RNA–Protein interactions for RNA: ENST00000568191.1

VPS35-207, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 520 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-207ENST00000568191 PRR19A6NJB7 356 aa5.43□□□□□ -1.54
VPS35-207ENST00000568191 TREHO43280 583 aa5.43□□□□□ -1.54
VPS35-207ENST00000568191 IGHA2P01877 340 aa5.43□□□□□ -1.54
VPS35-207ENST00000568191 MAPK8P45983 427 aa5.43□□□□□ -1.54
VPS35-207ENST00000568191 IRAK1P51617 712 aa5.43□□□□□ -1.54
VPS35-207ENST00000568191 FGD1P98174 961 aa5.43□□□□□ -1.54
VPS35-207ENST00000568191 LARP7Q4G0J3 582 aaKnown RBP eCLIP5.43□□□□□ -1.54
VPS35-207ENST00000568191 TRIM56Q9BRZ2 755 aaKnown RBP5.43□□□□□ -1.54
VPS35-207ENST00000568191 CEP44Q9C0F1 390 aa5.43□□□□□ -1.54
VPS35-207ENST00000568191 KRT82Q9NSB4 513 aa5.43□□□□□ -1.54
VPS35-207ENST00000568191 ACTL7BQ9Y614 415 aa5.43□□□□□ -1.54
VPS35-207ENST00000568191 CYP26A1O43174 497 aa5.42□□□□□ -1.54
VPS35-207ENST00000568191 NFICP08651 508 aa5.42□□□□□ -1.54
VPS35-207ENST00000568191 GSTP1P09211 210 aaKnown RBP5.42□□□□□ -1.54
VPS35-207ENST00000568191 FOSL1P15407 271 aa5.42□□□□□ -1.54
VPS35-207ENST00000568191 GSTT1P30711 240 aa5.42□□□□□ -1.54
VPS35-207ENST00000568191 ZNF157P51786 506 aaPredicted RBP5.42□□□□□ -1.54
VPS35-207ENST00000568191 ENOX2Q16206 610 aaKnown RBP5.42□□□□□ -1.54
VPS35-207ENST00000568191 CYP27C1Q4G0S4 372 aa5.42□□□□□ -1.54
VPS35-207ENST00000568191 ZAR1Q86SH2 424 aa5.42□□□□□ -1.54
VPS35-207ENST00000568191 KCNB2Q92953 911 aa5.42□□□□□ -1.54
VPS35-207ENST00000568191 PRKAG2Q9UGJ0 569 aa5.42□□□□□ -1.54
VPS35-207ENST00000568191 SPG7Q9UQ90 795 aa5.42□□□□□ -1.54
VPS35-207ENST00000568191 IVNS1ABPQ9Y6Y0 642 aa5.42□□□□□ -1.54
VPS35-207ENST00000568191 F13BP05160 661 aa5.41□□□□□ -1.54
VPS35-207ENST00000568191 GP2P55259 537 aaKnown RBP5.41□□□□□ -1.54
VPS35-207ENST00000568191 ID3Q02535 119 aa5.41□□□□□ -1.54
VPS35-207ENST00000568191 DSC3Q14574 896 aa5.41□□□□□ -1.54
VPS35-207ENST00000568191 DTX1Q86Y01 620 aa5.41□□□□□ -1.54
VPS35-207ENST00000568191 KRTAP1-3Q8IUG1 177 aa5.41□□□□□ -1.54
VPS35-207ENST00000568191 GLIS3Q8NEA6 775 aa5.41□□□□□ -1.54
VPS35-207ENST00000568191 ASB16Q96NS5 453 aa5.41□□□□□ -1.54
VPS35-207ENST00000568191 WDR18Q9BV38 432 aa5.41□□□□□ -1.54
VPS35-207ENST00000568191 TRAIPQ9BWF2 469 aa5.41□□□□□ -1.54
VPS35-207ENST00000568191 SSU72Q9NP77 194 aaKnown RBP5.41□□□□□ -1.54
VPS35-207ENST00000568191 DAGLAQ9Y4D2 1042 aa5.41□□□□□ -1.54
VPS35-207ENST00000568191 PAX4O43316 350 aa5.4□□□□□ -1.54
VPS35-207ENST00000568191 MED26O95402 600 aa5.4□□□□□ -1.54
VPS35-207ENST00000568191 LIG1P18858 919 aa5.4□□□□□ -1.54
VPS35-207ENST00000568191 SPINK2P20155 84 aa5.4□□□□□ -1.54
VPS35-207ENST00000568191 ARNTP27540 789 aa5.4□□□□□ -1.54
VPS35-207ENST00000568191 NXPE4Q6UWF7 544 aa5.4□□□□□ -1.54
VPS35-207ENST00000568191 ACSBG1Q96GR2 724 aa5.4□□□□□ -1.54
VPS35-207ENST00000568191 FBXL18Q96ME1 805 aa5.4□□□□□ -1.54
VPS35-207ENST00000568191 FRMD6Q96NE9 622 aa5.4□□□□□ -1.54
VPS35-207ENST00000568191 ZC3H12CQ9C0D7 883 aaKnown RBP5.4□□□□□ -1.54
VPS35-207ENST00000568191 SEMA6CQ9H3T2 930 aa5.4□□□□□ -1.54
VPS35-207ENST00000568191 CCDC86Q9H6F5 360 aaKnown RBP5.4□□□□□ -1.54
VPS35-207ENST00000568191 ACSS3Q9H6R3 686 aa5.4□□□□□ -1.54
VPS35-207ENST00000568191 CBX8Q9HC52 389 aa5.4□□□□□ -1.54
VPS35-207ENST00000568191 FAM105AQ9NUU6 356 aa5.4□□□□□ -1.54
VPS35-207ENST00000568191 PPM1HQ9ULR3 514 aa5.4□□□□□ -1.54
VPS35-207ENST00000568191 RNGTTO60942 597 aaKnown RBP5.39□□□□□ -1.55
VPS35-207ENST00000568191 CTSBP07858 339 aa5.39□□□□□ -1.55
VPS35-207ENST00000568191 NME2P22392 152 aa5.39□□□□□ -1.55
VPS35-207ENST00000568191 FAAP100Q0VG06 881 aa5.39□□□□□ -1.55
VPS35-207ENST00000568191 LRRC14Q15048 493 aa5.39□□□□□ -1.55
VPS35-207ENST00000568191 SULF2Q8IWU5 870 aa5.39□□□□□ -1.55
VPS35-207ENST00000568191 GSX1Q9H4S2 264 aaPredicted RBP5.39□□□□□ -1.55
VPS35-207ENST00000568191 PICK1Q9NRD5 415 aa5.39□□□□□ -1.55
VPS35-207ENST00000568191 BSDC1Q9NW68 430 aaPredicted RBP5.39□□□□□ -1.55
VPS35-207ENST00000568191 CRIM1Q9NZV1 1036 aa5.39□□□□□ -1.55
VPS35-207ENST00000568191 ECEL1O95672 775 aa5.38□□□□□ -1.55
VPS35-207ENST00000568191 KIF4BQ2VIQ3 1234 aa5.38□□□□□ -1.55
VPS35-207ENST00000568191 OGFOD3Q6PK18 319 aa5.38□□□□□ -1.55
VPS35-207ENST00000568191 PI16Q6UXB8 463 aa5.38□□□□□ -1.55
VPS35-207ENST00000568191 ARHGAP27Q6ZUM4 889 aa5.38□□□□□ -1.55
VPS35-207ENST00000568191 VSIG10LQ86VR7 867 aa5.38□□□□□ -1.55
VPS35-207ENST00000568191 SMYD4Q8IYR2 804 aaPredicted RBP5.38□□□□□ -1.55
VPS35-207ENST00000568191 LRRC4CQ9HCJ2 640 aa5.38□□□□□ -1.55
VPS35-207ENST00000568191 PCOLCE2Q9UKZ9 415 aa5.38□□□□□ -1.55
VPS35-207ENST00000568191 PPP1R9AQ9ULJ8 1098 aa5.38□□□□□ -1.55
VPS35-207ENST00000568191 TMPRSS2O15393 492 aa5.37□□□□□ -1.55
VPS35-207ENST00000568191 ADMP35318 185 aa5.37□□□□□ -1.55
VPS35-207ENST00000568191 FMR1Q06787 632 aaKnown RBP eCLIP5.37□□□□□ -1.55
VPS35-207ENST00000568191 MAP1SQ66K74 1059 aaPredicted RBP5.37□□□□□ -1.55
VPS35-207ENST00000568191 DIEXFQ68CQ4 756 aaKnown RBP5.37□□□□□ -1.55
VPS35-207ENST00000568191 SCARA3Q6AZY7 606 aa5.37□□□□□ -1.55
VPS35-207ENST00000568191 MCTP1Q6DN14 999 aa5.37□□□□□ -1.55
VPS35-207ENST00000568191 TP53INP2Q8IXH6 220 aa5.37□□□□□ -1.55
VPS35-207ENST00000568191 FANCD2OSQ96PS1 177 aa5.37□□□□□ -1.55
VPS35-207ENST00000568191 FAM8A1Q9UBU6 413 aa5.37□□□□□ -1.55
VPS35-207ENST00000568191 COL17A1Q9UMD9 1497 aaPredicted RBP5.37□□□□□ -1.55
VPS35-207ENST00000568191 FAM170BA6NMN3 283 aa5.36□□□□□ -1.55
VPS35-207ENST00000568191 ZNF862O60290 1169 aa5.36□□□□□ -1.55
VPS35-207ENST00000568191 PDIA4P13667 645 aaKnown RBP5.36□□□□□ -1.55
VPS35-207ENST00000568191 LMNB1P20700 586 aa5.36□□□□□ -1.55
VPS35-207ENST00000568191 HOXA10P31260 410 aaPredicted RBP5.36□□□□□ -1.55
VPS35-207ENST00000568191 TPTE2Q6XPS3 522 aa5.36□□□□□ -1.55
VPS35-207ENST00000568191 PHF6Q8IWS0 365 aaKnown RBP eCLIP5.36□□□□□ -1.55
VPS35-207ENST00000568191 STK11IPQ8N1F8 1099 aa5.36□□□□□ -1.55
VPS35-207ENST00000568191 AGBL5Q8NDL9 886 aa5.36□□□□□ -1.55
VPS35-207ENST00000568191 NECAB3Q96P71 396 aaPredicted RBP5.36□□□□□ -1.55
VPS35-207ENST00000568191 LGR6Q9HBX8 967 aa5.36□□□□□ -1.55
VPS35-207ENST00000568191 OAS3Q9Y6K5 1087 aaKnown RBP5.36□□□□□ -1.55
VPS35-207ENST00000568191 PRNPP04156 253 aa5.35□□□□□ -1.55
VPS35-207ENST00000568191 LDHBP07195 334 aaKnown RBP5.35□□□□□ -1.55
VPS35-207ENST00000568191 TXKP42681 527 aa5.35□□□□□ -1.55
VPS35-207ENST00000568191 LLGL2Q6P1M3 1020 aa5.35□□□□□ -1.55
VPS35-207ENST00000568191 ZNF765Q7L2R6 523 aa5.35□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 45.9 ms