RNA–Protein interactions for RNA: ENST00000574087.1

NUP88-208, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 548 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-208ENST00000574087 FANCCQ00597 558 aa8.02□□□□□ -1.13
NUP88-208ENST00000574087 PDE3AQ14432 1141 aa8.02□□□□□ -1.13
NUP88-208ENST00000574087 MAP3K11Q16584 847 aa8.02□□□□□ -1.13
NUP88-208ENST00000574087 NUTM2GQ5VZR2 741 aa8.02□□□□□ -1.13
NUP88-208ENST00000574087 MAP1SQ66K74 1059 aaPredicted RBP8.02□□□□□ -1.13
NUP88-208ENST00000574087 ANKRD34AQ69YU3 496 aa8.02□□□□□ -1.13
NUP88-208ENST00000574087 SCARA3Q6AZY7 606 aa8.02□□□□□ -1.13
NUP88-208ENST00000574087 LLGL2Q6P1M3 1020 aa8.02□□□□□ -1.13
NUP88-208ENST00000574087 MPRIPQ6WCQ1 1025 aa8.02□□□□□ -1.13
NUP88-208ENST00000574087 AGMOQ6ZNB7 445 aa8.02□□□□□ -1.13
NUP88-208ENST00000574087 ERMP1Q7Z2K6 904 aa8.02□□□□□ -1.13
NUP88-208ENST00000574087 WDR89Q96FK6 387 aaPredicted RBP8.02□□□□□ -1.13
NUP88-208ENST00000574087 MEGF10Q96KG7 1140 aa8.02□□□□□ -1.13
NUP88-208ENST00000574087 UBL7Q96S82 380 aaPredicted RBP8.02□□□□□ -1.13
NUP88-208ENST00000574087 METTL5Q9NRN9 209 aaKnown RBP8.02□□□□□ -1.13
NUP88-208ENST00000574087 SCAMP3O14828 347 aaKnown RBP8.01□□□□□ -1.13
NUP88-208ENST00000574087 AOC2O75106 756 aa8.01□□□□□ -1.13
NUP88-208ENST00000574087 TRIM37O94972 964 aa8.01□□□□□ -1.13
NUP88-208ENST00000574087 TIAF1O95411 115 aa8.01□□□□□ -1.13
NUP88-208ENST00000574087 LIG1P18858 919 aa8.01□□□□□ -1.13
NUP88-208ENST00000574087 KIF4BQ2VIQ3 1234 aa8.01□□□□□ -1.13
NUP88-208ENST00000574087 WDR18Q9BV38 432 aa8.01□□□□□ -1.13
NUP88-208ENST00000574087 CYP4F12Q9HCS2 524 aa8.01□□□□□ -1.13
NUP88-208ENST00000574087 PROCP04070 461 aa8□□□□□ -1.13
NUP88-208ENST00000574087 GLB1P16278 677 aa8□□□□□ -1.13
NUP88-208ENST00000574087 ZNF76P36508 570 aa8□□□□□ -1.13
NUP88-208ENST00000574087 PHC3Q8NDX5 983 aa8□□□□□ -1.13
NUP88-208ENST00000574087 GPBAR1Q8TDU6 330 aa8□□□□□ -1.13
NUP88-208ENST00000574087 CEP41Q9BYV8 373 aa8□□□□□ -1.13
NUP88-208ENST00000574087 TLR6Q9Y2C9 796 aa8□□□□□ -1.13
NUP88-208ENST00000574087 PCDHGC5Q9Y5F6 944 aa8□□□□□ -1.13
NUP88-208ENST00000574087 TFE3P19532 575 aaPredicted RBP7.99□□□□□ -1.13
NUP88-208ENST00000574087 PREPP48147 710 aa7.99□□□□□ -1.13
NUP88-208ENST00000574087 SOX4Q06945 474 aaPredicted RBP7.99□□□□□ -1.13
NUP88-208ENST00000574087 FDX2Q6P4F2 183 aa7.99□□□□□ -1.13
NUP88-208ENST00000574087 HS2ST1Q7LGA3 356 aa7.99□□□□□ -1.13
NUP88-208ENST00000574087 RELL1Q8IUW5 271 aa7.99□□□□□ -1.13
NUP88-208ENST00000574087 GAL3ST3Q96A11 431 aa7.99□□□□□ -1.13
NUP88-208ENST00000574087 FAM46AQ96IP4 442 aaKnown RBP7.99□□□□□ -1.13
NUP88-208ENST00000574087 RHOVQ96L33 236 aa7.99□□□□□ -1.13
NUP88-208ENST00000574087 SPOCK3Q9BQ16 436 aa7.99□□□□□ -1.13
NUP88-208ENST00000574087 COPRSQ9NQ92 184 aa7.99□□□□□ -1.13
NUP88-208ENST00000574087 RAD18Q9NS91 495 aa7.99□□□□□ -1.13
NUP88-208ENST00000574087 PCDHB5Q9Y5E4 795 aa7.99□□□□□ -1.13
NUP88-208ENST00000574087 F6X3S4 739 aa7.98□□□□□ -1.13
NUP88-208ENST00000574087 ADH5P11766 374 aa7.98□□□□□ -1.13
NUP88-208ENST00000574087 PTPN11Q06124 597 aaPredicted RBP7.98□□□□□ -1.13
NUP88-208ENST00000574087 PWP1Q13610 501 aa7.98□□□□□ -1.13
NUP88-208ENST00000574087 C12orf50Q8NA57 414 aaPredicted RBP7.98□□□□□ -1.13
NUP88-208ENST00000574087 TMEM74Q96NL1 305 aa7.98□□□□□ -1.13
