RNA–Protein interactions for RNA: ENST00000562754.1

VPS4A-202, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 2

Gene VPS4A, Length 633 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-202ENST00000562754 ZBED3Q96IU2 234 aaPredicted RBP19.95■□□□□ 0.78
VPS4A-202ENST00000562754 EGFRP00533 1210 aa19.94■□□□□ 0.78
VPS4A-202ENST00000562754 EPS15P42566 896 aa19.94■□□□□ 0.78
VPS4A-202ENST00000562754 PPP4CP60510 307 aa19.94■□□□□ 0.78
VPS4A-202ENST00000562754 DPY19L2Q6NUT2 758 aa19.94■□□□□ 0.78
VPS4A-202ENST00000562754 MTMR14Q8NCE2 650 aa19.94■□□□□ 0.78
VPS4A-202ENST00000562754 AIDAQ96BJ3 306 aa19.94■□□□□ 0.78
VPS4A-202ENST00000562754 STRBPQ96SI9 672 aaKnown RBP19.94■□□□□ 0.78
VPS4A-202ENST00000562754 MYOZ2Q9NPC6 264 aa19.94■□□□□ 0.78
VPS4A-202ENST00000562754 SCN4AP35499 1836 aa19.94■□□□□ 0.78
VPS4A-202ENST00000562754 SPDYE2BA6NHP3 402 aa19.93■□□□□ 0.78
VPS4A-202ENST00000562754 FOXP2O15409 715 aa19.93■□□□□ 0.78
VPS4A-202ENST00000562754 SPDYE6P0CI01 402 aa19.93■□□□□ 0.78
VPS4A-202ENST00000562754 MMP14P50281 582 aa19.93■□□□□ 0.78
VPS4A-202ENST00000562754 RBM5P52756 815 aaKnown RBP eCLIP19.93■□□□□ 0.78
VPS4A-202ENST00000562754 RHBDL3P58872 404 aa19.93■□□□□ 0.78
VPS4A-202ENST00000562754 SH3RF3Q8TEJ3 882 aaPredicted RBP19.93■□□□□ 0.78
VPS4A-202ENST00000562754 PRMT6Q96LA8 375 aaPredicted RBP19.93■□□□□ 0.78
VPS4A-202ENST00000562754 DDX60LQ5H9U9 1706 aaKnown RBP19.93■□□□□ 0.78
VPS4A-202ENST00000562754 NAV1Q8NEY1 1877 aa19.92■□□□□ 0.78
VPS4A-202ENST00000562754 SEC24BO95487 1268 aa19.92■□□□□ 0.78
VPS4A-202ENST00000562754 DLGAP5Q15398 846 aa19.92■□□□□ 0.78
VPS4A-202ENST00000562754 VPS53Q5VIR6 699 aa19.92■□□□□ 0.78
VPS4A-202ENST00000562754 CDC42EP5Q6NZY7 148 aa19.92■□□□□ 0.78
VPS4A-202ENST00000562754 SAMD7Q7Z3H4 446 aa19.92■□□□□ 0.78
VPS4A-202ENST00000562754 TRPM4Q8TD43 1214 aa19.92■□□□□ 0.78
VPS4A-202ENST00000562754 NOL10Q9BSC4 688 aaKnown RBP19.92■□□□□ 0.78
VPS4A-202ENST00000562754 H7C1D1 291 aa19.91■□□□□ 0.78
VPS4A-202ENST00000562754 PRKAB2O43741 272 aa19.91■□□□□ 0.78
VPS4A-202ENST00000562754 BAG3O95817 575 aa19.91■□□□□ 0.78
VPS4A-202ENST00000562754 LMOD1P29536 600 aaPredicted RBP19.91■□□□□ 0.78
VPS4A-202ENST00000562754 KIF4BQ2VIQ3 1234 aa19.91■□□□□ 0.78
VPS4A-202ENST00000562754 TBC1D10BQ4KMP7 808 aaPredicted RBP19.91■□□□□ 0.78
VPS4A-202ENST00000562754 BAZ2AQ9UIF9 1905 aaKnown RBP19.9■□□□□ 0.78
VPS4A-202ENST00000562754 WNT10BO00744 389 aa19.9■□□□□ 0.78
VPS4A-202ENST00000562754 RBM26Q5T8P6 1007 aaKnown RBP19.9■□□□□ 0.78
VPS4A-202ENST00000562754 BACH2Q9BYV9 841 aa19.9■□□□□ 0.78
VPS4A-202ENST00000562754 LSG1Q9H089 658 aaKnown RBP19.9■□□□□ 0.78
VPS4A-202ENST00000562754 POTECB2RU33 542 aa19.89■□□□□ 0.77
VPS4A-202ENST00000562754 PLCG2P16885 1265 aa19.89■□□□□ 0.77
VPS4A-202ENST00000562754 MFAP1P55081 439 aaKnown RBP19.89■□□□□ 0.77
VPS4A-202ENST00000562754 PTH1RQ03431 593 aa19.89■□□□□ 0.77
VPS4A-202ENST00000562754 NBPF9Q3BBW0 867 aa19.89■□□□□ 0.77
VPS4A-202ENST00000562754 CERS3Q8IU89 383 aa19.89■□□□□ 0.77
VPS4A-202ENST00000562754 TEX11Q8IYF3 940 aa19.89■□□□□ 0.77
VPS4A-202ENST00000562754 SDR42E1Q8WUS8 393 aa19.89■□□□□ 0.77
VPS4A-202ENST00000562754 CRNKL1Q9BZJ0 848 aaKnown RBP19.89■□□□□ 0.77
VPS4A-202ENST00000562754 TDRD3Q9H7E2 651 aaKnown RBP19.89■□□□□ 0.77
VPS4A-202ENST00000562754 EPB41L4AQ9HCS5 686 aaPredicted RBP19.89■□□□□ 0.77
VPS4A-202ENST00000562754 ANO2Q9NQ90 1003 aa19.89■□□□□ 0.77
VPS4A-202ENST00000562754 USP40Q9NVE5 1235 aa19.89■□□□□ 0.77
VPS4A-202ENST00000562754 ASTN2O75129 1339 aaPredicted RBP19.88■□□□□ 0.77
VPS4A-202ENST00000562754 GSG1L2A8MUP6 293 aa19.88■□□□□ 0.77
VPS4A-202ENST00000562754 WDHD1O75717 1129 aaPredicted RBP19.88■□□□□ 0.77
VPS4A-202ENST00000562754 HSPD1P10809 573 aaKnown RBP19.88■□□□□ 0.77
VPS4A-202ENST00000562754 CACNB3P54284 484 aa19.88■□□□□ 0.77
VPS4A-202ENST00000562754 SPDYE2Q495Y8 402 aa19.88■□□□□ 0.77
VPS4A-202ENST00000562754 ADARB2Q9NS39 739 aaKnown RBP19.88■□□□□ 0.77
VPS4A-202ENST00000562754 HACL1Q9UJ83 578 aa19.88■□□□□ 0.77
VPS4A-202ENST00000562754 SLC4A4Q9Y6R1 1079 aa19.88■□□□□ 0.77
VPS4A-202ENST00000562754 LAMA4Q16363 1823 aa19.88■□□□□ 0.77
VPS4A-202ENST00000562754 LAMB1P07942 1786 aa19.88■□□□□ 0.77
VPS4A-202ENST00000562754 MYH1P12882 1939 aa19.87■□□□□ 0.77
VPS4A-202ENST00000562754 CLRN2A0PK11 232 aa19.87■□□□□ 0.77
VPS4A-202ENST00000562754 GNAT2P19087 354 aa19.87■□□□□ 0.77
VPS4A-202ENST00000562754 HIRAP54198 1017 aaPredicted RBP19.87■□□□□ 0.77
VPS4A-202ENST00000562754 DSCC1Q9BVC3 393 aa19.87■□□□□ 0.77
VPS4A-202ENST00000562754 DDX4Q9NQI0 724 aaKnown RBP19.87■□□□□ 0.77
VPS4A-202ENST00000562754 ZNF70Q9UC06 446 aaPredicted RBP19.87■□□□□ 0.77
VPS4A-202ENST00000562754 REC8O95072 547 aa19.86■□□□□ 0.77
VPS4A-202ENST00000562754 EPHX2P34913 555 aa19.86■□□□□ 0.77
VPS4A-202ENST00000562754 NFIAQ12857 509 aa19.86■□□□□ 0.77
VPS4A-202ENST00000562754 KIAA1211Q6ZU35 1233 aa19.86■□□□□ 0.77
VPS4A-202ENST00000562754 TGFBRAP1Q8WUH2 860 aa19.86■□□□□ 0.77
VPS4A-202ENST00000562754 MKRN1Q9UHC7 482 aaKnown RBP19.86■□□□□ 0.77
VPS4A-202ENST00000562754 RPAP1Q9BWH6 1393 aaPredicted RBP19.85■□□□□ 0.77
VPS4A-202ENST00000562754 FLT1P17948 1338 aa19.85■□□□□ 0.77
VPS4A-202ENST00000562754 PATL2C9JE40 543 aaKnown RBP19.85■□□□□ 0.77
VPS4A-202ENST00000562754 MAPKAPK5Q8IW41 473 aa19.85■□□□□ 0.77
VPS4A-202ENST00000562754 TAF1DQ9H5J8 278 aaPredicted RBP19.85■□□□□ 0.77
VPS4A-202ENST00000562754 DCP1AQ9NPI6 582 aaPredicted RBP19.85■□□□□ 0.77
VPS4A-202ENST00000562754 FAM198AQ9UFP1 575 aa19.85■□□□□ 0.77
VPS4A-202ENST00000562754 IQCA1LA6NCM1 817 aa19.84■□□□□ 0.77
VPS4A-202ENST00000562754 USP5P45974 858 aa19.84■□□□□ 0.77
VPS4A-202ENST00000562754 PICALMQ13492 652 aa19.84■□□□□ 0.77
VPS4A-202ENST00000562754 IFNL3Q8IZI9 196 aa19.84■□□□□ 0.77
VPS4A-202ENST00000562754 MAP4K1Q92918 833 aa19.84■□□□□ 0.77
VPS4A-202ENST00000562754 IDI2Q9BXS1 227 aa19.84■□□□□ 0.77
VPS4A-202ENST00000562754 SIPA1L1O43166 1804 aa19.83■□□□□ 0.77
VPS4A-202ENST00000562754 ZMYM6O95789 1325 aa19.83■□□□□ 0.77
VPS4A-202ENST00000562754 MYO1BO43795 1136 aa19.83■□□□□ 0.77
VPS4A-202ENST00000562754 APPP05067 770 aa19.83■□□□□ 0.77
VPS4A-202ENST00000562754 ALX1Q15699 326 aa19.83■□□□□ 0.77
VPS4A-202ENST00000562754 USP26Q9BXU7 913 aa19.83■□□□□ 0.77
VPS4A-202ENST00000562754 VEZTQ9HBM0 779 aa19.83■□□□□ 0.77
VPS4A-202ENST00000562754 ATP8A2Q9NTI2 1148 aa19.83■□□□□ 0.77
VPS4A-202ENST00000562754 TMOD2Q9NZR1 351 aa19.83■□□□□ 0.77
VPS4A-202ENST00000562754 RBM8AQ9Y5S9 174 aaKnown RBP19.83■□□□□ 0.77
VPS4A-202ENST00000562754 CNTNAP1P78357 1384 aa19.83■□□□□ 0.76
VPS4A-202ENST00000562754 FGAP02671 866 aa19.82■□□□□ 0.76
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms