RNA–Protein interactions for RNA: ENST00000566472.1

CLN3-223, Transcript of CLN3, battenin, humanhuman

TSL 4

Gene CLN3, Length 551 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-223ENST00000566472 CHRNDQ07001 517 aa7.27□□□□□ -1.25
CLN3-223ENST00000566472 SNW1Q13573 536 aaKnown RBP7.27□□□□□ -1.25
CLN3-223ENST00000566472 DHX8Q14562 1220 aaKnown RBP7.27□□□□□ -1.25
CLN3-223ENST00000566472 SART3Q15020 963 aaKnown RBP7.27□□□□□ -1.25
CLN3-223ENST00000566472 PPP2R5BQ15173 497 aa7.27□□□□□ -1.25
CLN3-223ENST00000566472 SF3A1Q15459 793 aaKnown RBP7.27□□□□□ -1.25
CLN3-223ENST00000566472 TPRNQ4KMQ1 711 aa7.27□□□□□ -1.25
CLN3-223ENST00000566472 TMEM67Q5HYA8 995 aa7.27□□□□□ -1.25
CLN3-223ENST00000566472 SLC10A5Q5PT55 438 aa7.27□□□□□ -1.25
CLN3-223ENST00000566472 AKNAD1Q5T1N1 836 aa7.27□□□□□ -1.25
CLN3-223ENST00000566472 RC3H1Q5TC82 1133 aaKnown RBP7.27□□□□□ -1.25
CLN3-223ENST00000566472 ANO1Q5XXA6 986 aa7.27□□□□□ -1.25
CLN3-223ENST00000566472 SYNE3Q6ZMZ3 975 aa7.27□□□□□ -1.25
CLN3-223ENST00000566472 ANKRD18AQ8IVF6 992 aa7.27□□□□□ -1.25
CLN3-223ENST00000566472 CEP57L1Q8IYX8 460 aa7.27□□□□□ -1.25
CLN3-223ENST00000566472 FMR1NBQ8N0W7 255 aaPredicted RBP7.27□□□□□ -1.25
CLN3-223ENST00000566472 MAGEB6Q8N7X4 407 aa7.27□□□□□ -1.25
CLN3-223ENST00000566472 IGDCC4Q8TDY8 1250 aa7.27□□□□□ -1.25
CLN3-223ENST00000566472 PRIMPOLQ96LW4 560 aa7.27□□□□□ -1.25
CLN3-223ENST00000566472 TIGD1Q96MW7 591 aa7.27□□□□□ -1.25
CLN3-223ENST00000566472 BPIFA3Q9BQP9 254 aa7.27□□□□□ -1.25
CLN3-223ENST00000566472 NOL10Q9BSC4 688 aaKnown RBP7.27□□□□□ -1.25
CLN3-223ENST00000566472 ALG1Q9BT22 464 aa7.27□□□□□ -1.25
CLN3-223ENST00000566472 NAT10Q9H0A0 1025 aaKnown RBP7.27□□□□□ -1.25
CLN3-223ENST00000566472 LY9Q9HBG7 655 aa7.27□□□□□ -1.25
CLN3-223ENST00000566472 GPHNQ9NQX3 736 aaPredicted RBP7.27□□□□□ -1.25
CLN3-223ENST00000566472 ZBTB4Q9P1Z0 1013 aaPredicted RBP7.27□□□□□ -1.25
CLN3-223ENST00000566472 ANAPC4Q9UJX5 808 aa7.27□□□□□ -1.25
CLN3-223ENST00000566472 PCDHA7Q9UN72 937 aa7.27□□□□□ -1.25
CLN3-223ENST00000566472 MORC2Q9Y6X9 1032 aaPredicted RBP7.27□□□□□ -1.25
CLN3-223ENST00000566472 NEDD4P46934 1319 aa7.27□□□□□ -1.25
CLN3-223ENST00000566472 CCDC196A0A1B0GTZ2 297 aa7.26□□□□□ -1.25
CLN3-223ENST00000566472 CCDC69A6NI79 296 aa7.26□□□□□ -1.25
CLN3-223ENST00000566472 B4E1Z4 1266 aa7.26□□□□□ -1.25
CLN3-223ENST00000566472 NEMFO60524 1076 aa7.26□□□□□ -1.25
CLN3-223ENST00000566472 FMNL1O95466 1100 aaPredicted RBP7.26□□□□□ -1.25
CLN3-223ENST00000566472 IFNAR1P17181 557 aa7.26□□□□□ -1.25
CLN3-223ENST00000566472 CMA1P23946 247 aa7.26□□□□□ -1.25
CLN3-223ENST00000566472 IARSP41252 1262 aaKnown RBP7.26□□□□□ -1.25
CLN3-223ENST00000566472 FOSBP53539 338 aa7.26□□□□□ -1.25
CLN3-223ENST00000566472 GUCY1B3Q02153 619 aa7.26□□□□□ -1.25
CLN3-223ENST00000566472 TRIM29Q14134 588 aa7.26□□□□□ -1.25
CLN3-223ENST00000566472 SLC39A14Q15043 492 aa7.26□□□□□ -1.25
CLN3-223ENST00000566472 IQCB1Q15051 598 aa7.26□□□□□ -1.25
CLN3-223ENST00000566472 VPS72Q15906 364 aa7.26□□□□□ -1.25
CLN3-223ENST00000566472 NTRK3Q16288 839 aa7.26□□□□□ -1.25
CLN3-223ENST00000566472 NFXL1Q6ZNB6 911 aa7.26□□□□□ -1.25
CLN3-223ENST00000566472 MFSD6Q6ZSS7 791 aa7.26□□□□□ -1.25
CLN3-223ENST00000566472 LUZP1Q86V48 1076 aa7.26□□□□□ -1.25
CLN3-223ENST00000566472 ELOA2Q8IYF1 753 aaPredicted RBP7.26□□□□□ -1.25
CLN3-223ENST00000566472 HELBQ8NG08 1087 aaPredicted RBP7.26□□□□□ -1.25
CLN3-223ENST00000566472 ACSBG1Q96GR2 724 aa7.26□□□□□ -1.25
CLN3-223ENST00000566472 MRFAP1L1Q96HT8 127 aa7.26□□□□□ -1.25
CLN3-223ENST00000566472 NYXQ9GZU5 481 aa7.26□□□□□ -1.25
CLN3-223ENST00000566472 DNAJC25Q9H1X3 360 aa7.26□□□□□ -1.25
CLN3-223ENST00000566472 ARMT1Q9H993 441 aa7.26□□□□□ -1.25
CLN3-223ENST00000566472 ANO8Q9HCE9 1232 aaPredicted RBP7.26□□□□□ -1.25
CLN3-223ENST00000566472 SEC31BQ9NQW1 1179 aa7.26□□□□□ -1.25
CLN3-223ENST00000566472 BSDC1Q9NW68 430 aaPredicted RBP7.26□□□□□ -1.25
CLN3-223ENST00000566472 DENND2AQ9ULE3 1009 aa7.26□□□□□ -1.25
CLN3-223ENST00000566472 SLC12A7Q9Y666 1083 aa7.26□□□□□ -1.25
CLN3-223ENST00000566472 SLC4A4Q9Y6R1 1079 aa7.26□□□□□ -1.25
CLN3-223ENST00000566472 COL24A1Q17RW2 1714 aa7.25□□□□□ -1.25
CLN3-223ENST00000566472 ERICH2A1L162 156 aa7.25□□□□□ -1.25
CLN3-223ENST00000566472 KIF28PB7ZC32 967 aa7.25□□□□□ -1.25
CLN3-223ENST00000566472 IFIT3O14879 490 aaKnown RBP7.25□□□□□ -1.25
CLN3-223ENST00000566472 ADAMTS2O95450 1211 aa7.25□□□□□ -1.25
CLN3-223ENST00000566472 U2AF2P26368 475 aaKnown RBP eCLIP7.25□□□□□ -1.25
CLN3-223ENST00000566472 TDO2P48775 406 aa7.25□□□□□ -1.25
CLN3-223ENST00000566472 RBM6P78332 1123 aaKnown RBP7.25□□□□□ -1.25
CLN3-223ENST00000566472 PLCB2Q00722 1185 aa7.25□□□□□ -1.25
CLN3-223ENST00000566472 CEBPZQ03701 1054 aaKnown RBP7.25□□□□□ -1.25
CLN3-223ENST00000566472 SSRP1Q08945 709 aaKnown RBP7.25□□□□□ -1.25
CLN3-223ENST00000566472 NOLC1Q14978 699 aaKnown RBP eCLIP7.25□□□□□ -1.25
CLN3-223ENST00000566472 WTAPQ15007 396 aa7.25□□□□□ -1.25
CLN3-223ENST00000566472 KRT40Q6A162 431 aa7.25□□□□□ -1.25
CLN3-223ENST00000566472 VPS37DQ86XT2 251 aa7.25□□□□□ -1.25
CLN3-223ENST00000566472 TRIM22Q8IYM9 498 aa7.25□□□□□ -1.25
CLN3-223ENST00000566472 LCORLQ8N3X6 602 aa7.25□□□□□ -1.25
CLN3-223ENST00000566472 KIAA1524Q8TCG1 905 aa7.25□□□□□ -1.25
CLN3-223ENST00000566472 BRIP1Q9BX63 1249 aa7.25□□□□□ -1.25
CLN3-223ENST00000566472 FTOQ9C0B1 505 aaKnown RBP eCLIP7.25□□□□□ -1.25
CLN3-223ENST00000566472 LRP2BPQ9P2M1 347 aa7.25□□□□□ -1.25
CLN3-223ENST00000566472 R3HCC1Q9Y3T6 440 aaKnown RBP7.25□□□□□ -1.25
CLN3-223ENST00000566472 CLIC4Q9Y696 253 aa7.25□□□□□ -1.25
CLN3-223ENST00000566472 A0A1B0GUL6 1792 aa7.24□□□□□ -1.25
CLN3-223ENST00000566472 MAGEB6P1A0A0J9YX57 407 aa7.24□□□□□ -1.25
CLN3-223ENST00000566472 SMTNL1A8MU46 457 aa7.24□□□□□ -1.25
CLN3-223ENST00000566472 BECN2A8MW95 431 aa7.24□□□□□ -1.25
CLN3-223ENST00000566472 DYNC1I1O14576 645 aa7.24□□□□□ -1.25
CLN3-223ENST00000566472 MYO1BO43795 1136 aa7.24□□□□□ -1.25
CLN3-223ENST00000566472 RRP9O43818 475 aaKnown RBP7.24□□□□□ -1.25
CLN3-223ENST00000566472 TOM1O60784 492 aa7.24□□□□□ -1.25
CLN3-223ENST00000566472 CUTAO60888 179 aa7.24□□□□□ -1.25
CLN3-223ENST00000566472 RPS6KA4O75676 772 aa7.24□□□□□ -1.25
CLN3-223ENST00000566472 DEXIO95424 95 aa7.24□□□□□ -1.25
CLN3-223ENST00000566472 CYP7A1P22680 504 aa7.24□□□□□ -1.25
CLN3-223ENST00000566472 CDC27P30260 824 aa7.24□□□□□ -1.25
CLN3-223ENST00000566472 BCAMP50895 628 aa7.24□□□□□ -1.25
CLN3-223ENST00000566472 TPM4P67936 248 aa7.24□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 52.6 ms