RNA–Protein interactions for RNA: ENST00000572809.1

NUP88-205, Transcript of nucleoporin 88, humanhuman

TSL 3

Gene NUP88, Length 771 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-205ENST00000572809 EPHA10Q5JZY3 1008 aa9.38□□□□□ -0.91
NUP88-205ENST00000572809 ZNF697Q5TEC3 545 aa9.38□□□□□ -0.91
NUP88-205ENST00000572809 LIAT1Q6ZQX7 453 aa9.38□□□□□ -0.91
NUP88-205ENST00000572809 PGAP2Q9UHJ9 254 aa9.38□□□□□ -0.91
NUP88-205ENST00000572809 LTBP1Q14766 1721 aa9.38□□□□□ -0.91
NUP88-205ENST00000572809 SHTN1A0MZ66 631 aa9.37□□□□□ -0.91
NUP88-205ENST00000572809 NBPF7P0C2Y1 421 aaPredicted RBP9.37□□□□□ -0.91
NUP88-205ENST00000572809 SSTR3P32745 418 aaPredicted RBP9.37□□□□□ -0.91
NUP88-205ENST00000572809 MDM2Q00987 491 aaPredicted RBP9.37□□□□□ -0.91
NUP88-205ENST00000572809 CHRNDQ07001 517 aa9.37□□□□□ -0.91
NUP88-205ENST00000572809 TREML4Q6UXN2 200 aa9.37□□□□□ -0.91
NUP88-205ENST00000572809 LDHAL6AQ6ZMR3 332 aa9.37□□□□□ -0.91
NUP88-205ENST00000572809 ANKLE1Q8NAG6 615 aa9.37□□□□□ -0.91
NUP88-205ENST00000572809 MKRN1Q9UHC7 482 aaKnown RBP9.37□□□□□ -0.91
NUP88-205ENST00000572809 CEP350Q5VT06 3117 aa9.37□□□□□ -0.91
NUP88-205ENST00000572809 ADAMTSL1Q8N6G6 1762 aa9.37□□□□□ -0.91
NUP88-205ENST00000572809 MYH3P11055 1940 aa9.37□□□□□ -0.91
NUP88-205ENST00000572809 ZNF804BA4D1E1 1349 aa9.36□□□□□ -0.91
NUP88-205ENST00000572809 UTYO14607 1347 aa9.36□□□□□ -0.91
NUP88-205ENST00000572809 USP17L3A6NCW0 530 aa9.36□□□□□ -0.91
NUP88-205ENST00000572809 USP17L4A6NCW7 530 aa9.36□□□□□ -0.91
NUP88-205ENST00000572809 TAF5LO75529 589 aa9.36□□□□□ -0.91
NUP88-205ENST00000572809 MS4A1P11836 297 aa9.36□□□□□ -0.91
NUP88-205ENST00000572809 KCNJ4P48050 445 aa9.36□□□□□ -0.91
NUP88-205ENST00000572809 FMR1Q06787 632 aaKnown RBP eCLIP9.36□□□□□ -0.91
NUP88-205ENST00000572809 DEFB115Q30KQ5 88 aa9.36□□□□□ -0.91
NUP88-205ENST00000572809 TBC1D10BQ4KMP7 808 aaPredicted RBP9.36□□□□□ -0.91
NUP88-205ENST00000572809 TAF7LQ5H9L4 462 aa9.36□□□□□ -0.91
NUP88-205ENST00000572809 RSBN1LQ6PCB5 846 aaPredicted RBP9.36□□□□□ -0.91
NUP88-205ENST00000572809 CDC37L1Q7L3B6 337 aa9.36□□□□□ -0.91
NUP88-205ENST00000572809 USP17L1Q7RTZ2 530 aa9.36□□□□□ -0.91
NUP88-205ENST00000572809 TXNRD3Q86VQ6 643 aa9.36□□□□□ -0.91
NUP88-205ENST00000572809 AGBL3Q8NEM8 1001 aa9.36□□□□□ -0.91
NUP88-205ENST00000572809 HELBQ8NG08 1087 aaPredicted RBP9.36□□□□□ -0.91
NUP88-205ENST00000572809 TRPM4Q8TD43 1214 aa9.36□□□□□ -0.91
NUP88-205ENST00000572809 SUCLG2Q96I99 432 aa9.36□□□□□ -0.91
NUP88-205ENST00000572809 ZNF594Q96JF6 807 aaPredicted RBP9.36□□□□□ -0.91
NUP88-205ENST00000572809 PCMTD1Q96MG8 357 aaPredicted RBP9.36□□□□□ -0.91
NUP88-205ENST00000572809 REPIN1Q9BWE0 567 aaKnown RBP9.36□□□□□ -0.91
NUP88-205ENST00000572809 COA1Q9GZY4 146 aa9.36□□□□□ -0.91
NUP88-205ENST00000572809 SMC4Q9NTJ3 1288 aa9.36□□□□□ -0.91
NUP88-205ENST00000572809 MED23Q9ULK4 1368 aa9.36□□□□□ -0.91
NUP88-205ENST00000572809 TRAF5O00463 557 aa9.35□□□□□ -0.91
NUP88-205ENST00000572809 ST8SIA5O15466 376 aa9.35□□□□□ -0.91
NUP88-205ENST00000572809 PLIN1O60240 522 aa9.35□□□□□ -0.91
NUP88-205ENST00000572809 GDF9O60383 454 aa9.35□□□□□ -0.91
NUP88-205ENST00000572809 S1PR4O95977 384 aa9.35□□□□□ -0.91
NUP88-205ENST00000572809 CST9Q5W186 159 aa9.35□□□□□ -0.91
NUP88-205ENST00000572809 KAZALD1Q96I82 304 aa9.35□□□□□ -0.91
NUP88-205ENST00000572809 GLIS2Q9BZE0 524 aaPredicted RBP9.35□□□□□ -0.91
NUP88-205ENST00000572809 USP44Q9H0E7 712 aa9.35□□□□□ -0.91
NUP88-205ENST00000572809 CNNM1Q9NRU3 951 aa9.35□□□□□ -0.91
NUP88-205ENST00000572809 NOB1Q9ULX3 412 aaKnown RBP9.35□□□□□ -0.91
NUP88-205ENST00000572809 RASSF10A6NK89 507 aa9.34□□□□□ -0.91
NUP88-205ENST00000572809 SNAP23O00161 211 aa9.34□□□□□ -0.91
NUP88-205ENST00000572809 EGFRP00533 1210 aa9.34□□□□□ -0.91
NUP88-205ENST00000572809 USP17L8P0C7I0 530 aa9.34□□□□□ -0.91
NUP88-205ENST00000572809 VEGFBP49765 207 aa9.34□□□□□ -0.91
NUP88-205ENST00000572809 STRIP1Q5VSL9 837 aa9.34□□□□□ -0.91
NUP88-205ENST00000572809 TTLL5Q6EMB2 1281 aa9.34□□□□□ -0.91
NUP88-205ENST00000572809 METTL3Q86U44 580 aaKnown RBP9.34□□□□□ -0.91
NUP88-205ENST00000572809 USP48Q86UV5 1035 aa9.34□□□□□ -0.91
NUP88-205ENST00000572809 DCPSQ96C86 337 aaKnown RBP9.34□□□□□ -0.91
NUP88-205ENST00000572809 PHOX2BQ99453 314 aa9.34□□□□□ -0.91
NUP88-205ENST00000572809 ZMYND15Q9H091 742 aa9.34□□□□□ -0.91
NUP88-205ENST00000572809 BICC1Q9H694 974 aaKnown RBP9.34□□□□□ -0.91
NUP88-205ENST00000572809 ABT1Q9ULW3 272 aaKnown RBP9.34□□□□□ -0.91
NUP88-205ENST00000572809 CNTNAP1P78357 1384 aa9.34□□□□□ -0.91
NUP88-205ENST00000572809 CELF2O95319 508 aaKnown RBP9.33□□□□□ -0.92
NUP88-205ENST00000572809 RARSP54136 660 aaKnown RBP9.33□□□□□ -0.92
NUP88-205ENST00000572809 ZNF280AP59817 542 aaPredicted RBP9.33□□□□□ -0.92
NUP88-205ENST00000572809 KIF4BQ2VIQ3 1234 aa9.33□□□□□ -0.92
NUP88-205ENST00000572809 RABL6Q3YEC7 729 aaPredicted RBP9.33□□□□□ -0.92
NUP88-205ENST00000572809 DACT2Q5SW24 774 aa9.33□□□□□ -0.92
NUP88-205ENST00000572809 LCE2AQ5TA79 106 aaPredicted RBP9.33□□□□□ -0.92
NUP88-205ENST00000572809 C15orf52Q6ZUT6 534 aaKnown RBP9.33□□□□□ -0.92
NUP88-205ENST00000572809 GMLQ99445 158 aa9.33□□□□□ -0.92
NUP88-205ENST00000572809 MXD3Q9BW11 206 aa9.33□□□□□ -0.92
NUP88-205ENST00000572809 PUS3Q9BZE2 481 aaKnown RBP9.33□□□□□ -0.92
NUP88-205ENST00000572809 API5Q9BZZ5 524 aaKnown RBP9.33□□□□□ -0.92
NUP88-205ENST00000572809 CD209Q9NNX6 404 aa9.33□□□□□ -0.92
NUP88-205ENST00000572809 ADGRG1Q9Y653 693 aa9.33□□□□□ -0.92
NUP88-205ENST00000572809 SPEF2Q9C093 1822 aa9.33□□□□□ -0.92
NUP88-205ENST00000572809 KLRK1P26718 216 aa9.32□□□□□ -0.92
NUP88-205ENST00000572809 GTF2IP78347 998 aa9.32□□□□□ -0.92
NUP88-205ENST00000572809 HNRNPUQ00839 825 aaKnown RBP eCLIP9.32□□□□□ -0.92
NUP88-205ENST00000572809 SCARF1Q14162 830 aa9.32□□□□□ -0.92
NUP88-205ENST00000572809 KRT26Q7Z3Y9 468 aa9.32□□□□□ -0.92
NUP88-205ENST00000572809 OGFOD1Q8N543 542 aa9.32□□□□□ -0.92
NUP88-205ENST00000572809 ANKRD44Q8N8A2 993 aa9.32□□□□□ -0.92
NUP88-205ENST00000572809 PXYLP1Q8TE99 480 aa9.32□□□□□ -0.92
NUP88-205ENST00000572809 ARHGAP45Q92619 1136 aa9.32□□□□□ -0.92
NUP88-205ENST00000572809 ZNF408Q9H9D4 720 aa9.32□□□□□ -0.92
NUP88-205ENST00000572809 MYOZ2Q9NPC6 264 aa9.32□□□□□ -0.92
NUP88-205ENST00000572809 AAASQ9NRG9 546 aa9.32□□□□□ -0.92
NUP88-205ENST00000572809 RIPOR2Q9Y4F9 1068 aa9.32□□□□□ -0.92
NUP88-205ENST00000572809 TLL2Q9Y6L7 1015 aa9.32□□□□□ -0.92
NUP88-205ENST00000572809 SCN9AQ15858 1988 aa9.32□□□□□ -0.92
NUP88-205ENST00000572809 MYO3BQ8WXR4 1341 aa9.31□□□□□ -0.92
NUP88-205ENST00000572809 WDR33Q9C0J8 1336 aaKnown RBP9.31□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms