RNA–Protein interactions for RNA: ENST00000562626.1

CLK3-208, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 812 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-208ENST00000562626 MROH7-TTC4A0A0A0MT08 1334 aa11.91□□□□□ -0.5
CLK3-208ENST00000562626 TCRBV5S4A2TA0A5A2 114 aa11.91□□□□□ -0.5
CLK3-208ENST00000562626 TOMM70O94826 608 aa11.91□□□□□ -0.5
CLK3-208ENST00000562626 HDLBPQ00341 1268 aaKnown RBP11.91□□□□□ -0.5
CLK3-208ENST00000562626 CHADLQ6NUI6 762 aa11.91□□□□□ -0.5
CLK3-208ENST00000562626 HHIPL2Q6UWX4 724 aa11.91□□□□□ -0.5
CLK3-208ENST00000562626 ZGPATQ8N5A5 531 aaKnown RBP11.91□□□□□ -0.5
CLK3-208ENST00000562626 MAGEB6Q8N7X4 407 aa11.91□□□□□ -0.5
CLK3-208ENST00000562626 OSBPL3Q9H4L5 887 aa11.91□□□□□ -0.5
CLK3-208ENST00000562626 CNTNAP1P78357 1384 aa11.91□□□□□ -0.5
CLK3-208ENST00000562626 LAMA4Q16363 1823 aa11.9□□□□□ -0.5
CLK3-208ENST00000562626 PHIPQ8WWQ0 1821 aa11.9□□□□□ -0.5
CLK3-208ENST00000562626 MAST3O60307 1309 aa11.9□□□□□ -0.5
CLK3-208ENST00000562626 GLRX3O76003 335 aaKnown RBP11.9□□□□□ -0.5
CLK3-208ENST00000562626 GSPT1P15170 499 aaKnown RBP11.9□□□□□ -0.5
CLK3-208ENST00000562626 PDE6AP16499 860 aa11.9□□□□□ -0.5
CLK3-208ENST00000562626 BTDP43251 543 aa11.9□□□□□ -0.5
CLK3-208ENST00000562626 DYNLL1P63167 89 aaKnown RBP11.9□□□□□ -0.5
CLK3-208ENST00000562626 SPDYE2Q495Y8 402 aa11.9□□□□□ -0.5
CLK3-208ENST00000562626 PRAMEF18Q5VWM3 479 aa11.9□□□□□ -0.5
CLK3-208ENST00000562626 ERICH6BQ5W0A0 696 aa11.9□□□□□ -0.5
CLK3-208ENST00000562626 SPTY2D1Q68D10 685 aaPredicted RBP11.9□□□□□ -0.5
CLK3-208ENST00000562626 NAA16Q6N069 864 aaPredicted RBP11.9□□□□□ -0.5
CLK3-208ENST00000562626 CDC42EP5Q6NZY7 148 aa11.9□□□□□ -0.5
CLK3-208ENST00000562626 USP48Q86UV5 1035 aa11.9□□□□□ -0.5
CLK3-208ENST00000562626 RBM46Q8TBY0 533 aaKnown RBP11.9□□□□□ -0.5
CLK3-208ENST00000562626 GPATCH3Q96I76 525 aa11.9□□□□□ -0.5
CLK3-208ENST00000562626 MRIQ9BWK5 157 aa11.9□□□□□ -0.5
CLK3-208ENST00000562626 ZNF70Q9UC06 446 aaPredicted RBP11.9□□□□□ -0.5
CLK3-208ENST00000562626 ZBTB47Q9UFB7 747 aaPredicted RBP11.9□□□□□ -0.5
CLK3-208ENST00000562626 ZNF532Q9HCE3 1301 aa11.89□□□□□ -0.51
CLK3-208ENST00000562626 GPR75-ASB3A0A0A6YYF3 556 aa11.89□□□□□ -0.51
CLK3-208ENST00000562626 CYP7A1P22680 504 aa11.89□□□□□ -0.51
CLK3-208ENST00000562626 ADD2P35612 726 aa11.89□□□□□ -0.51
CLK3-208ENST00000562626 RHBDL3P58872 404 aa11.89□□□□□ -0.51
CLK3-208ENST00000562626 NFIAQ12857 509 aa11.89□□□□□ -0.51
CLK3-208ENST00000562626 ZFPM1Q8IX07 1006 aa11.89□□□□□ -0.51
CLK3-208ENST00000562626 CNTROBQ8N137 903 aa11.89□□□□□ -0.51
CLK3-208ENST00000562626 KBTBD3Q8NAB2 608 aa11.89□□□□□ -0.51
CLK3-208ENST00000562626 MIGA1Q8NAN2 632 aa11.89□□□□□ -0.51
CLK3-208ENST00000562626 FAM163AQ96GL9 167 aaPredicted RBP11.89□□□□□ -0.51
CLK3-208ENST00000562626 PTPRFP10586 1907 aa11.89□□□□□ -0.51
CLK3-208ENST00000562626 DOCK1Q14185 1865 aa11.89□□□□□ -0.51
CLK3-208ENST00000562626 PASKQ96RG2 1323 aa11.88□□□□□ -0.51
CLK3-208ENST00000562626 ERC2O15083 957 aa11.88□□□□□ -0.51
CLK3-208ENST00000562626 WDHD1O75717 1129 aaPredicted RBP11.88□□□□□ -0.51
CLK3-208ENST00000562626 TTF1Q15361 905 aaPredicted RBP11.88□□□□□ -0.51
CLK3-208ENST00000562626 TTC22Q5TAA0 569 aa11.88□□□□□ -0.51
CLK3-208ENST00000562626 SLC9C2Q5TAH2 1124 aa11.88□□□□□ -0.51
CLK3-208ENST00000562626 SH3RF3Q8TEJ3 882 aaPredicted RBP11.88□□□□□ -0.51
CLK3-208ENST00000562626 ZC3H15Q8WU90 426 aaKnown RBP11.88□□□□□ -0.51
CLK3-208ENST00000562626 SEC62Q99442 399 aaKnown RBP11.88□□□□□ -0.51
CLK3-208ENST00000562626 VEZTQ9HBM0 779 aa11.88□□□□□ -0.51
CLK3-208ENST00000562626 DDX4Q9NQI0 724 aaKnown RBP11.88□□□□□ -0.51
CLK3-208ENST00000562626 AATFQ9NY61 560 aaKnown RBP eCLIP11.88□□□□□ -0.51
CLK3-208ENST00000562626 FAM198AQ9UFP1 575 aa11.88□□□□□ -0.51
CLK3-208ENST00000562626 PITPNM2Q9BZ72 1349 aa11.87□□□□□ -0.51
CLK3-208ENST00000562626 TCP10L2B9ZVM9 353 aa11.87□□□□□ -0.51
CLK3-208ENST00000562626 SLURP2P0DP57 97 aa11.87□□□□□ -0.51
CLK3-208ENST00000562626 RGS3P49796 1198 aa11.87□□□□□ -0.51
CLK3-208ENST00000562626 MMP14P50281 582 aa11.87□□□□□ -0.51
CLK3-208ENST00000562626 HTRA3P83110 453 aa11.87□□□□□ -0.51
CLK3-208ENST00000562626 MAP3K12Q12852 859 aa11.87□□□□□ -0.51
CLK3-208ENST00000562626 KRT26Q7Z3Y9 468 aa11.87□□□□□ -0.51
CLK3-208ENST00000562626 SMC1BQ8NDV3 1235 aa11.87□□□□□ -0.51
CLK3-208ENST00000562626 RIOK1Q9BRS2 568 aaKnown RBP11.87□□□□□ -0.51
CLK3-208ENST00000562626 USP40Q9NVE5 1235 aa11.87□□□□□ -0.51
CLK3-208ENST00000562626 FZD1Q9UP38 647 aa11.87□□□□□ -0.51
CLK3-208ENST00000562626 M0R2C6 588 aa11.86□□□□□ -0.51
CLK3-208ENST00000562626 PPP4CP60510 307 aa11.86□□□□□ -0.51
CLK3-208ENST00000562626 GSTO1P78417 241 aa11.86□□□□□ -0.51
CLK3-208ENST00000562626 EVX2Q03828 476 aa11.86□□□□□ -0.51
CLK3-208ENST00000562626 SH3BP5LQ7L8J4 393 aa11.86□□□□□ -0.51
CLK3-208ENST00000562626 LCORLQ8N3X6 602 aa11.86□□□□□ -0.51
CLK3-208ENST00000562626 DCPSQ96C86 337 aaKnown RBP11.86□□□□□ -0.51
CLK3-208ENST00000562626 CDCA5Q96FF9 252 aa11.86□□□□□ -0.51
CLK3-208ENST00000562626 TEPSINQ96N21 525 aa11.86□□□□□ -0.51
CLK3-208ENST00000562626 TMEM39BQ9GZU3 492 aa11.86□□□□□ -0.51
CLK3-208ENST00000562626 PUS7LQ9H0K6 701 aaKnown RBP11.86□□□□□ -0.51
CLK3-208ENST00000562626 TRIM6-TRIM34B2RNG4 842 aa11.85□□□□□ -0.51
CLK3-208ENST00000562626 PRKAB2O43741 272 aa11.85□□□□□ -0.51
CLK3-208ENST00000562626 LDHCP07864 332 aa11.85□□□□□ -0.51
CLK3-208ENST00000562626 HSPA1AP0DMV8 641 aaKnown RBP11.85□□□□□ -0.51
CLK3-208ENST00000562626 HSPA1BP0DMV9 641 aaKnown RBP11.85□□□□□ -0.51
CLK3-208ENST00000562626 SDSP20132 328 aa11.85□□□□□ -0.51
CLK3-208ENST00000562626 TCP10Q12799 353 aa11.85□□□□□ -0.51
CLK3-208ENST00000562626 RASA3Q14644 834 aa11.85□□□□□ -0.51
CLK3-208ENST00000562626 CST9Q5W186 159 aa11.85□□□□□ -0.51
CLK3-208ENST00000562626 CDC37L1Q7L3B6 337 aa11.85□□□□□ -0.51
CLK3-208ENST00000562626 OSBP2Q969R2 916 aa11.85□□□□□ -0.51
CLK3-208ENST00000562626 FSD1Q9BTV5 496 aa11.85□□□□□ -0.51
CLK3-208ENST00000562626 IL25Q9H293 177 aa11.85□□□□□ -0.51
CLK3-208ENST00000562626 ARMT1Q9H993 441 aa11.85□□□□□ -0.51
CLK3-208ENST00000562626 ATRNL1Q5VV63 1379 aa11.84□□□□□ -0.51
CLK3-208ENST00000562626 A0A0D9SFI3 127 aa11.84□□□□□ -0.51
CLK3-208ENST00000562626 SMIM22K7EJ46 135 aa11.84□□□□□ -0.51
CLK3-208ENST00000562626 RNF113AO15541 343 aaKnown RBP11.84□□□□□ -0.51
CLK3-208ENST00000562626 MBD4O95243 580 aa11.84□□□□□ -0.51
CLK3-208ENST00000562626 FSTL1Q12841 308 aa11.84□□□□□ -0.51
CLK3-208ENST00000562626 PICALMQ13492 652 aa11.84□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 56.8 ms