NUP88-208ENST00000574087 KBTBD4Q9NVX7 518 aa7.98□□□□□ -1.13
NUP88-208ENST00000574087 GGT7Q9UJ14 662 aa7.98□□□□□ -1.13
NUP88-208ENST00000574087 PPP1R9AQ9ULJ8 1098 aa7.98□□□□□ -1.13
NUP88-208ENST00000574087 MSTNO14793 375 aa7.97□□□□□ -1.13
NUP88-208ENST00000574087 TMPRSS2O15393 492 aa7.97□□□□□ -1.13
NUP88-208ENST00000574087 IGHA1P01876 353 aa7.97□□□□□ -1.13
NUP88-208ENST00000574087 DRD2P14416 443 aa7.97□□□□□ -1.13
NUP88-208ENST00000574087 HNRNPUQ00839 825 aaKnown RBP eCLIP7.97□□□□□ -1.13
NUP88-208ENST00000574087 UVSSAQ2YD98 709 aa7.97□□□□□ -1.13
NUP88-208ENST00000574087 GPAT2Q6NUI2 795 aa7.97□□□□□ -1.13
NUP88-208ENST00000574087 METTL16Q86W50 562 aaKnown RBP7.97□□□□□ -1.13
NUP88-208ENST00000574087 ARMC10Q8N2F6 343 aa7.97□□□□□ -1.13
NUP88-208ENST00000574087 RNF34Q969K3 372 aa7.97□□□□□ -1.13
NUP88-208ENST00000574087 GSX1Q9H4S2 264 aaPredicted RBP7.97□□□□□ -1.13
NUP88-208ENST00000574087 TPSG1Q9NRR2 321 aa7.97□□□□□ -1.13
NUP88-208ENST00000574087 E9PSI1 815 aa7.96□□□□□ -1.14
NUP88-208ENST00000574087 PF4P02776 101 aa7.96□□□□□ -1.14
NUP88-208ENST00000574087 SLFN14P0C7P3 912 aa7.96□□□□□ -1.14
NUP88-208ENST00000574087 GBP2P32456 591 aaPredicted RBP7.96□□□□□ -1.14
NUP88-208ENST00000574087 HDLBPQ00341 1268 aaKnown RBP7.96□□□□□ -1.14
NUP88-208ENST00000574087 LMNB2Q03252 620 aa7.96□□□□□ -1.14
NUP88-208ENST00000574087 CAMK2GQ13555 558 aaPredicted RBP7.96□□□□□ -1.14
NUP88-208ENST00000574087 ZC3H12AQ5D1E8 599 aaKnown RBP7.96□□□□□ -1.14
NUP88-208ENST00000574087 AKAP4Q5JQC9 854 aa7.96□□□□□ -1.14
NUP88-208ENST00000574087 TRIM42Q8IWZ5 723 aa7.96□□□□□ -1.14
NUP88-208ENST00000574087 C2CD4AQ8NCU7 369 aaPredicted RBP7.96□□□□□ -1.14
NUP88-208ENST00000574087 ACSBG1Q96GR2 724 aa7.96□□□□□ -1.14
NUP88-208ENST00000574087 CRIM1Q9NZV1 1036 aa7.96□□□□□ -1.14
NUP88-208ENST00000574087 MINDY4BA8MYZ0 360 aa7.95□□□□□ -1.14
NUP88-208ENST00000574087 SART1O43290 800 aaKnown RBP7.95□□□□□ -1.14
NUP88-208ENST00000574087 GARTP22102 1010 aa7.95□□□□□ -1.14
NUP88-208ENST00000574087 ID3Q02535 119 aa7.95□□□□□ -1.14
NUP88-208ENST00000574087 SEPT6Q14141 434 aa7.95□□□□□ -1.14
NUP88-208ENST00000574087 PPP1R3FQ6ZSY5 799 aaPredicted RBP7.95□□□□□ -1.14
NUP88-208ENST00000574087 CCDC84Q86UT8 332 aaPredicted RBP7.95□□□□□ -1.14
NUP88-208ENST00000574087 TP53INP1Q96A56 240 aa7.95□□□□□ -1.14
NUP88-208ENST00000574087 MIR1-1HGQ9H1L0 117 aa7.95□□□□□ -1.14
NUP88-208ENST00000574087 PCDHA4Q9UN74 947 aa7.95□□□□□ -1.14
NUP88-208ENST00000574087 LMNB1P20700 586 aa7.94□□□□□ -1.14
NUP88-208ENST00000574087 DOC2BQ14184 412 aa7.94□□□□□ -1.14
NUP88-208ENST00000574087 MYRFLQ96LU7 910 aa7.94□□□□□ -1.14
NUP88-208ENST00000574087 KCNQ5Q9NR82 932 aa7.94□□□□□ -1.14
NUP88-208ENST00000574087 IGSF5Q9NSI5 407 aa7.94□□□□□ -1.14
NUP88-208ENST00000574087 AP4E1Q9UPM8 1137 aa7.94□□□□□ -1.14
NUP88-208ENST00000574087 ACTL7BQ9Y614 415 aa7.94□□□□□ -1.14
NUP88-208ENST00000574087 ERVK-24P63145 666 aa7.93□□□□□ -1.14
NUP88-208ENST00000574087 PDZRN4Q6ZMN7 1036 aaPredicted RBP7.93□□□□□ -1.14
NUP88-208ENST00000574087 DYMQ7RTS9 669 aa7.93□□□□□ -1.14
NUP88-208ENST00000574087 UTP4Q969X6 686 aaKnown RBP7.93□□□□□ -1.14
NUP88-208ENST00000574087 FANCD2OSQ96PS1 177 aa7.93□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms