000576241 TESPA1A2RU30 521 aaPredicted RBP16.97■□□□□ 0.31
CCDC40-216ENST00000576241 TRIM27P14373 513 aa16.97■□□□□ 0.31
CCDC40-216ENST00000576241 PHKA1P46020 1223 aa16.97■□□□□ 0.31
CCDC40-216ENST00000576241 DCAF15Q66K64 600 aa16.97■□□□□ 0.31
CCDC40-216ENST00000576241 ATF7IPQ6VMQ6 1270 aa16.97■□□□□ 0.31
CCDC40-216ENST00000576241 ZGPATQ8N5A5 531 aaKnown RBP16.97■□□□□ 0.31
CCDC40-216ENST00000576241 WRNIP1Q96S55 665 aa16.97■□□□□ 0.31
CCDC40-216ENST00000576241 AKAP2Q9Y2D5 859 aa16.97■□□□□ 0.31
CCDC40-216ENST00000576241 DAGLAQ9Y4D2 1042 aa16.97■□□□□ 0.31
CCDC40-216ENST00000576241 RPAP1Q9BWH6 1393 aaPredicted RBP16.97■□□□□ 0.31
CCDC40-216ENST00000576241 BCAR3O75815 825 aa16.96■□□□□ 0.31
CCDC40-216ENST00000576241 GTF2A2P52657 109 aa16.96■□□□□ 0.31
CCDC40-216ENST00000576241 MTX1Q13505 466 aa16.96■□□□□ 0.31
CCDC40-216ENST00000576241 DIXDC1Q155Q3 683 aa16.96■□□□□ 0.31
CCDC40-216ENST00000576241 CCDC102BQ68D86 513 aa16.96■□□□□ 0.31
CCDC40-216ENST00000576241 CNKSR2Q8WXI2 1034 aa16.96■□□□□ 0.31
CCDC40-216ENST00000576241 OTOFQ9HC10 1997 aa16.95■□□□□ 0.3
CCDC40-216ENST00000576241 SPDYE5A6NIY4 337 aa16.95■□□□□ 0.3
CCDC40-216ENST00000576241 SOX1O00570 391 aaPredicted RBP16.95■□□□□ 0.3
CCDC40-216ENST00000576241 GNAI2P04899 355 aa16.95■□□□□ 0.3
CCDC40-216ENST00000576241 ADORA1P30542 326 aa16.95■□□□□ 0.3
CCDC40-216ENST00000576241 MVPQ14764 893 aaKnown RBP16.95■□□□□ 0.3
CCDC40-216ENST00000576241 CDC42EP5Q6NZY7 148 aa16.95■□□□□ 0.3
CCDC40-216ENST00000576241 FAM151AQ8WW52 585 aa16.95■□□□□ 0.3
CCDC40-216ENST00000576241 MS4A4AQ96JQ5 239 aa16.95■□□□□ 0.3
CCDC40-216ENST00000576241 PTPN18Q99952 460 aa16.95■□□□□ 0.3
CCDC40-216ENST00000576241 CCL15-CCL14A0A0B4J2E2 113 aa16.94■□□□□ 0.3
CCDC40-216ENST00000576241 A0A1B0GUL7 405 aa16.94■□□□□ 0.3
CCDC40-216ENST00000576241 TIMM10P62072 90 aa16.94■□□□□ 0.3
CCDC40-216ENST00000576241 HNRNPUQ00839 825 aaKnown RBP eCLIP16.94■□□□□ 0.3
CCDC40-216ENST00000576241 TCP10Q12799 353 aa16.94■□□□□ 0.3
CCDC40-216ENST00000576241 TFCP2Q12800 502 aa16.94■□□□□ 0.3
CCDC40-216ENST00000576241 CCL15Q16663 113 aa16.94■□□□□ 0.3
CCDC40-216ENST00000576241 ERO1BQ86YB8 467 aa16.94■□□□□ 0.3
CCDC40-216ENST00000576241 DZIP1Q86YF9 867 aaKnown RBP16.94■□□□□ 0.3
CCDC40-216ENST00000576241 BRI3BPQ8WY22 251 aa16.94■□□□□ 0.3
CCDC40-216ENST00000576241 ZKSCAN4Q969J2 545 aaPredicted RBP16.94■□□□□ 0.3
CCDC40-216ENST00000576241 CLUAP1Q96AJ1 413 aa16.94■□□□□ 0.3
CCDC40-216ENST00000576241 LRCH3Q96II8 777 aa16.94■□□□□ 0.3
CCDC40-216ENST00000576241 ZNF341Q9BYN7 854 aa16.94■□□□□ 0.3
CCDC40-216ENST00000576241 MYH13Q9UKX3 1938 aa16.94■□□□□ 0.3
CCDC40-216ENST00000576241 ZBTB22O15209 634 aa16.93■□□□□ 0.3
CCDC40-216ENST00000576241 WDHD1O75717 1129 aaPredicted RBP16.93■□□□□ 0.3
CCDC40-216ENST00000576241 RASGRF1Q13972 1273 aa16.93■□□□□ 0.3
CCDC40-216ENST00000576241 SLF2Q8IX21 1173 aa16.93■□□□□ 0.3
CCDC40-216ENST00000576241 SH3TC2Q8TF17 1288 aa16.93■□□□□ 0.3
CCDC40-216ENST00000576241 XAGE2Q96GT9 111 aa16.93■□□□□ 0.3
CCDC40-216ENST00000576241 USP40Q9NVE5 1235 aa16.93■□□□□ 0.3
CCDC40-216ENST00000576241 SNCAIPQ9Y6H5 919 aa16.93■□□□□ 0.3
CCDC40-216ENST00000576241 LAMA3Q16787 3333 aa16.93■□□□□ 0.3
CCDC40-216ENST00000576241 PDS5AQ29RF7 1337 aaKnown RBP16.93■□□□□ 0.3
CCDC40-216ENST00000576241 CETPP11597 493 aa16.92■□□□□ 0.3
CCDC40-216ENST00000576241 SNAPC2Q13487 334 aa16.92■□□□□ 0.3
CCDC40-216ENST00000576241 TAF1CQ15572 869 aaPredicted RBP16.92■□□□□ 0.3
CCDC40-216ENST00000576241 GORABQ5T7V8 394 aa16.92■□□□□ 0.3
CCDC40-216ENST00000576241 ZKSCAN2Q63HK3 967 aa16.92■□□□□ 0.3
CCDC40-216ENST00000576241 SPTY2D1Q68D10 685 aaPredicted RBP16.92■□□□□ 0.3
CCDC40-216ENST00000576241 MIGA2Q7L4E1 593 aa16.92■□□□□ 0.3
CCDC40-216ENST00000576241 NEUROD6Q96NK8 337 aa16.92■□□□□ 0.3
CCDC40-216ENST00000576241 ZFYVE28Q9HCC9 887 aa16.92■□□□□ 0.3
CCDC40-216ENST00000576241 ABCF2Q9UG63 623 aa16.92■□□□□ 0.3
CCDC40-216ENST00000576241 TNNQ9UQP3 1299 aa16.92■□□□□ 0.3
CCDC40-216ENST00000576241 NFIAQ12857 509 aa16.91■□□□□ 0.3
CCDC40-216ENST00000576241 PPIL2Q13356 520 aa16.91■□□□□ 0.3
CCDC40-216ENST00000576241 ARHGEF6Q15052 776 aa16.91■□□□□ 0.3
CCDC40-216ENST00000576241 MIER1Q8N108 512 aa16.91■□□□□ 0.3
CCDC40-216ENST00000576241 SHISA4Q96DD7 197 aa16.91■□□□□ 0.3
CCDC40-216ENST00000576241 COL25A1Q9BXS0 654 aaPredicted RBP16.91■□□□□ 0.3
CCDC40-216ENST00000576241 IRF6O14896 467 aa16.9■□□□□ 0.3
CCDC40-216ENST00000576241 G3BP1Q13283 466 aaKnown RBP eCLIP16.9■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms