RNA–Protein interactions for RNA: ENST00000574933.1

CCDC40-213, Transcript of coiled-coil domain containing 40, humanhuman

TSL 3

Gene CCDC40, Length 326 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-213ENST00000574933 NBPF9Q3BBW0 867 aa21.98■■□□□ 1.11
CCDC40-213ENST00000574933 RBM26Q5T8P6 1007 aaKnown RBP21.98■■□□□ 1.11
CCDC40-213ENST00000574933 ADGRA1Q86SQ6 560 aa21.98■■□□□ 1.11
CCDC40-213ENST00000574933 ZNF532Q9HCE3 1301 aa21.98■■□□□ 1.11
CCDC40-213ENST00000574933 SPDYE2Q495Y8 402 aa21.97■■□□□ 1.11
CCDC40-213ENST00000574933 CERS3Q8IU89 383 aa21.97■■□□□ 1.11
CCDC40-213ENST00000574933 RILPL2Q969X0 211 aa21.97■■□□□ 1.11
CCDC40-213ENST00000574933 PITPNM2Q9BZ72 1349 aa21.97■■□□□ 1.11
CCDC40-213ENST00000574933 MYH1P12882 1939 aa21.96■■□□□ 1.11
CCDC40-213ENST00000574933 BTDP43251 543 aa21.96■■□□□ 1.11
CCDC40-213ENST00000574933 LDHDQ86WU2 507 aa21.96■■□□□ 1.11
CCDC40-213ENST00000574933 MYO1BO43795 1136 aa21.95■■□□□ 1.1
CCDC40-213ENST00000574933 BAG3O95817 575 aa21.95■■□□□ 1.1
CCDC40-213ENST00000574933 PLCG2P16885 1265 aa21.95■■□□□ 1.1
CCDC40-213ENST00000574933 RHBDL3P58872 404 aa21.95■■□□□ 1.1
CCDC40-213ENST00000574933 ZMYM1Q5SVZ6 1142 aa21.95■■□□□ 1.1
CCDC40-213ENST00000574933 FKBP1CQ5VVH2 108 aa21.95■■□□□ 1.1
CCDC40-213ENST00000574933 CDC42EP5Q6NZY7 148 aa21.95■■□□□ 1.1
CCDC40-213ENST00000574933 APPBP2Q92624 585 aa21.95■■□□□ 1.1
CCDC40-213ENST00000574933 ZNF70Q9UC06 446 aaPredicted RBP21.95■■□□□ 1.1
CCDC40-213ENST00000574933 TRPM7Q96QT4 1865 aa21.94■■□□□ 1.1
CCDC40-213ENST00000574933 CHGBP05060 677 aa21.94■■□□□ 1.1
CCDC40-213ENST00000574933 EAPPQ56P03 285 aaPredicted RBP21.94■■□□□ 1.1
CCDC40-213ENST00000574933 RIOK1Q9BRS2 568 aaKnown RBP21.94■■□□□ 1.1
CCDC40-213ENST00000574933 TDRD3Q9H7E2 651 aaKnown RBP21.94■■□□□ 1.1
CCDC40-213ENST00000574933 HIP1O00291 1037 aa21.93■■□□□ 1.1
CCDC40-213ENST00000574933 ASTN2O75129 1339 aaPredicted RBP21.93■■□□□ 1.1
CCDC40-213ENST00000574933 POTEIP0CG38 1075 aa21.93■■□□□ 1.1
CCDC40-213ENST00000574933 POTEJP0CG39 1038 aa21.93■■□□□ 1.1
CCDC40-213ENST00000574933 SLFNL1Q499Z3 407 aa21.93■■□□□ 1.1
CCDC40-213ENST00000574933 NOL10Q9BSC4 688 aaKnown RBP21.93■■□□□ 1.1
CCDC40-213ENST00000574933 BAZ2AQ9UIF9 1905 aaKnown RBP21.93■■□□□ 1.1
CCDC40-213ENST00000574933 NPM3O75607 178 aaKnown RBP21.92■■□□□ 1.1
CCDC40-213ENST00000574933 OSBP2Q969R2 916 aa21.92■■□□□ 1.1
CCDC40-213ENST00000574933 IDI2Q9BXS1 227 aa21.92■■□□□ 1.1
CCDC40-213ENST00000574933 PUS7LQ9H0K6 701 aaKnown RBP21.92■■□□□ 1.1
CCDC40-213ENST00000574933 USP40Q9NVE5 1235 aa21.92■■□□□ 1.1
CCDC40-213ENST00000574933 AATFQ9NY61 560 aaKnown RBP eCLIP21.92■■□□□ 1.1
CCDC40-213ENST00000574933 GGA3Q9NZ52 723 aa21.92■■□□□ 1.1
CCDC40-213ENST00000574933 NAV1Q8NEY1 1877 aa21.92■■□□□ 1.1
CCDC40-213ENST00000574933 MAGEB6P1A0A0J9YX57 407 aa21.91■■□□□ 1.1
CCDC40-213ENST00000574933 ANGEL2Q5VTE6 544 aaKnown RBP21.91■■□□□ 1.1
CCDC40-213ENST00000574933 APOBEC3FQ8IUX4 373 aaKnown RBP21.91■■□□□ 1.1
CCDC40-213ENST00000574933 MIGA1Q8NAN2 632 aa21.91■■□□□ 1.1
CCDC40-213ENST00000574933 HELLSQ9NRZ9 838 aa21.91■■□□□ 1.1
CCDC40-213ENST00000574933 DDX60LQ5H9U9 1706 aaKnown RBP21.91■■□□□ 1.1
CCDC40-213ENST00000574933 WDHD1O75717 1129 aaPredicted RBP21.9■■□□□ 1.1
CCDC40-213ENST00000574933 DYNLL1P63167 89 aaKnown RBP21.9■■□□□ 1.1
CCDC40-213ENST00000574933 TMOD2Q9NZR1 351 aa21.9■■□□□ 1.1
CCDC40-213ENST00000574933 CLRN2A0PK11 232 aa21.89■■□□□ 1.09
CCDC40-213ENST00000574933 TNFAIP1Q13829 316 aa21.89■■□□□ 1.09
CCDC40-213ENST00000574933 CHADLQ6NUI6 762 aa21.89■■□□□ 1.09
CCDC40-213ENST00000574933 FAM83AQ86UY5 434 aa21.89■■□□□ 1.09
CCDC40-213ENST00000574933 RBM46Q8TBY0 533 aaKnown RBP21.89■■□□□ 1.09
CCDC40-213ENST00000574933 SH3RF3Q8TEJ3 882 aaPredicted RBP21.89■■□□□ 1.09
CCDC40-213ENST00000574933 DCPSQ96C86 337 aaKnown RBP21.89■■□□□ 1.09
CCDC40-213ENST00000574933 CLEC11AQ9Y240 323 aa21.89■■□□□ 1.09
CCDC40-213ENST00000574933 TOMM70O94826 608 aa21.88■■□□□ 1.09
CCDC40-213ENST00000574933 MBD4O95243 580 aa21.88■■□□□ 1.09
CCDC40-213ENST00000574933 CHMLP26374 656 aa21.88■■□□□ 1.09
CCDC40-213ENST00000574933 NMIQ13287 307 aaPredicted RBP21.88■■□□□ 1.09
CCDC40-213ENST00000574933 TEX11Q8IYF3 940 aa21.88■■□□□ 1.09
CCDC40-213ENST00000574933 LCORLQ8N3X6 602 aa21.88■■□□□ 1.09
CCDC40-213ENST00000574933 AIDAQ96BJ3 306 aa21.88■■□□□ 1.09
CCDC40-213ENST00000574933 STRBPQ96SI9 672 aaKnown RBP21.88■■□□□ 1.09
CCDC40-213ENST00000574933 PPP2R3BQ9Y5P8 575 aa21.88■■□□□ 1.09
CCDC40-213ENST00000574933 COL2A1P02458 1487 aaPredicted RBP21.88■■□□□ 1.09
CCDC40-213ENST00000574933 CNTNAP1P78357 1384 aa21.87■■□□□ 1.09
CCDC40-213ENST00000574933 RPAP1Q9BWH6 1393 aaPredicted RBP21.87■■□□□ 1.09
CCDC40-213ENST00000574933 A0A0D9SFI3 127 aa21.87■■□□□ 1.09
CCDC40-213ENST00000574933 M0R2C6 588 aa21.87■■□□□ 1.09
CCDC40-213ENST00000574933 ENTPD3O75355 529 aa21.87■■□□□ 1.09
CCDC40-213ENST00000574933 MCMDC2Q4G0Z9 681 aa21.87■■□□□ 1.09
CCDC40-213ENST00000574933 CDC37L1Q7L3B6 337 aa21.87■■□□□ 1.09
CCDC40-213ENST00000574933 FAM227BQ96M60 508 aa21.87■■□□□ 1.09
CCDC40-213ENST00000574933 SEC62Q99442 399 aaKnown RBP21.87■■□□□ 1.09
CCDC40-213ENST00000574933 VEZTQ9HBM0 779 aa21.87■■□□□ 1.09
CCDC40-213ENST00000574933 DIAPH3Q9NSV4 1193 aa21.87■■□□□ 1.09
CCDC40-213ENST00000574933 FAM198AQ9UFP1 575 aa21.87■■□□□ 1.09
CCDC40-213ENST00000574933 GPAA1O43292 621 aa21.86■■□□□ 1.09
CCDC40-213ENST00000574933 TNNI2P48788 182 aa21.86■■□□□ 1.09
CCDC40-213ENST00000574933 NFIAQ12857 509 aa21.86■■□□□ 1.09
CCDC40-213ENST00000574933 SULF1Q8IWU6 871 aa21.86■■□□□ 1.09
CCDC40-213ENST00000574933 CRNKL1Q9BZJ0 848 aaKnown RBP21.86■■□□□ 1.09
CCDC40-213ENST00000574933 ARMT1Q9H993 441 aa21.86■■□□□ 1.09
CCDC40-213ENST00000574933 MKRN1Q9UHC7 482 aaKnown RBP21.86■■□□□ 1.09
CCDC40-213ENST00000574933 SIPA1L1O43166 1804 aa21.85■■□□□ 1.09
CCDC40-213ENST00000574933 RAD50Q92878 1312 aa21.85■■□□□ 1.09
CCDC40-213ENST00000574933 CACNB3P54284 484 aa21.85■■□□□ 1.09
CCDC40-213ENST00000574933 MAP1SQ66K74 1059 aaPredicted RBP21.85■■□□□ 1.09
CCDC40-213ENST00000574933 KRT26Q7Z3Y9 468 aa21.85■■□□□ 1.09
CCDC40-213ENST00000574933 SMC1BQ8NDV3 1235 aa21.85■■□□□ 1.09
CCDC40-213ENST00000574933 FAM151AQ8WW52 585 aa21.85■■□□□ 1.09
CCDC40-213ENST00000574933 DEFB129Q9H1M3 183 aa21.85■■□□□ 1.09
CCDC40-213ENST00000574933 DDX4Q9NQI0 724 aaKnown RBP21.85■■□□□ 1.09
CCDC40-213ENST00000574933 TCP10L2B9ZVM9 353 aa21.84■■□□□ 1.09
CCDC40-213ENST00000574933 ITGBL1O95965 494 aaPredicted RBP21.84■■□□□ 1.09
CCDC40-213ENST00000574933 GNAT2P19087 354 aa21.84■■□□□ 1.09
CCDC40-213ENST00000574933 RUFY2Q8WXA3 655 aa21.84■■□□□ 1.09
CCDC40-213ENST00000574933 ATP8A2Q9NTI2 1148 aa21.84■■□□□ 1.09
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms