RNA–Protein interactions for RNA: ENST00000574501.1

SMG6-215, Transcript of SMG6, nonsense mediated mRNA decay factor, humanhuman

Gene SMG6, Length 2,419 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG6-215ENST00000574501 SIPA1L2Q9P2F8 1722 aaPredicted RBP16.51■□□□□ 0.23
SMG6-215ENST00000574501 FOXN1O15353 648 aa16.5■□□□□ 0.23
SMG6-215ENST00000574501 IGKV5-2P06315 115 aa16.5■□□□□ 0.23
SMG6-215ENST00000574501 HSP90B2PQ58FF3 399 aa16.5■□□□□ 0.23
SMG6-215ENST00000574501 METTL16Q86W50 562 aaKnown RBP16.5■□□□□ 0.23
SMG6-215ENST00000574501 GPATCH11Q8N954 259 aa16.5■□□□□ 0.23
SMG6-215ENST00000574501 PPM1EQ8WY54 764 aa16.5■□□□□ 0.23
SMG6-215ENST00000574501 PCDHA5Q9Y5H7 936 aa16.5■□□□□ 0.23
SMG6-215ENST00000574501 LONRF3Q496Y0 759 aa16.5■□□□□ 0.23
SMG6-215ENST00000574501 BRAPQ7Z569 592 aa16.5■□□□□ 0.23
SMG6-215ENST00000574501 TRMT44Q8IYL2 757 aaKnown RBP16.5■□□□□ 0.23
SMG6-215ENST00000574501 HAUS7Q99871 368 aa16.5■□□□□ 0.23
SMG6-215ENST00000574501 FAM204AQ9H8W3 233 aa16.5■□□□□ 0.23
SMG6-215ENST00000574501 BRMS1Q9HCU9 246 aa16.5■□□□□ 0.23
SMG6-215ENST00000574501 CDC23Q9UJX2 597 aa16.5■□□□□ 0.23
SMG6-215ENST00000574501 GOLIM4O00461 696 aa16.49■□□□□ 0.23
SMG6-215ENST00000574501 CCDC175P0C221 793 aa16.49■□□□□ 0.23
SMG6-215ENST00000574501 HSPD1P10809 573 aaKnown RBP16.49■□□□□ 0.23
SMG6-215ENST00000574501 ATP2B1P20020 1258 aa16.49■□□□□ 0.23
SMG6-215ENST00000574501 SLC39A14Q15043 492 aa16.49■□□□□ 0.23
SMG6-215ENST00000574501 ZNF569Q5MCW4 686 aa16.49■□□□□ 0.23
SMG6-215ENST00000574501 CEP112Q8N8E3 955 aa16.49■□□□□ 0.23
SMG6-215ENST00000574501 MKRN1Q9UHC7 482 aaKnown RBP16.49■□□□□ 0.23
SMG6-215ENST00000574501 FER1L4A9Z1Z3 1794 aa16.49■□□□□ 0.23
SMG6-215ENST00000574501 UTYO14607 1347 aa16.49■□□□□ 0.23
SMG6-215ENST00000574501 LRRIQ3A6PVS8 624 aaPredicted RBP16.49■□□□□ 0.23
SMG6-215ENST00000574501 KIF23Q02241 960 aaPredicted RBP16.49■□□□□ 0.23
SMG6-215ENST00000574501 KIF4BQ2VIQ3 1234 aa16.49■□□□□ 0.23
SMG6-215ENST00000574501 MSANTD4Q8NCY6 345 aa16.49■□□□□ 0.23
SMG6-215ENST00000574501 CPLX3Q8WVH0 158 aa16.49■□□□□ 0.23
SMG6-215ENST00000574501 GNL3Q9BVP2 549 aaKnown RBP eCLIP16.49■□□□□ 0.23
SMG6-215ENST00000574501 NFE2L3Q9Y4A8 694 aa16.49■□□□□ 0.23
SMG6-215ENST00000574501 FMR1Q06787 632 aaKnown RBP eCLIP16.48■□□□□ 0.23
SMG6-215ENST00000574501 RIC3Q7Z5B4 369 aa16.48■□□□□ 0.23
SMG6-215ENST00000574501 KBTBD3Q8NAB2 608 aa16.48■□□□□ 0.23
SMG6-215ENST00000574501 AIFM3Q96NN9 605 aa16.48■□□□□ 0.23
SMG6-215ENST00000574501 DEF6Q9H4E7 631 aa16.48■□□□□ 0.23
SMG6-215ENST00000574501 HPSEQ9Y251 543 aa16.48■□□□□ 0.23
SMG6-215ENST00000574501 TOPAZ1Q8N9V7 1692 aa16.48■□□□□ 0.23
SMG6-215ENST00000574501 HAND2P61296 217 aa16.48■□□□□ 0.23
SMG6-215ENST00000574501 SPECC1Q5M775 1068 aa16.48■□□□□ 0.23
SMG6-215ENST00000574501 RAD9BQ6WBX8 426 aa16.48■□□□□ 0.23
SMG6-215ENST00000574501 AEBP2Q6ZN18 517 aaPredicted RBP16.48■□□□□ 0.23
SMG6-215ENST00000574501 TEX2Q8IWB9 1127 aa16.48■□□□□ 0.23
SMG6-215ENST00000574501 FAM71BQ8TC56 605 aa16.48■□□□□ 0.23
SMG6-215ENST00000574501 SH3TC1Q8TE82 1336 aa16.47■□□□□ 0.23
SMG6-215ENST00000574501 KLF18A0A0U1RQI7 1052 aa16.47■□□□□ 0.23
SMG6-215ENST00000574501 GOLGA8BA8MQT2 603 aa16.47■□□□□ 0.23
SMG6-215ENST00000574501 CPLX1O14810 134 aa16.47■□□□□ 0.23
SMG6-215ENST00000574501 KIF5CO60282 957 aa16.47■□□□□ 0.23
SMG6-215ENST00000574501 ZNF827Q17R98 1081 aa16.47■□□□□ 0.23
SMG6-215ENST00000574501 NCAPGQ9BPX3 1015 aa16.47■□□□□ 0.23
SMG6-215ENST00000574501 DSCC1Q9BVC3 393 aa16.47■□□□□ 0.23
SMG6-215ENST00000574501 POTEB2H3BUK9 544 aa16.47■□□□□ 0.23
SMG6-215ENST00000574501 MYCBPQ99417 103 aaPredicted RBP16.47■□□□□ 0.23
SMG6-215ENST00000574501 TEX13AQ9BXU3 409 aaPredicted RBP16.47■□□□□ 0.23
SMG6-215ENST00000574501 ADGRG1Q9Y653 693 aa16.47■□□□□ 0.23
SMG6-215ENST00000574501 ABL1P00519 1130 aa16.46■□□□□ 0.23
SMG6-215ENST00000574501 PTPN12Q05209 780 aaKnown RBP16.46■□□□□ 0.23
SMG6-215ENST00000574501 SAMSN1Q9NSI8 373 aaKnown RBP16.46■□□□□ 0.23
SMG6-215ENST00000574501 ZNF530Q6P9A1 599 aaPredicted RBP16.46■□□□□ 0.23
SMG6-215ENST00000574501 C14orf37Q86TY3 774 aa16.46■□□□□ 0.23
SMG6-215ENST00000574501 MICALL1Q8N3F8 863 aa16.46■□□□□ 0.23
SMG6-215ENST00000574501 CDC5LQ99459 802 aaKnown RBP16.46■□□□□ 0.23
SMG6-215ENST00000574501 RAI14Q9P0K7 980 aa16.46■□□□□ 0.23
SMG6-215ENST00000574501 HPS5Q9UPZ3 1129 aa16.46■□□□□ 0.23
SMG6-215ENST00000574501 AKR1B15C9JRZ8 316 aaPredicted RBP16.45■□□□□ 0.22
SMG6-215ENST00000574501 RNF40O75150 1001 aa16.45■□□□□ 0.22
SMG6-215ENST00000574501 DDX58O95786 925 aaKnown RBP16.45■□□□□ 0.22
SMG6-215ENST00000574501 MYL6BP14649 208 aa16.45■□□□□ 0.22
SMG6-215ENST00000574501 CCDC102BQ68D86 513 aa16.45■□□□□ 0.22
SMG6-215ENST00000574501 SLC35F6Q8N357 371 aa16.45■□□□□ 0.22
SMG6-215ENST00000574501 NOA1Q8NC60 698 aaKnown RBP16.45■□□□□ 0.22
SMG6-215ENST00000574501 NEUROD6Q96NK8 337 aa16.45■□□□□ 0.22
SMG6-215ENST00000574501 PTPRUQ92729 1446 aa16.45■□□□□ 0.22
SMG6-215ENST00000574501 CTAGE9A4FU28 777 aa16.45■□□□□ 0.22
SMG6-215ENST00000574501 NEURL1BA8MQ27 555 aa16.45■□□□□ 0.22
SMG6-215ENST00000574501 TEX33O43247 280 aa16.45■□□□□ 0.22
SMG6-215ENST00000574501 MYO1BO43795 1136 aa16.45■□□□□ 0.22
SMG6-215ENST00000574501 MYD88Q99836 296 aa16.45■□□□□ 0.22
SMG6-215ENST00000574501 COPRSQ9NQ92 184 aa16.45■□□□□ 0.22
SMG6-215ENST00000574501 RNF216Q9NWF9 866 aaPredicted RBP16.45■□□□□ 0.22
SMG6-215ENST00000574501 PAG1Q9NWQ8 432 aa16.45■□□□□ 0.22
SMG6-215ENST00000574501 ADAMTSL3P82987 1691 aa16.44■□□□□ 0.22
SMG6-215ENST00000574501 PPFIA4O75335 1185 aa16.44■□□□□ 0.22
SMG6-215ENST00000574501 ZNF18P17022 549 aa16.44■□□□□ 0.22
SMG6-215ENST00000574501 GCKRQ14397 625 aa16.44■□□□□ 0.22
SMG6-215ENST00000574501 RESP18Q5W5W9 173 aa16.44■□□□□ 0.22
SMG6-215ENST00000574501 HELLSQ9NRZ9 838 aa16.44■□□□□ 0.22
SMG6-215ENST00000574501 KCNH3Q9ULD8 1083 aa16.44■□□□□ 0.22
SMG6-215ENST00000574501 KDM3BQ7LBC6 1761 aa16.44■□□□□ 0.22
SMG6-215ENST00000574501 RFX5P48382 616 aaPredicted RBP16.44■□□□□ 0.22
SMG6-215ENST00000574501 RBL2Q08999 1139 aa16.44■□□□□ 0.22
SMG6-215ENST00000574501 PTPAQ15257 358 aa16.44■□□□□ 0.22
SMG6-215ENST00000574501 VPS37DQ86XT2 251 aa16.44■□□□□ 0.22
SMG6-215ENST00000574501 MSL3Q8N5Y2 521 aaKnown RBP16.44■□□□□ 0.22
SMG6-215ENST00000574501 ABTB2Q8N961 1025 aa16.44■□□□□ 0.22
SMG6-215ENST00000574501 SECISBP2LQ93073 1101 aaKnown RBP16.44■□□□□ 0.22
SMG6-215ENST00000574501 MAN1B1Q9UKM7 699 aa16.44■□□□□ 0.22
SMG6-215ENST00000574501 RFX7Q2KHR2 1363 aa16.43■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms