RNA–Protein interactions for RNA: ENST00000570771.1

VPS53-209, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 366 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-209ENST00000570771 PPIL4Q8WUA2 492 aaKnown RBP eCLIP7.8□□□□□ -1.16
VPS53-209ENST00000570771 JDP2Q8WYK2 163 aa7.8□□□□□ -1.16
VPS53-209ENST00000570771 HAUS7Q99871 368 aa7.8□□□□□ -1.16
VPS53-209ENST00000570771 VPS33BQ9H267 617 aa7.8□□□□□ -1.16
VPS53-209ENST00000570771 GNL3LQ9NVN8 582 aaKnown RBP7.8□□□□□ -1.16
VPS53-209ENST00000570771 GPRC5DQ9NZD1 345 aa7.8□□□□□ -1.16
VPS53-209ENST00000570771 PDS5AQ29RF7 1337 aaKnown RBP7.79□□□□□ -1.16
VPS53-209ENST00000570771 SALL1Q9NSC2 1324 aa7.79□□□□□ -1.16
VPS53-209ENST00000570771 MAST2Q6P0Q8 1798 aa7.79□□□□□ -1.16
VPS53-209ENST00000570771 KIF3CO14782 793 aa7.79□□□□□ -1.16
VPS53-209ENST00000570771 CACNB3P54284 484 aa7.79□□□□□ -1.16
VPS53-209ENST00000570771 ZNF280AP59817 542 aaPredicted RBP7.79□□□□□ -1.16
VPS53-209ENST00000570771 MECOMQ03112 1051 aa7.79□□□□□ -1.16
VPS53-209ENST00000570771 NBPF9Q3BBW0 867 aa7.79□□□□□ -1.16
VPS53-209ENST00000570771 TICAM2Q86XR7 235 aa7.79□□□□□ -1.16
VPS53-209ENST00000570771 VPS37DQ86XT2 251 aa7.79□□□□□ -1.16
VPS53-209ENST00000570771 CNTROBQ8N137 903 aa7.79□□□□□ -1.16
VPS53-209ENST00000570771 GPC2Q8N158 579 aa7.79□□□□□ -1.16
VPS53-209ENST00000570771 NSUN4Q96CB9 384 aaKnown RBP7.79□□□□□ -1.16
VPS53-209ENST00000570771 SEC62Q99442 399 aaKnown RBP7.79□□□□□ -1.16
VPS53-209ENST00000570771 RRAGCQ9HB90 399 aa7.79□□□□□ -1.16
VPS53-209ENST00000570771 DAGLAQ9Y4D2 1042 aa7.79□□□□□ -1.16
VPS53-209ENST00000570771 MYH13Q9UKX3 1938 aa7.79□□□□□ -1.16
VPS53-209ENST00000570771 SSC5DA1L4H1 1573 aa7.79□□□□□ -1.16
VPS53-209ENST00000570771 ZC3H4Q9UPT8 1303 aaKnown RBP7.78□□□□□ -1.16
VPS53-209ENST00000570771 TRIM6-TRIM34B2RNG4 842 aa7.78□□□□□ -1.16
VPS53-209ENST00000570771 M0R2C6 588 aa7.78□□□□□ -1.16
VPS53-209ENST00000570771 HIP1O00291 1037 aa7.78□□□□□ -1.16
VPS53-209ENST00000570771 HOXB3P14651 431 aaPredicted RBP7.78□□□□□ -1.16
VPS53-209ENST00000570771 PDE6AP16499 860 aa7.78□□□□□ -1.16
VPS53-209ENST00000570771 EIF6P56537 245 aaKnown RBP7.78□□□□□ -1.16
VPS53-209ENST00000570771 DYNLL1P63167 89 aaKnown RBP7.78□□□□□ -1.16
VPS53-209ENST00000570771 TTF1Q15361 905 aaPredicted RBP7.78□□□□□ -1.16
VPS53-209ENST00000570771 APOBEC3HQ6NTF7 200 aaKnown RBP7.78□□□□□ -1.16
VPS53-209ENST00000570771 ZFPM1Q8IX07 1006 aa7.78□□□□□ -1.16
VPS53-209ENST00000570771 EVI5LQ96CN4 794 aa7.78□□□□□ -1.16
VPS53-209ENST00000570771 FAM212AQ96EL1 285 aa7.78□□□□□ -1.16
VPS53-209ENST00000570771 PRMT6Q96LA8 375 aaPredicted RBP7.78□□□□□ -1.16
VPS53-209ENST00000570771 TAF1DQ9H5J8 278 aaPredicted RBP7.78□□□□□ -1.16
VPS53-209ENST00000570771 PAG1Q9NWQ8 432 aa7.78□□□□□ -1.16
VPS53-209ENST00000570771 ABCF2Q9UG63 623 aa7.78□□□□□ -1.16
VPS53-209ENST00000570771 CNOT7Q9UIV1 285 aaKnown RBP7.78□□□□□ -1.16
VPS53-209ENST00000570771 DENND2AQ9ULE3 1009 aa7.78□□□□□ -1.16
VPS53-209ENST00000570771 TTF2Q9UNY4 1162 aaKnown RBP7.78□□□□□ -1.16
VPS53-209ENST00000570771 GAKO14976 1311 aa7.78□□□□□ -1.16
VPS53-209ENST00000570771 CNTNAP1P78357 1384 aa7.77□□□□□ -1.17
VPS53-209ENST00000570771 A0A0D9SFI3 127 aa7.77□□□□□ -1.17
VPS53-209ENST00000570771 CLRN2A0PK11 232 aa7.77□□□□□ -1.17
VPS53-209ENST00000570771 SEMA3EO15041 775 aa7.77□□□□□ -1.17
VPS53-209ENST00000570771 CDC45O75419 566 aa7.77□□□□□ -1.17
VPS53-209ENST00000570771 FRAT2O75474 233 aaPredicted RBP7.77□□□□□ -1.17
VPS53-209ENST00000570771 HOXB1P14653 301 aaPredicted RBP7.77□□□□□ -1.17
VPS53-209ENST00000570771 SDSP20132 328 aa7.77□□□□□ -1.17
VPS53-209ENST00000570771 YY1P25490 414 aa7.77□□□□□ -1.17
VPS53-209ENST00000570771 CRKP46108 304 aa7.77□□□□□ -1.17
VPS53-209ENST00000570771 RHBDL3P58872 404 aa7.77□□□□□ -1.17
VPS53-209ENST00000570771 NFIAQ12857 509 aa7.77□□□□□ -1.17
VPS53-209ENST00000570771 CFAP100Q494V2 611 aa7.77□□□□□ -1.17
VPS53-209ENST00000570771 RBM26Q5T8P6 1007 aaKnown RBP7.77□□□□□ -1.17
VPS53-209ENST00000570771 CCDC129Q6ZRS4 1044 aa7.77□□□□□ -1.17
VPS53-209ENST00000570771 ZNF589Q86UQ0 364 aaPredicted RBP7.77□□□□□ -1.17
VPS53-209ENST00000570771 MIGA1Q8NAN2 632 aa7.77□□□□□ -1.17
VPS53-209ENST00000570771 NKX2-3Q8TAU0 364 aa7.77□□□□□ -1.17
VPS53-209ENST00000570771 OSBP2Q969R2 916 aa7.77□□□□□ -1.17
VPS53-209ENST00000570771 RILPL2Q969X0 211 aa7.77□□□□□ -1.17
VPS53-209ENST00000570771 FAM227BQ96M60 508 aa7.77□□□□□ -1.17
VPS53-209ENST00000570771 DDX4Q9NQI0 724 aaKnown RBP7.77□□□□□ -1.17
VPS53-209ENST00000570771 FZD1Q9UP38 647 aa7.77□□□□□ -1.17
VPS53-209ENST00000570771 DDX60LQ5H9U9 1706 aaKnown RBP7.76□□□□□ -1.17
VPS53-209ENST00000570771 ADM5C9JUS6 153 aa7.76□□□□□ -1.17
VPS53-209ENST00000570771 G3V3G9 751 aa7.76□□□□□ -1.17
VPS53-209ENST00000570771 TRAF5O00463 557 aa7.76□□□□□ -1.17
VPS53-209ENST00000570771 WNT10BO00744 389 aa7.76□□□□□ -1.17
VPS53-209ENST00000570771 PRKAB2O43741 272 aa7.76□□□□□ -1.17
VPS53-209ENST00000570771 IGSF3O75054 1194 aa7.76□□□□□ -1.17
VPS53-209ENST00000570771 IDH1O75874 414 aaKnown RBP7.76□□□□□ -1.17
VPS53-209ENST00000570771 USP17L8P0C7I0 530 aa7.76□□□□□ -1.17
VPS53-209ENST00000570771 EPHX2P34913 555 aa7.76□□□□□ -1.17
VPS53-209ENST00000570771 ADD2P35612 726 aa7.76□□□□□ -1.17
VPS53-209ENST00000570771 FKBP1AP62942 108 aaKnown RBP7.76□□□□□ -1.17
VPS53-209ENST00000570771 COL9A3Q14050 684 aaPredicted RBP7.76□□□□□ -1.17
VPS53-209ENST00000570771 KIF4BQ2VIQ3 1234 aa7.76□□□□□ -1.17
VPS53-209ENST00000570771 DCAF8Q5TAQ9 597 aa7.76□□□□□ -1.17
VPS53-209ENST00000570771 PRAMEF18Q5VWM3 479 aa7.76□□□□□ -1.17
VPS53-209ENST00000570771 SH3BP5LQ7L8J4 393 aa7.76□□□□□ -1.17
VPS53-209ENST00000570771 LCORLQ8N3X6 602 aa7.76□□□□□ -1.17
VPS53-209ENST00000570771 MAGEB6Q8N7X4 407 aa7.76□□□□□ -1.17
VPS53-209ENST00000570771 KBTBD3Q8NAB2 608 aa7.76□□□□□ -1.17
VPS53-209ENST00000570771 AGBL3Q8NEM8 1001 aa7.76□□□□□ -1.17
VPS53-209ENST00000570771 RUFY2Q8WXA3 655 aa7.76□□□□□ -1.17
VPS53-209ENST00000570771 DPF2Q92785 391 aa7.76□□□□□ -1.17
VPS53-209ENST00000570771 RIOK1Q9BRS2 568 aaKnown RBP7.76□□□□□ -1.17
VPS53-209ENST00000570771 PUS7LQ9H0K6 701 aaKnown RBP7.76□□□□□ -1.17
VPS53-209ENST00000570771 UPF2Q9HAU5 1272 aaKnown RBP7.76□□□□□ -1.17
VPS53-209ENST00000570771 MYOZ2Q9NPC6 264 aa7.76□□□□□ -1.17
VPS53-209ENST00000570771 PGAP2Q9UHJ9 254 aa7.76□□□□□ -1.17
VPS53-209ENST00000570771 MYH7P12883 1935 aa7.76□□□□□ -1.17
VPS53-209ENST00000570771 MROH7-TTC4A0A0A0MT08 1334 aa7.76□□□□□ -1.17
VPS53-209ENST00000570771 MAST3O60307 1309 aa7.76□□□□□ -1.17
VPS53-209ENST00000570771 ZNF532Q9HCE3 1301 aa7.76□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms