RNA–Protein interactions for RNA: ENST00000575431.1

CCDC40-214, Transcript of coiled-coil domain containing 40, humanhuman

TSL 3

Gene CCDC40, Length 551 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-214ENST00000575431 FAM83AQ86UY5 434 aa11.6□□□□□ -0.55
CCDC40-214ENST00000575431 HOOK2Q96ED9 719 aa11.6□□□□□ -0.55
CCDC40-214ENST00000575431 DEFB129Q9H1M3 183 aa11.6□□□□□ -0.55
CCDC40-214ENST00000575431 ANTXR1Q9H6X2 564 aa11.6□□□□□ -0.55
CCDC40-214ENST00000575431 VEZTQ9HBM0 779 aa11.6□□□□□ -0.55
CCDC40-214ENST00000575431 AOX1Q06278 1338 aa11.6□□□□□ -0.55
CCDC40-214ENST00000575431 SALL3Q9BXA9 1300 aa11.6□□□□□ -0.55
CCDC40-214ENST00000575431 TRPM7Q96QT4 1865 aa11.59□□□□□ -0.55
CCDC40-214ENST00000575431 ADM5C9JUS6 153 aa11.59□□□□□ -0.55
CCDC40-214ENST00000575431 NPM3O75607 178 aaKnown RBP11.59□□□□□ -0.55
CCDC40-214ENST00000575431 CYP7A1P22680 504 aa11.59□□□□□ -0.55
CCDC40-214ENST00000575431 BTDP43251 543 aa11.59□□□□□ -0.55
CCDC40-214ENST00000575431 PDE1AP54750 535 aa11.59□□□□□ -0.55
CCDC40-214ENST00000575431 PPP4CP60510 307 aa11.59□□□□□ -0.55
CCDC40-214ENST00000575431 FKBP1BP68106 108 aa11.59□□□□□ -0.55
CCDC40-214ENST00000575431 SUPT20HL1Q3ZLR7 823 aa11.59□□□□□ -0.55
CCDC40-214ENST00000575431 CDC42EP5Q6NZY7 148 aa11.59□□□□□ -0.55
CCDC40-214ENST00000575431 CENPQQ7L2Z9 268 aaPredicted RBP11.59□□□□□ -0.55
CCDC40-214ENST00000575431 TICAM2Q86XR7 235 aa11.59□□□□□ -0.55
CCDC40-214ENST00000575431 IDI2Q9BXS1 227 aa11.59□□□□□ -0.55
CCDC40-214ENST00000575431 OSBPL3Q9H4L5 887 aa11.59□□□□□ -0.55
CCDC40-214ENST00000575431 CREBZFQ9NS37 354 aa11.59□□□□□ -0.55
CCDC40-214ENST00000575431 USP40Q9NVE5 1235 aa11.59□□□□□ -0.55
CCDC40-214ENST00000575431 PCDHAC2Q9Y5I4 1007 aa11.59□□□□□ -0.55
CCDC40-214ENST00000575431 TRAF5O00463 557 aa11.58□□□□□ -0.56
CCDC40-214ENST00000575431 ENTPD3O75355 529 aa11.58□□□□□ -0.56
CCDC40-214ENST00000575431 RASA3Q14644 834 aa11.58□□□□□ -0.56
CCDC40-214ENST00000575431 SLC9C2Q5TAH2 1124 aa11.58□□□□□ -0.56
CCDC40-214ENST00000575431 MAGEB6Q8N7X4 407 aa11.58□□□□□ -0.56
CCDC40-214ENST00000575431 C2orf69Q8N8R5 385 aa11.58□□□□□ -0.56
CCDC40-214ENST00000575431 KBTBD3Q8NAB2 608 aa11.58□□□□□ -0.56
CCDC40-214ENST00000575431 PI4K2BQ8TCG2 481 aa11.58□□□□□ -0.56
CCDC40-214ENST00000575431 ZNF384Q8TF68 577 aa11.58□□□□□ -0.56
CCDC40-214ENST00000575431 CDCA5Q96FF9 252 aa11.58□□□□□ -0.56
CCDC40-214ENST00000575431 CCDC136Q96JN2 1154 aa11.58□□□□□ -0.56
CCDC40-214ENST00000575431 TCP10L2B9ZVM9 353 aa11.57□□□□□ -0.56
CCDC40-214ENST00000575431 PPP1R12BO60237 982 aaPredicted RBP11.57□□□□□ -0.56
CCDC40-214ENST00000575431 CELF2O95319 508 aaKnown RBP11.57□□□□□ -0.56
CCDC40-214ENST00000575431 ZFYP08048 801 aaPredicted RBP11.57□□□□□ -0.56
CCDC40-214ENST00000575431 PDE6AP16499 860 aa11.57□□□□□ -0.56
CCDC40-214ENST00000575431 UBE3CQ15386 1083 aa11.57□□□□□ -0.56
CCDC40-214ENST00000575431 OTUD7AQ8TE49 926 aaPredicted RBP11.57□□□□□ -0.56
CCDC40-214ENST00000575431 FAM151AQ8WW52 585 aa11.57□□□□□ -0.56
CCDC40-214ENST00000575431 EVI5LQ96CN4 794 aa11.57□□□□□ -0.56
CCDC40-214ENST00000575431 NDUFB9Q9Y6M9 179 aa11.57□□□□□ -0.56
CCDC40-214ENST00000575431 MYO5AQ9Y4I1 1855 aaKnown RBP11.57□□□□□ -0.56
CCDC40-214ENST00000575431 RPAP1Q9BWH6 1393 aaPredicted RBP11.56□□□□□ -0.56
CCDC40-214ENST00000575431 UNCXA6NJT0 531 aa11.56□□□□□ -0.56
CCDC40-214ENST00000575431 ADD2P35612 726 aa11.56□□□□□ -0.56
CCDC40-214ENST00000575431 RHBDL3P58872 404 aa11.56□□□□□ -0.56
CCDC40-214ENST00000575431 CST9Q5W186 159 aa11.56□□□□□ -0.56
CCDC40-214ENST00000575431 PLEKHM2Q8IWE5 1019 aa11.56□□□□□ -0.56
CCDC40-214ENST00000575431 HHIPL1Q96JK4 782 aa11.56□□□□□ -0.56
CCDC40-214ENST00000575431 ZNF408Q9H9D4 720 aa11.56□□□□□ -0.56
CCDC40-214ENST00000575431 GBA2Q9HCG7 927 aaPredicted RBP11.56□□□□□ -0.56
CCDC40-214ENST00000575431 AATFQ9NY61 560 aaKnown RBP eCLIP11.56□□□□□ -0.56
CCDC40-214ENST00000575431 WDHD1O75717 1129 aaPredicted RBP11.55□□□□□ -0.56
CCDC40-214ENST00000575431 ARMC9Q7Z3E5 817 aa11.55□□□□□ -0.56
CCDC40-214ENST00000575431 TEX11Q8IYF3 940 aa11.55□□□□□ -0.56
CCDC40-214ENST00000575431 EDC3Q96F86 508 aaKnown RBP11.55□□□□□ -0.56
CCDC40-214ENST00000575431 ABT1Q9ULW3 272 aaKnown RBP11.55□□□□□ -0.56
CCDC40-214ENST00000575431 TLL2Q9Y6L7 1015 aa11.55□□□□□ -0.56
CCDC40-214ENST00000575431 ZNF532Q9HCE3 1301 aa11.55□□□□□ -0.56
CCDC40-214ENST00000575431 MYH7P12883 1935 aa11.54□□□□□ -0.56
CCDC40-214ENST00000575431 CNTNAP1P78357 1384 aa11.54□□□□□ -0.56
CCDC40-214ENST00000575431 MAGEB6P1A0A0J9YX57 407 aa11.54□□□□□ -0.56
CCDC40-214ENST00000575431 TCRBV5S4A2TA0A5A2 114 aa11.54□□□□□ -0.56
CCDC40-214ENST00000575431 RNF113AO15541 343 aaKnown RBP11.54□□□□□ -0.56
CCDC40-214ENST00000575431 RGS3P49796 1198 aa11.54□□□□□ -0.56
CCDC40-214ENST00000575431 CACNB3P54284 484 aa11.54□□□□□ -0.56
CCDC40-214ENST00000575431 FMR1Q06787 632 aaKnown RBP eCLIP11.54□□□□□ -0.56
CCDC40-214ENST00000575431 MAP3K11Q16584 847 aa11.54□□□□□ -0.56
CCDC40-214ENST00000575431 DEFB115Q30KQ5 88 aa11.54□□□□□ -0.56
CCDC40-214ENST00000575431 TSHZ3Q63HK5 1081 aa11.54□□□□□ -0.56
CCDC40-214ENST00000575431 DCAF15Q66K64 600 aa11.54□□□□□ -0.56
CCDC40-214ENST00000575431 ADGRA1Q86SQ6 560 aa11.54□□□□□ -0.56
CCDC40-214ENST00000575431 TEPSINQ96N21 525 aa11.54□□□□□ -0.56
CCDC40-214ENST00000575431 FSD1Q9BTV5 496 aa11.54□□□□□ -0.56
CCDC40-214ENST00000575431 DHX36Q9H2U1 1008 aaKnown RBP11.54□□□□□ -0.56
CCDC40-214ENST00000575431 PPP4R2Q9NY27 417 aa11.54□□□□□ -0.56
CCDC40-214ENST00000575431 COL2A1P02458 1487 aaPredicted RBP11.54□□□□□ -0.56
CCDC40-214ENST00000575431 PAPPA2Q9BXP8 1791 aa11.54□□□□□ -0.56
CCDC40-214ENST00000575431 RFX7Q2KHR2 1363 aa11.54□□□□□ -0.56
CCDC40-214ENST00000575431 RASSF10A6NK89 507 aa11.53□□□□□ -0.56
CCDC40-214ENST00000575431 TCP10Q12799 353 aa11.53□□□□□ -0.56
CCDC40-214ENST00000575431 NFIAQ12857 509 aa11.53□□□□□ -0.56
CCDC40-214ENST00000575431 TTLL12Q14166 644 aaPredicted RBP11.53□□□□□ -0.56
CCDC40-214ENST00000575431 NBPF12Q5TAG4 269 aaPredicted RBP11.53□□□□□ -0.56
CCDC40-214ENST00000575431 PRAMEF18Q5VWM3 479 aa11.53□□□□□ -0.56
CCDC40-214ENST00000575431 SAPCD2Q86UD0 394 aa11.53□□□□□ -0.56
CCDC40-214ENST00000575431 ZSCAN29Q8IWY8 852 aaPredicted RBP11.53□□□□□ -0.56
CCDC40-214ENST00000575431 MIGA1Q8NAN2 632 aa11.53□□□□□ -0.56
CCDC40-214ENST00000575431 APPBP2Q92624 585 aa11.53□□□□□ -0.56
CCDC40-214ENST00000575431 RIOK1Q9BRS2 568 aaKnown RBP11.53□□□□□ -0.56
CCDC40-214ENST00000575431 CRNKL1Q9BZJ0 848 aaKnown RBP11.53□□□□□ -0.56
CCDC40-214ENST00000575431 TMEM39BQ9GZU3 492 aa11.53□□□□□ -0.56
CCDC40-214ENST00000575431 FAM198AQ9UFP1 575 aa11.53□□□□□ -0.56
CCDC40-214ENST00000575431 SCAF8Q9UPN6 1271 aaKnown RBP11.53□□□□□ -0.56
CCDC40-214ENST00000575431 ATRNL1Q5VV63 1379 aa11.53□□□□□ -0.56
CCDC40-214ENST00000575431 TRIM6-TRIM34B2RNG4 842 aa11.52□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms