RNA–Protein interactions for RNA: ENST00000566816.1

CLN3-224, Transcript of CLN3, battenin, humanhuman

TSL 4

Gene CLN3, Length 570 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-224ENST00000566816 KIF3CO14782 793 aa13.38□□□□□ -0.27
CLN3-224ENST00000566816 EGFRP00533 1210 aa13.38□□□□□ -0.27
CLN3-224ENST00000566816 RGS3P49796 1198 aa13.38□□□□□ -0.27
CLN3-224ENST00000566816 RHBDL3P58872 404 aa13.38□□□□□ -0.27
CLN3-224ENST00000566816 RBM26Q5T8P6 1007 aaKnown RBP13.38□□□□□ -0.27
CLN3-224ENST00000566816 CDC42EP5Q6NZY7 148 aa13.38□□□□□ -0.27
CLN3-224ENST00000566816 FAM83AQ86UY5 434 aa13.38□□□□□ -0.27
CLN3-224ENST00000566816 RIOK1Q9BRS2 568 aaKnown RBP13.38□□□□□ -0.27
CLN3-224ENST00000566816 TOMM70O94826 608 aa13.37□□□□□ -0.27
CLN3-224ENST00000566816 BTDP43251 543 aa13.37□□□□□ -0.27
CLN3-224ENST00000566816 TNFAIP1Q13829 316 aa13.37□□□□□ -0.27
CLN3-224ENST00000566816 ADGRA1Q86SQ6 560 aa13.37□□□□□ -0.27
CLN3-224ENST00000566816 APOBEC3FQ8IUX4 373 aaKnown RBP13.37□□□□□ -0.27
CLN3-224ENST00000566816 DCPSQ96C86 337 aaKnown RBP13.37□□□□□ -0.27
CLN3-224ENST00000566816 USP40Q9NVE5 1235 aa13.37□□□□□ -0.27
CLN3-224ENST00000566816 TMOD2Q9NZR1 351 aa13.37□□□□□ -0.27
CLN3-224ENST00000566816 ZNF70Q9UC06 446 aaPredicted RBP13.37□□□□□ -0.27
CLN3-224ENST00000566816 PPP2R3BQ9Y5P8 575 aa13.37□□□□□ -0.27
CLN3-224ENST00000566816 RPAP1Q9BWH6 1393 aaPredicted RBP13.36□□□□□ -0.27
CLN3-224ENST00000566816 MAGEB6P1A0A0J9YX57 407 aa13.36□□□□□ -0.27
CLN3-224ENST00000566816 ENTPD3O75355 529 aa13.36□□□□□ -0.27
CLN3-224ENST00000566816 GNAT2P19087 354 aa13.36□□□□□ -0.27
CLN3-224ENST00000566816 TNNI2P48788 182 aa13.36□□□□□ -0.27
CLN3-224ENST00000566816 MCMDC2Q4G0Z9 681 aa13.36□□□□□ -0.27
CLN3-224ENST00000566816 GIMAP6Q6P9H5 292 aa13.36□□□□□ -0.27
CLN3-224ENST00000566816 CDC37L1Q7L3B6 337 aa13.36□□□□□ -0.27
CLN3-224ENST00000566816 RBM46Q8TBY0 533 aaKnown RBP13.36□□□□□ -0.27
CLN3-224ENST00000566816 ZNF526Q8TF50 670 aaPredicted RBP13.36□□□□□ -0.27
CLN3-224ENST00000566816 OSBP2Q969R2 916 aa13.36□□□□□ -0.27
CLN3-224ENST00000566816 TDRD3Q9H7E2 651 aaKnown RBP13.36□□□□□ -0.27
CLN3-224ENST00000566816 TAOK2Q9UL54 1235 aa13.36□□□□□ -0.27
CLN3-224ENST00000566816 MYH13Q9UKX3 1938 aa13.36□□□□□ -0.27
CLN3-224ENST00000566816 WDHD1O75717 1129 aaPredicted RBP13.35□□□□□ -0.27
CLN3-224ENST00000566816 CHMLP26374 656 aa13.35□□□□□ -0.27
CLN3-224ENST00000566816 MFAP1P55081 439 aaKnown RBP13.35□□□□□ -0.27
CLN3-224ENST00000566816 EAPPQ56P03 285 aaPredicted RBP13.35□□□□□ -0.27
CLN3-224ENST00000566816 ANGEL2Q5VTE6 544 aaKnown RBP13.35□□□□□ -0.27
CLN3-224ENST00000566816 CHADLQ6NUI6 762 aa13.35□□□□□ -0.27
CLN3-224ENST00000566816 RUFY2Q8WXA3 655 aa13.35□□□□□ -0.27
CLN3-224ENST00000566816 AIDAQ96BJ3 306 aa13.35□□□□□ -0.27
CLN3-224ENST00000566816 STRBPQ96SI9 672 aaKnown RBP13.35□□□□□ -0.27
CLN3-224ENST00000566816 CRNKL1Q9BZJ0 848 aaKnown RBP13.35□□□□□ -0.27
CLN3-224ENST00000566816 PUS7LQ9H0K6 701 aaKnown RBP13.35□□□□□ -0.27
CLN3-224ENST00000566816 ATP8A2Q9NTI2 1148 aa13.35□□□□□ -0.27
CLN3-224ENST00000566816 AATFQ9NY61 560 aaKnown RBP eCLIP13.35□□□□□ -0.27
CLN3-224ENST00000566816 PCDHAC2Q9Y5I4 1007 aa13.35□□□□□ -0.27
CLN3-224ENST00000566816 FSTL1Q12841 308 aa13.34□□□□□ -0.27
CLN3-224ENST00000566816 SKAP1Q86WV1 359 aa13.34□□□□□ -0.27
CLN3-224ENST00000566816 SULF1Q8IWU6 871 aa13.34□□□□□ -0.27
CLN3-224ENST00000566816 FAM151AQ8WW52 585 aa13.34□□□□□ -0.27
CLN3-224ENST00000566816 DIAPH3Q9NSV4 1193 aa13.34□□□□□ -0.27
CLN3-224ENST00000566816 MKRN1Q9UHC7 482 aaKnown RBP13.34□□□□□ -0.27
CLN3-224ENST00000566816 CLEC11AQ9Y240 323 aa13.34□□□□□ -0.27
CLN3-224ENST00000566816 RAD50Q92878 1312 aa13.34□□□□□ -0.27
CLN3-224ENST00000566816 DOCK2Q92608 1830 aa13.34□□□□□ -0.27
CLN3-224ENST00000566816 PATL2C9JE40 543 aaKnown RBP13.33□□□□□ -0.28
CLN3-224ENST00000566816 GPAA1O43292 621 aa13.33□□□□□ -0.28
CLN3-224ENST00000566816 EIF5BO60841 1220 aaKnown RBP13.33□□□□□ -0.28
CLN3-224ENST00000566816 DYNLL1P63167 89 aaKnown RBP13.33□□□□□ -0.28
CLN3-224ENST00000566816 TEX11Q8IYF3 940 aa13.33□□□□□ -0.28
CLN3-224ENST00000566816 MIGA1Q8NAN2 632 aa13.33□□□□□ -0.28
CLN3-224ENST00000566816 SMC1BQ8NDV3 1235 aa13.33□□□□□ -0.28
CLN3-224ENST00000566816 SH3RF3Q8TEJ3 882 aaPredicted RBP13.33□□□□□ -0.28
CLN3-224ENST00000566816 HOOK2Q96ED9 719 aa13.33□□□□□ -0.28
CLN3-224ENST00000566816 DEFB129Q9H1M3 183 aa13.33□□□□□ -0.28
CLN3-224ENST00000566816 DHX36Q9H2U1 1008 aaKnown RBP13.33□□□□□ -0.28
CLN3-224ENST00000566816 GGA3Q9NZ52 723 aa13.33□□□□□ -0.28
CLN3-224ENST00000566816 CLRN2A0PK11 232 aa13.32□□□□□ -0.28
CLN3-224ENST00000566816 CDC45O75419 566 aa13.32□□□□□ -0.28
CLN3-224ENST00000566816 MBD4O95243 580 aa13.32□□□□□ -0.28
CLN3-224ENST00000566816 ITGBL1O95965 494 aaPredicted RBP13.32□□□□□ -0.28
CLN3-224ENST00000566816 NMIQ13287 307 aaPredicted RBP13.32□□□□□ -0.28
CLN3-224ENST00000566816 RASA3Q14644 834 aa13.32□□□□□ -0.28
CLN3-224ENST00000566816 ALX1Q15699 326 aa13.32□□□□□ -0.28
CLN3-224ENST00000566816 CASC1Q6TDU7 716 aa13.32□□□□□ -0.28
CLN3-224ENST00000566816 KRT26Q7Z3Y9 468 aa13.32□□□□□ -0.28
CLN3-224ENST00000566816 LCORLQ8N3X6 602 aa13.32□□□□□ -0.28
CLN3-224ENST00000566816 FAM198AQ9UFP1 575 aa13.32□□□□□ -0.28
CLN3-224ENST00000566816 COL2A1P02458 1487 aaPredicted RBP13.31□□□□□ -0.28
CLN3-224ENST00000566816 A0A0D9SFI3 127 aa13.31□□□□□ -0.28
CLN3-224ENST00000566816 CHGBP05060 677 aa13.31□□□□□ -0.28
CLN3-224ENST00000566816 POTEIP0CG38 1075 aa13.31□□□□□ -0.28
CLN3-224ENST00000566816 POTEJP0CG39 1038 aa13.31□□□□□ -0.28
CLN3-224ENST00000566816 MAP3K10Q02779 954 aa13.31□□□□□ -0.28
CLN3-224ENST00000566816 NFIAQ12857 509 aa13.31□□□□□ -0.28
CLN3-224ENST00000566816 SUPT20HL1Q3ZLR7 823 aa13.31□□□□□ -0.28
CLN3-224ENST00000566816 SLFNL1Q499Z3 407 aa13.31□□□□□ -0.28
CLN3-224ENST00000566816 CWC27Q6UX04 472 aaKnown RBP13.31□□□□□ -0.28
CLN3-224ENST00000566816 DDRGK1Q96HY6 314 aa13.31□□□□□ -0.28
CLN3-224ENST00000566816 FAM227BQ96M60 508 aa13.31□□□□□ -0.28
CLN3-224ENST00000566816 SEC62Q99442 399 aaKnown RBP13.31□□□□□ -0.28
CLN3-224ENST00000566816 ARMT1Q9H993 441 aa13.31□□□□□ -0.28
CLN3-224ENST00000566816 VEZTQ9HBM0 779 aa13.31□□□□□ -0.28
CLN3-224ENST00000566816 ASTN2O75129 1339 aaPredicted RBP13.31□□□□□ -0.28
CLN3-224ENST00000566816 ATRNL1Q5VV63 1379 aa13.31□□□□□ -0.28
CLN3-224ENST00000566816 MAST2Q6P0Q8 1798 aa13.3□□□□□ -0.28
CLN3-224ENST00000566816 ADAMTSL1Q8N6G6 1762 aa13.3□□□□□ -0.28
CLN3-224ENST00000566816 UNCXA6NJT0 531 aa13.3□□□□□ -0.28
CLN3-224ENST00000566816 GSG1L2A8MUP6 293 aa13.3□□□□□ -0.28
CLN3-224ENST00000566816 M0R2C6 588 aa13.3□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms