RNA–Protein interactions for RNA: ENST00000561976.5

VPS9D1-202, Transcript of VPS9 domain containing 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS9D1, Length 2,791 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-202ENST00000561976 SCARF1Q14162 830 aa16.08■□□□□ 0.16
VPS9D1-202ENST00000561976 TAF7LQ5H9L4 462 aa16.08■□□□□ 0.16
VPS9D1-202ENST00000561976 CCDC191Q8NCU4 936 aa16.08■□□□□ 0.16
VPS9D1-202ENST00000561976 PHKBQ93100 1093 aa16.08■□□□□ 0.16
VPS9D1-202ENST00000561976 HPSEQ9Y251 543 aa16.08■□□□□ 0.16
VPS9D1-202ENST00000561976 CDKL5O76039 1030 aa16.08■□□□□ 0.16
VPS9D1-202ENST00000561976 A1BGP04217 495 aa16.08■□□□□ 0.16
VPS9D1-202ENST00000561976 TRIM29Q14134 588 aa16.08■□□□□ 0.16
VPS9D1-202ENST00000561976 CCDC102BQ68D86 513 aa16.08■□□□□ 0.16
VPS9D1-202ENST00000561976 TMX1Q9H3N1 280 aa16.08■□□□□ 0.16
VPS9D1-202ENST00000561976 POLR3GO15318 223 aaPredicted RBP16.07■□□□□ 0.16
VPS9D1-202ENST00000561976 TADA3O75528 432 aa16.07■□□□□ 0.16
VPS9D1-202ENST00000561976 APPP05067 770 aa16.07■□□□□ 0.16
VPS9D1-202ENST00000561976 PI16Q6UXB8 463 aa16.07■□□□□ 0.16
VPS9D1-202ENST00000561976 CREBRFQ8IUR6 639 aa16.07■□□□□ 0.16
VPS9D1-202ENST00000561976 ANGEL1Q9UNK9 670 aaKnown RBP16.07■□□□□ 0.16
VPS9D1-202ENST00000561976 PPP2R2CQ9Y2T4 447 aa16.07■□□□□ 0.16
VPS9D1-202ENST00000561976 ZMYM6O95789 1325 aa16.07■□□□□ 0.16
VPS9D1-202ENST00000561976 EFCAB8A8MWE9 144 aa16.07■□□□□ 0.16
VPS9D1-202ENST00000561976 ARHGAP6O43182 974 aa16.07■□□□□ 0.16
VPS9D1-202ENST00000561976 SEC31AO94979 1220 aaKnown RBP16.07■□□□□ 0.16
VPS9D1-202ENST00000561976 TPM1P09493 284 aa16.07■□□□□ 0.16
VPS9D1-202ENST00000561976 LONRF3Q496Y0 759 aa16.07■□□□□ 0.16
VPS9D1-202ENST00000561976 MICU3Q86XE3 530 aa16.07■□□□□ 0.16
VPS9D1-202ENST00000561976 ATG3Q9NT62 314 aa16.07■□□□□ 0.16
VPS9D1-202ENST00000561976 DENND2AQ9ULE3 1009 aa16.07■□□□□ 0.16
VPS9D1-202ENST00000561976 PCDHA5Q9Y5H7 936 aa16.07■□□□□ 0.16
VPS9D1-202ENST00000561976 CDK11BP21127 795 aaKnown RBP16.06■□□□□ 0.16
VPS9D1-202ENST00000561976 CASQ1P31415 396 aa16.06■□□□□ 0.16
VPS9D1-202ENST00000561976 GNG11P61952 73 aa16.06■□□□□ 0.16
VPS9D1-202ENST00000561976 METTL16Q86W50 562 aaKnown RBP16.06■□□□□ 0.16
VPS9D1-202ENST00000561976 FCHSD1Q86WN1 690 aa16.06■□□□□ 0.16
VPS9D1-202ENST00000561976 CALCOCO1Q9P1Z2 691 aa16.06■□□□□ 0.16
VPS9D1-202ENST00000561976 KCNH3Q9ULD8 1083 aa16.06■□□□□ 0.16
VPS9D1-202ENST00000561976 PARP3Q9Y6F1 533 aa16.06■□□□□ 0.16
VPS9D1-202ENST00000561976 FANCGO15287 622 aa16.06■□□□□ 0.16
VPS9D1-202ENST00000561976 ZRANB2O95218 330 aaKnown RBP eCLIP16.06■□□□□ 0.16
VPS9D1-202ENST00000561976 PTPAQ15257 358 aa16.06■□□□□ 0.16
VPS9D1-202ENST00000561976 CHRNA2Q15822 529 aa16.06■□□□□ 0.16
VPS9D1-202ENST00000561976 TEX35Q5T0J7 233 aa16.06■□□□□ 0.16
VPS9D1-202ENST00000561976 RESP18Q5W5W9 173 aa16.06■□□□□ 0.16
VPS9D1-202ENST00000561976 NFXL1Q6ZNB6 911 aa16.06■□□□□ 0.16
VPS9D1-202ENST00000561976 BAG1Q99933 345 aaPredicted RBP16.06■□□□□ 0.16
VPS9D1-202ENST00000561976 VWA3AA6NCI4 1184 aa16.05■□□□□ 0.16
VPS9D1-202ENST00000561976 KRBA2Q6ZNG9 492 aa16.05■□□□□ 0.16
VPS9D1-202ENST00000561976 EPC1Q9H2F5 836 aa16.05■□□□□ 0.16
VPS9D1-202ENST00000561976 ZNF330Q9Y3S2 320 aaPredicted RBP16.05■□□□□ 0.16
VPS9D1-202ENST00000561976 CPDO75976 1380 aa16.05■□□□□ 0.16
VPS9D1-202ENST00000561976 NWD2Q9ULI1 1742 aa16.05■□□□□ 0.16
VPS9D1-202ENST00000561976 CUTAO60888 179 aa16.05■□□□□ 0.16
VPS9D1-202ENST00000561976 SPECC1Q5M775 1068 aa16.05■□□□□ 0.16
VPS9D1-202ENST00000561976 CYB5R4Q7L1T6 521 aa16.05■□□□□ 0.16
VPS9D1-202ENST00000561976 MPHOSPH8Q99549 860 aa16.05■□□□□ 0.16
VPS9D1-202ENST00000561976 DDX24Q9GZR7 859 aaKnown RBP eCLIP16.05■□□□□ 0.16
VPS9D1-202ENST00000561976 C19orf44Q9H6X5 657 aa16.05■□□□□ 0.16
VPS9D1-202ENST00000561976 WDR19Q8NEZ3 1342 aa16.04■□□□□ 0.16
VPS9D1-202ENST00000561976 CDC27P30260 824 aa16.04■□□□□ 0.16
VPS9D1-202ENST00000561976 CYP2C19P33261 490 aa16.04■□□□□ 0.16
VPS9D1-202ENST00000561976 IARSP41252 1262 aaKnown RBP16.04■□□□□ 0.16
VPS9D1-202ENST00000561976 FOXP4Q8IVH2 680 aaPredicted RBP16.04■□□□□ 0.16
VPS9D1-202ENST00000561976 SPEF2Q9C093 1822 aa16.04■□□□□ 0.16
VPS9D1-202ENST00000561976 MYO1BO43795 1136 aa16.04■□□□□ 0.16
VPS9D1-202ENST00000561976 PDE4BQ07343 736 aa16.04■□□□□ 0.16
VPS9D1-202ENST00000561976 MAP3K14Q99558 947 aa16.04■□□□□ 0.16
VPS9D1-202ENST00000561976 HOOK1Q9UJC3 728 aaKnown RBP16.04■□□□□ 0.16
VPS9D1-202ENST00000561976 FOXN1O15353 648 aa16.04■□□□□ 0.16
VPS9D1-202ENST00000561976 APOA5Q6Q788 366 aa16.04■□□□□ 0.16
VPS9D1-202ENST00000561976 TBC1D10CQ8IV04 446 aa16.04■□□□□ 0.16
VPS9D1-202ENST00000561976 CABLES1Q8TDN4 633 aa16.04■□□□□ 0.16
VPS9D1-202ENST00000561976 GOLGA6L9A6NEM1 432 aa16.03■□□□□ 0.16
VPS9D1-202ENST00000561976 B4E1Z4 1266 aa16.03■□□□□ 0.16
VPS9D1-202ENST00000561976 SH2B2O14492 632 aaPredicted RBP16.03■□□□□ 0.16
VPS9D1-202ENST00000561976 ZBTB43O43298 467 aa16.03■□□□□ 0.16
VPS9D1-202ENST00000561976 ADKP55263 362 aaKnown RBP16.03■□□□□ 0.16
VPS9D1-202ENST00000561976 TMEM139Q8IV31 216 aa16.03■□□□□ 0.16
VPS9D1-202ENST00000561976 WDR24Q96S15 920 aa16.03■□□□□ 0.16
VPS9D1-202ENST00000561976 MYL10Q9BUA6 226 aa16.03■□□□□ 0.16
VPS9D1-202ENST00000561976 SENP2Q9HC62 589 aa16.03■□□□□ 0.16
VPS9D1-202ENST00000561976 INTS13Q9NVM9 706 aa16.03■□□□□ 0.16
VPS9D1-202ENST00000561976 KIF1AQ12756 1690 aa16.03■□□□□ 0.16
VPS9D1-202ENST00000561976 TMEM94Q12767 1356 aa16.03■□□□□ 0.16
VPS9D1-202ENST00000561976 GOLGA8AA7E2F4 631 aa16.03■□□□□ 0.16
VPS9D1-202ENST00000561976 ZBTB22O15209 634 aa16.03■□□□□ 0.16
VPS9D1-202ENST00000561976 PPP2R3AQ06190 1150 aa16.03■□□□□ 0.16
VPS9D1-202ENST00000561976 SLC9C2Q5TAH2 1124 aa16.03■□□□□ 0.16
VPS9D1-202ENST00000561976 GNL3Q9BVP2 549 aaKnown RBP eCLIP16.03■□□□□ 0.16
VPS9D1-202ENST00000561976 NBPF3Q9H094 633 aa16.03■□□□□ 0.16
VPS9D1-202ENST00000561976 KRI1Q8N9T8 703 aaKnown RBP16.02■□□□□ 0.16
VPS9D1-202ENST00000561976 NKX2-3Q8TAU0 364 aa16.02■□□□□ 0.16
VPS9D1-202ENST00000561976 NFE2L3Q9Y4A8 694 aa16.02■□□□□ 0.16
VPS9D1-202ENST00000561976 FAM237AA0A1B0GTK4 181 aa16.02■□□□□ 0.15
VPS9D1-202ENST00000561976 BMP6P22004 513 aa16.02■□□□□ 0.15
VPS9D1-202ENST00000561976 TOGARAM2Q6ZUX3 1019 aa16.02■□□□□ 0.15
VPS9D1-202ENST00000561976 SLC26A6Q9BXS9 759 aa16.02■□□□□ 0.15
VPS9D1-202ENST00000561976 EIF4ENIF1Q9NRA8 985 aaKnown RBP16.02■□□□□ 0.15
VPS9D1-202ENST00000561976 STX10O60499 249 aa16.01■□□□□ 0.15
VPS9D1-202ENST00000561976 IDH1O75874 414 aaKnown RBP16.01■□□□□ 0.15
VPS9D1-202ENST00000561976 SPECC1LQ69YQ0 1117 aa16.01■□□□□ 0.15
VPS9D1-202ENST00000561976 PROSER2Q86WR7 435 aaPredicted RBP16.01■□□□□ 0.15
VPS9D1-202ENST00000561976 GPR161Q8N6U8 529 aaKnown RBP16.01■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms