RNA–Protein interactions for RNA: ENST00000575976.1

NUP88-211, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 599 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-211ENST00000575976 ADGRA1Q86SQ6 560 aa10.37□□□□□ -0.75
NUP88-211ENST00000575976 PNMA8AQ86V59 439 aaPredicted RBP10.37□□□□□ -0.75
NUP88-211ENST00000575976 SLF2Q8IX21 1173 aa10.37□□□□□ -0.75
NUP88-211ENST00000575976 CNTROBQ8N137 903 aa10.37□□□□□ -0.75
NUP88-211ENST00000575976 AIDAQ96BJ3 306 aa10.37□□□□□ -0.75
NUP88-211ENST00000575976 ZDHHC15Q96MV8 337 aa10.37□□□□□ -0.75
NUP88-211ENST00000575976 FSD1Q9BTV5 496 aa10.37□□□□□ -0.75
NUP88-211ENST00000575976 DDX24Q9GZR7 859 aaKnown RBP eCLIP10.37□□□□□ -0.75
NUP88-211ENST00000575976 TDRD3Q9H7E2 651 aaKnown RBP10.37□□□□□ -0.75
NUP88-211ENST00000575976 SCN4AP35499 1836 aa10.37□□□□□ -0.75
NUP88-211ENST00000575976 MROH7-TTC4A0A0A0MT08 1334 aa10.36□□□□□ -0.75
NUP88-211ENST00000575976 ZNF532Q9HCE3 1301 aa10.36□□□□□ -0.75
NUP88-211ENST00000575976 GPR75-ASB3A0A0A6YYF3 556 aa10.36□□□□□ -0.75
NUP88-211ENST00000575976 TCRBV5S4A2TA0A5A2 114 aa10.36□□□□□ -0.75
NUP88-211ENST00000575976 SDSP20132 328 aa10.36□□□□□ -0.75
NUP88-211ENST00000575976 BTDP43251 543 aa10.36□□□□□ -0.75
NUP88-211ENST00000575976 ZSCAN25Q6NSZ9 544 aa10.36□□□□□ -0.75
NUP88-211ENST00000575976 MYO5AQ9Y4I1 1855 aaKnown RBP10.36□□□□□ -0.75
NUP88-211ENST00000575976 ADAMTSL1Q8N6G6 1762 aa10.35□□□□□ -0.75
NUP88-211ENST00000575976 CLRN2A0PK11 232 aa10.35□□□□□ -0.75
NUP88-211ENST00000575976 RNF113AO15541 343 aaKnown RBP10.35□□□□□ -0.75
NUP88-211ENST00000575976 CTCFP49711 727 aaPredicted RBP10.35□□□□□ -0.75
NUP88-211ENST00000575976 DYNLL1P63167 89 aaKnown RBP10.35□□□□□ -0.75
NUP88-211ENST00000575976 UBE3CQ15386 1083 aa10.35□□□□□ -0.75
NUP88-211ENST00000575976 CDC42EP5Q6NZY7 148 aa10.35□□□□□ -0.75
NUP88-211ENST00000575976 MIGA1Q8NAN2 632 aa10.35□□□□□ -0.75
NUP88-211ENST00000575976 CREBZFQ9NS37 354 aa10.35□□□□□ -0.75
NUP88-211ENST00000575976 USP40Q9NVE5 1235 aa10.35□□□□□ -0.75
NUP88-211ENST00000575976 AATFQ9NY61 560 aaKnown RBP eCLIP10.35□□□□□ -0.75
NUP88-211ENST00000575976 ZNF70Q9UC06 446 aaPredicted RBP10.35□□□□□ -0.75
NUP88-211ENST00000575976 PGAP2Q9UHJ9 254 aa10.35□□□□□ -0.75
NUP88-211ENST00000575976 CLEC11AQ9Y240 323 aa10.35□□□□□ -0.75
NUP88-211ENST00000575976 DOCK2Q92608 1830 aa10.35□□□□□ -0.75
NUP88-211ENST00000575976 MYO1BO43795 1136 aa10.34□□□□□ -0.75
NUP88-211ENST00000575976 BAG3O95817 575 aa10.34□□□□□ -0.75
NUP88-211ENST00000575976 ZFYP08048 801 aaPredicted RBP10.34□□□□□ -0.75
NUP88-211ENST00000575976 RHBDL3P58872 404 aa10.34□□□□□ -0.75
NUP88-211ENST00000575976 PPP4CP60510 307 aa10.34□□□□□ -0.75
NUP88-211ENST00000575976 SPDYE2Q495Y8 402 aa10.34□□□□□ -0.75
NUP88-211ENST00000575976 ANGEL2Q5VTE6 544 aaKnown RBP10.34□□□□□ -0.75
NUP88-211ENST00000575976 TMED8Q6PL24 325 aaPredicted RBP10.34□□□□□ -0.75
NUP88-211ENST00000575976 LDHDQ86WU2 507 aa10.34□□□□□ -0.75
NUP88-211ENST00000575976 ZC3H15Q8WU90 426 aaKnown RBP10.34□□□□□ -0.75
NUP88-211ENST00000575976 APPBP2Q92624 585 aa10.34□□□□□ -0.75
NUP88-211ENST00000575976 NOL10Q9BSC4 688 aaKnown RBP10.34□□□□□ -0.75
NUP88-211ENST00000575976 GGA3Q9NZ52 723 aa10.34□□□□□ -0.75
NUP88-211ENST00000575976 SCAF8Q9UPN6 1271 aaKnown RBP10.34□□□□□ -0.75
NUP88-211ENST00000575976 MYH2Q9UKX2 1941 aa10.33□□□□□ -0.76
NUP88-211ENST00000575976 MAGEB6P1A0A0J9YX57 407 aa10.33□□□□□ -0.76
NUP88-211ENST00000575976 CACNB3P54284 484 aa10.33□□□□□ -0.76
NUP88-211ENST00000575976 MLLT1Q03111 559 aaPredicted RBP10.33□□□□□ -0.76
NUP88-211ENST00000575976 LRRFIP1Q32MZ4 808 aaKnown RBP10.33□□□□□ -0.76
NUP88-211ENST00000575976 BMP2KLQ5H9B9 411 aa10.33□□□□□ -0.76
NUP88-211ENST00000575976 ZMYM1Q5SVZ6 1142 aa10.33□□□□□ -0.76
NUP88-211ENST00000575976 MAP1SQ66K74 1059 aaPredicted RBP10.33□□□□□ -0.76
NUP88-211ENST00000575976 SH3RF3Q8TEJ3 882 aaPredicted RBP10.33□□□□□ -0.76
NUP88-211ENST00000575976 OSBP2Q969R2 916 aa10.33□□□□□ -0.76
NUP88-211ENST00000575976 DCPSQ96C86 337 aaKnown RBP10.33□□□□□ -0.76
NUP88-211ENST00000575976 SEC62Q99442 399 aaKnown RBP10.33□□□□□ -0.76
NUP88-211ENST00000575976 RIOK1Q9BRS2 568 aaKnown RBP10.33□□□□□ -0.76
NUP88-211ENST00000575976 PUS7LQ9H0K6 701 aaKnown RBP10.33□□□□□ -0.76
NUP88-211ENST00000575976 VEZTQ9HBM0 779 aa10.33□□□□□ -0.76
NUP88-211ENST00000575976 MAST2Q6P0Q8 1798 aa10.33□□□□□ -0.76
NUP88-211ENST00000575976 RFX7Q2KHR2 1363 aa10.32□□□□□ -0.76
NUP88-211ENST00000575976 TCP10L2B9ZVM9 353 aa10.32□□□□□ -0.76
NUP88-211ENST00000575976 M0R2C6 588 aa10.32□□□□□ -0.76
NUP88-211ENST00000575976 MBD4O95243 580 aa10.32□□□□□ -0.76
NUP88-211ENST00000575976 NFIAQ12857 509 aa10.32□□□□□ -0.76
NUP88-211ENST00000575976 NMIQ13287 307 aaPredicted RBP10.32□□□□□ -0.76
NUP88-211ENST00000575976 CHADLQ6NUI6 762 aa10.32□□□□□ -0.76
NUP88-211ENST00000575976 TICAM2Q86XR7 235 aa10.32□□□□□ -0.76
NUP88-211ENST00000575976 LCORLQ8N3X6 602 aa10.32□□□□□ -0.76
NUP88-211ENST00000575976 FAM227BQ96M60 508 aa10.32□□□□□ -0.76
NUP88-211ENST00000575976 ARMT1Q9H993 441 aa10.32□□□□□ -0.76
NUP88-211ENST00000575976 TMOD2Q9NZR1 351 aa10.32□□□□□ -0.76
NUP88-211ENST00000575976 PITPNM2Q9BZ72 1349 aa10.32□□□□□ -0.76
NUP88-211ENST00000575976 A0A0D9SFI3 127 aa10.31□□□□□ -0.76
NUP88-211ENST00000575976 ADM5C9JUS6 153 aa10.31□□□□□ -0.76
NUP88-211ENST00000575976 FOXN1O15353 648 aa10.31□□□□□ -0.76
NUP88-211ENST00000575976 WDHD1O75717 1129 aaPredicted RBP10.31□□□□□ -0.76
NUP88-211ENST00000575976 PLCG2P16885 1265 aa10.31□□□□□ -0.76
NUP88-211ENST00000575976 CWC27Q6UX04 472 aaKnown RBP10.31□□□□□ -0.76
NUP88-211ENST00000575976 DLK2Q6UY11 383 aa10.31□□□□□ -0.76
NUP88-211ENST00000575976 CDC37L1Q7L3B6 337 aa10.31□□□□□ -0.76
NUP88-211ENST00000575976 KRT26Q7Z3Y9 468 aa10.31□□□□□ -0.76
NUP88-211ENST00000575976 USP48Q86UV5 1035 aa10.31□□□□□ -0.76
NUP88-211ENST00000575976 APOBEC3FQ8IUX4 373 aaKnown RBP10.31□□□□□ -0.76
NUP88-211ENST00000575976 TEX11Q8IYF3 940 aa10.31□□□□□ -0.76
NUP88-211ENST00000575976 TGFBRAP1Q8WUH2 860 aa10.31□□□□□ -0.76
NUP88-211ENST00000575976 IDI2Q9BXS1 227 aa10.31□□□□□ -0.76
NUP88-211ENST00000575976 GLIS2Q9BZE0 524 aaPredicted RBP10.31□□□□□ -0.76
NUP88-211ENST00000575976 DDX4Q9NQI0 724 aaKnown RBP10.31□□□□□ -0.76
NUP88-211ENST00000575976 HELLSQ9NRZ9 838 aa10.31□□□□□ -0.76
NUP88-211ENST00000575976 DIAPH3Q9NSV4 1193 aa10.31□□□□□ -0.76
NUP88-211ENST00000575976 FAM198AQ9UFP1 575 aa10.31□□□□□ -0.76
NUP88-211ENST00000575976 MKRN1Q9UHC7 482 aaKnown RBP10.31□□□□□ -0.76
NUP88-211ENST00000575976 CNTNAP1P78357 1384 aa10.3□□□□□ -0.76
NUP88-211ENST00000575976 HIP1O00291 1037 aa10.3□□□□□ -0.76
NUP88-211ENST00000575976 GPAA1O43292 621 aa10.3□□□□□ -0.76
NUP88-211ENST00000575976 PRKAB2O43741 272 aa10.3□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms