RNA–Protein interactions for RNA: ENST00000568472.6

CLN3-234, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 1,011 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-234ENST00000568472 DEFB129Q9H1M3 183 aa26.65■■□□□ 1.86
CLN3-234ENST00000568472 ADM5C9JUS6 153 aa26.64■■□□□ 1.86
CLN3-234ENST00000568472 HSPA6P17066 643 aa26.64■■□□□ 1.86
CLN3-234ENST00000568472 ZSCAN25Q6NSZ9 544 aa26.64■■□□□ 1.86
CLN3-234ENST00000568472 USP40Q9NVE5 1235 aa26.64■■□□□ 1.86
CLN3-234ENST00000568472 TRAF5O00463 557 aa26.63■■□□□ 1.85
CLN3-234ENST00000568472 PLCG2P16885 1265 aa26.63■■□□□ 1.85
CLN3-234ENST00000568472 BTDP43251 543 aa26.63■■□□□ 1.85
CLN3-234ENST00000568472 LRRFIP1Q32MZ4 808 aaKnown RBP26.63■■□□□ 1.85
CLN3-234ENST00000568472 CDC42EP5Q6NZY7 148 aa26.63■■□□□ 1.85
CLN3-234ENST00000568472 FAM83AQ86UY5 434 aa26.63■■□□□ 1.85
CLN3-234ENST00000568472 CCDC136Q96JN2 1154 aa26.63■■□□□ 1.85
CLN3-234ENST00000568472 OSBPL3Q9H4L5 887 aa26.63■■□□□ 1.85
CLN3-234ENST00000568472 CYP7A1P22680 504 aa26.62■■□□□ 1.85
CLN3-234ENST00000568472 PPP4CP60510 307 aa26.62■■□□□ 1.85
CLN3-234ENST00000568472 SLC9C2Q5TAH2 1124 aa26.62■■□□□ 1.85
CLN3-234ENST00000568472 TSHZ3Q63HK5 1081 aa26.62■■□□□ 1.85
CLN3-234ENST00000568472 MAGEB6Q8N7X4 407 aa26.62■■□□□ 1.85
CLN3-234ENST00000568472 TMEM88BA6NKF7 163 aa26.61■■□□□ 1.85
CLN3-234ENST00000568472 CDCA5Q96FF9 252 aa26.61■■□□□ 1.85
CLN3-234ENST00000568472 NF2P35240 595 aa26.6■■□□□ 1.85
CLN3-234ENST00000568472 RASA3Q14644 834 aa26.6■■□□□ 1.85
CLN3-234ENST00000568472 SUPT20HL1Q3ZLR7 823 aa26.6■■□□□ 1.85
CLN3-234ENST00000568472 TICAM2Q86XR7 235 aa26.6■■□□□ 1.85
CLN3-234ENST00000568472 PLEKHM2Q8IWE5 1019 aa26.6■■□□□ 1.85
CLN3-234ENST00000568472 KBTBD3Q8NAB2 608 aa26.6■■□□□ 1.85
CLN3-234ENST00000568472 EDC3Q96F86 508 aaKnown RBP26.6■■□□□ 1.85
CLN3-234ENST00000568472 IDI2Q9BXS1 227 aa26.6■■□□□ 1.85
CLN3-234ENST00000568472 TCP10L2B9ZVM9 353 aa26.59■■□□□ 1.85
CLN3-234ENST00000568472 NPM3O75607 178 aaKnown RBP26.59■■□□□ 1.85
CLN3-234ENST00000568472 CELF2O95319 508 aaKnown RBP26.59■■□□□ 1.85
CLN3-234ENST00000568472 PDE6AP16499 860 aa26.59■■□□□ 1.85
CLN3-234ENST00000568472 CREBZFQ9NS37 354 aa26.59■■□□□ 1.85
CLN3-234ENST00000568472 ZFYP08048 801 aaPredicted RBP26.58■■□□□ 1.85
CLN3-234ENST00000568472 UBE3CQ15386 1083 aa26.58■■□□□ 1.85
CLN3-234ENST00000568472 CST9Q5W186 159 aa26.58■■□□□ 1.85
CLN3-234ENST00000568472 ADD2P35612 726 aa26.57■■□□□ 1.84
CLN3-234ENST00000568472 RHBDL3P58872 404 aa26.57■■□□□ 1.84
CLN3-234ENST00000568472 FKBP1BP68106 108 aa26.57■■□□□ 1.84
CLN3-234ENST00000568472 FAM151AQ8WW52 585 aa26.57■■□□□ 1.84
CLN3-234ENST00000568472 HOOK2Q96ED9 719 aa26.57■■□□□ 1.84
CLN3-234ENST00000568472 ENTPD3O75355 529 aa26.56■■□□□ 1.84
CLN3-234ENST00000568472 CACNB3P54284 484 aa26.56■■□□□ 1.84
CLN3-234ENST00000568472 C2orf69Q8N8R5 385 aa26.56■■□□□ 1.84
CLN3-234ENST00000568472 EVI5LQ96CN4 794 aa26.56■■□□□ 1.84
CLN3-234ENST00000568472 PPP4R2Q9NY27 417 aa26.56■■□□□ 1.84
CLN3-234ENST00000568472 AATFQ9NY61 560 aaKnown RBP eCLIP26.56■■□□□ 1.84
CLN3-234ENST00000568472 SCAF8Q9UPN6 1271 aaKnown RBP26.56■■□□□ 1.84
CLN3-234ENST00000568472 ZNF532Q9HCE3 1301 aa26.56■■□□□ 1.84
CLN3-234ENST00000568472 ECM29Q5VYK3 1845 aa26.55■■□□□ 1.84
CLN3-234ENST00000568472 MYH2Q9UKX2 1941 aa26.55■■□□□ 1.84
CLN3-234ENST00000568472 TCRBV5S4A2TA0A5A2 114 aa26.55■■□□□ 1.84
CLN3-234ENST00000568472 FMR1Q06787 632 aaKnown RBP eCLIP26.55■■□□□ 1.84
CLN3-234ENST00000568472 ADGRA1Q86SQ6 560 aa26.55■■□□□ 1.84
CLN3-234ENST00000568472 ZNF408Q9H9D4 720 aa26.55■■□□□ 1.84
CLN3-234ENST00000568472 MAST2Q6P0Q8 1798 aa26.55■■□□□ 1.84
CLN3-234ENST00000568472 WDHD1O75717 1129 aaPredicted RBP26.54■■□□□ 1.84
CLN3-234ENST00000568472 DLK2Q6UY11 383 aa26.54■■□□□ 1.84
CLN3-234ENST00000568472 TEX11Q8IYF3 940 aa26.54■■□□□ 1.84
CLN3-234ENST00000568472 CNTNAP1P78357 1384 aa26.54■■□□□ 1.84
CLN3-234ENST00000568472 PRAMEF18Q5VWM3 479 aa26.53■■□□□ 1.84
CLN3-234ENST00000568472 TMEM39BQ9GZU3 492 aa26.53■■□□□ 1.84
CLN3-234ENST00000568472 GBA2Q9HCG7 927 aaPredicted RBP26.53■■□□□ 1.84
CLN3-234ENST00000568472 FAM198AQ9UFP1 575 aa26.53■■□□□ 1.84
CLN3-234ENST00000568472 RPAP1Q9BWH6 1393 aaPredicted RBP26.53■■□□□ 1.84
CLN3-234ENST00000568472 DOCK2Q92608 1830 aa26.53■■□□□ 1.84
CLN3-234ENST00000568472 MAGEB6P1A0A0J9YX57 407 aa26.52■■□□□ 1.84
CLN3-234ENST00000568472 RNF113AO15541 343 aaKnown RBP26.52■■□□□ 1.84
CLN3-234ENST00000568472 RGS3P49796 1198 aa26.52■■□□□ 1.84
CLN3-234ENST00000568472 NFIAQ12857 509 aa26.52■■□□□ 1.84
CLN3-234ENST00000568472 SH3RF3Q8TEJ3 882 aaPredicted RBP26.52■■□□□ 1.84
CLN3-234ENST00000568472 TEPSINQ96N21 525 aa26.52■■□□□ 1.84
CLN3-234ENST00000568472 FSD1Q9BTV5 496 aa26.52■■□□□ 1.84
CLN3-234ENST00000568472 POLR2AP24928 1970 aaKnown RBP26.51■■□□□ 1.83
CLN3-234ENST00000568472 RFX7Q2KHR2 1363 aa26.51■■□□□ 1.83
CLN3-234ENST00000568472 PPP1R12BO60237 982 aaPredicted RBP26.51■■□□□ 1.83
CLN3-234ENST00000568472 PDE4AP27815 886 aa26.51■■□□□ 1.83
CLN3-234ENST00000568472 MIGA1Q8NAN2 632 aa26.51■■□□□ 1.83
CLN3-234ENST00000568472 TCP10Q12799 353 aa26.5■■□□□ 1.83
CLN3-234ENST00000568472 NBPF12Q5TAG4 269 aaPredicted RBP26.5■■□□□ 1.83
CLN3-234ENST00000568472 HHIPL1Q96JK4 782 aa26.5■■□□□ 1.83
CLN3-234ENST00000568472 RIOK1Q9BRS2 568 aaKnown RBP26.5■■□□□ 1.83
CLN3-234ENST00000568472 ABT1Q9ULW3 272 aaKnown RBP26.5■■□□□ 1.83
CLN3-234ENST00000568472 TLL2Q9Y6L7 1015 aa26.5■■□□□ 1.83
CLN3-234ENST00000568472 ARMC9Q7Z3E5 817 aa26.49■■□□□ 1.83
CLN3-234ENST00000568472 APPBP2Q92624 585 aa26.49■■□□□ 1.83
CLN3-234ENST00000568472 UNCXA6NJT0 531 aa26.48■■□□□ 1.83
CLN3-234ENST00000568472 TRIM6-TRIM34B2RNG4 842 aa26.48■■□□□ 1.83
CLN3-234ENST00000568472 DYNLL1P63167 89 aaKnown RBP26.48■■□□□ 1.83
CLN3-234ENST00000568472 PICALMQ13492 652 aa26.48■■□□□ 1.83
CLN3-234ENST00000568472 SAPCD2Q86UD0 394 aa26.48■■□□□ 1.83
CLN3-234ENST00000568472 CRNKL1Q9BZJ0 848 aaKnown RBP26.48■■□□□ 1.83
CLN3-234ENST00000568472 TTLL12Q14166 644 aaPredicted RBP26.47■■□□□ 1.83
CLN3-234ENST00000568472 DCAF15Q66K64 600 aa26.47■■□□□ 1.83
CLN3-234ENST00000568472 TGFBRAP1Q8WUH2 860 aa26.47■■□□□ 1.83
CLN3-234ENST00000568472 AIDAQ96BJ3 306 aa26.47■■□□□ 1.83
CLN3-234ENST00000568472 DHX36Q9H2U1 1008 aaKnown RBP26.47■■□□□ 1.83
CLN3-234ENST00000568472 DDX4Q9NQI0 724 aaKnown RBP26.47■■□□□ 1.83
CLN3-234ENST00000568472 TRPM7Q96QT4 1865 aa26.47■■□□□ 1.83
CLN3-234ENST00000568472 MAP3K11Q16584 847 aa26.46■■□□□ 1.83
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms