RNA–Protein interactions for RNA: ENST00000558172.5

LRRC28-204, Transcript of leucine rich repeat containing 28, humanhuman

TSL 5

Gene LRRC28, Length 644 nt, Biotype protein coding, Subcellular localisation Cytosol, Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC28-204ENST00000558172 APOBEC3HQ6NTF7 200 aaKnown RBP12.65□□□□□ -0.38
LRRC28-204ENST00000558172 LDHDQ86WU2 507 aa12.65□□□□□ -0.38
LRRC28-204ENST00000558172 CLEC11AQ9Y240 323 aa12.65□□□□□ -0.38
LRRC28-204ENST00000558172 FOCADQ5VW36 1801 aa12.65□□□□□ -0.39
LRRC28-204ENST00000558172 PITPNM2Q9BZ72 1349 aa12.64□□□□□ -0.39
LRRC28-204ENST00000558172 ZNF532Q9HCE3 1301 aa12.64□□□□□ -0.39
LRRC28-204ENST00000558172 TCRBV5S4A2TA0A5A2 114 aa12.64□□□□□ -0.39
LRRC28-204ENST00000558172 HIP1O00291 1037 aa12.64□□□□□ -0.39
LRRC28-204ENST00000558172 PLCG2P16885 1265 aa12.64□□□□□ -0.39
LRRC28-204ENST00000558172 BTDP43251 543 aa12.64□□□□□ -0.39
LRRC28-204ENST00000558172 DCPSQ96C86 337 aaKnown RBP12.64□□□□□ -0.39
LRRC28-204ENST00000558172 TMOD2Q9NZR1 351 aa12.64□□□□□ -0.39
LRRC28-204ENST00000558172 TOMM70O94826 608 aa12.63□□□□□ -0.39
LRRC28-204ENST00000558172 GSPT1P15170 499 aaKnown RBP12.63□□□□□ -0.39
LRRC28-204ENST00000558172 SDSP20132 328 aa12.63□□□□□ -0.39
LRRC28-204ENST00000558172 SPDYE2Q495Y8 402 aa12.63□□□□□ -0.39
LRRC28-204ENST00000558172 BMP2KLQ5H9B9 411 aa12.63□□□□□ -0.39
LRRC28-204ENST00000558172 FKBP1CQ5VVH2 108 aa12.63□□□□□ -0.39
LRRC28-204ENST00000558172 APOBEC3FQ8IUX4 373 aaKnown RBP12.63□□□□□ -0.39
LRRC28-204ENST00000558172 APPBP2Q92624 585 aa12.63□□□□□ -0.39
LRRC28-204ENST00000558172 TDRD3Q9H7E2 651 aaKnown RBP12.63□□□□□ -0.39
LRRC28-204ENST00000558172 USP40Q9NVE5 1235 aa12.63□□□□□ -0.39
LRRC28-204ENST00000558172 ZNF70Q9UC06 446 aaPredicted RBP12.63□□□□□ -0.39
LRRC28-204ENST00000558172 PCDHAC2Q9Y5I4 1007 aa12.63□□□□□ -0.39
LRRC28-204ENST00000558172 MAGEB6P1A0A0J9YX57 407 aa12.62□□□□□ -0.39
LRRC28-204ENST00000558172 TNNI2P48788 182 aa12.62□□□□□ -0.39
LRRC28-204ENST00000558172 TNFAIP1Q13829 316 aa12.62□□□□□ -0.39
LRRC28-204ENST00000558172 ANGEL2Q5VTE6 544 aaKnown RBP12.62□□□□□ -0.39
LRRC28-204ENST00000558172 CHADLQ6NUI6 762 aa12.62□□□□□ -0.39
LRRC28-204ENST00000558172 CDC42EP5Q6NZY7 148 aa12.62□□□□□ -0.39
LRRC28-204ENST00000558172 ADGRA1Q86SQ6 560 aa12.62□□□□□ -0.39
LRRC28-204ENST00000558172 RBM46Q8TBY0 533 aaKnown RBP12.62□□□□□ -0.39
LRRC28-204ENST00000558172 AATFQ9NY61 560 aaKnown RBP eCLIP12.62□□□□□ -0.39
LRRC28-204ENST00000558172 GGA3Q9NZ52 723 aa12.62□□□□□ -0.39
LRRC28-204ENST00000558172 MYH1P12882 1939 aa12.62□□□□□ -0.39
LRRC28-204ENST00000558172 TRPM7Q96QT4 1865 aa12.61□□□□□ -0.39
LRRC28-204ENST00000558172 NPM3O75607 178 aaKnown RBP12.61□□□□□ -0.39
LRRC28-204ENST00000558172 RHBDL3P58872 404 aa12.61□□□□□ -0.39
LRRC28-204ENST00000558172 ZMYM1Q5SVZ6 1142 aa12.61□□□□□ -0.39
LRRC28-204ENST00000558172 CDC37L1Q7L3B6 337 aa12.61□□□□□ -0.39
LRRC28-204ENST00000558172 FAM83AQ86UY5 434 aa12.61□□□□□ -0.39
LRRC28-204ENST00000558172 SKAP1Q86WV1 359 aa12.61□□□□□ -0.39
LRRC28-204ENST00000558172 SULF1Q8IWU6 871 aa12.61□□□□□ -0.39
LRRC28-204ENST00000558172 SMC1BQ8NDV3 1235 aa12.61□□□□□ -0.39
LRRC28-204ENST00000558172 AIDAQ96BJ3 306 aa12.61□□□□□ -0.39
LRRC28-204ENST00000558172 RIOK1Q9BRS2 568 aaKnown RBP12.61□□□□□ -0.39
LRRC28-204ENST00000558172 IDI2Q9BXS1 227 aa12.61□□□□□ -0.39
LRRC28-204ENST00000558172 VEZTQ9HBM0 779 aa12.61□□□□□ -0.39
LRRC28-204ENST00000558172 HELLSQ9NRZ9 838 aa12.61□□□□□ -0.39
LRRC28-204ENST00000558172 CLRN2A0PK11 232 aa12.6□□□□□ -0.39
LRRC28-204ENST00000558172 POTEIP0CG38 1075 aa12.6□□□□□ -0.39
LRRC28-204ENST00000558172 POTEJP0CG39 1038 aa12.6□□□□□ -0.39
LRRC28-204ENST00000558172 DYNLL1P63167 89 aaKnown RBP12.6□□□□□ -0.39
LRRC28-204ENST00000558172 TEX11Q8IYF3 940 aa12.6□□□□□ -0.39
LRRC28-204ENST00000558172 MIGA1Q8NAN2 632 aa12.6□□□□□ -0.39
LRRC28-204ENST00000558172 CRNKL1Q9BZJ0 848 aaKnown RBP12.6□□□□□ -0.39
LRRC28-204ENST00000558172 PUS7LQ9H0K6 701 aaKnown RBP12.6□□□□□ -0.39
LRRC28-204ENST00000558172 DIAPH3Q9NSV4 1193 aa12.6□□□□□ -0.39
LRRC28-204ENST00000558172 PPP2R3BQ9Y5P8 575 aa12.6□□□□□ -0.39
LRRC28-204ENST00000558172 ASTN2O75129 1339 aaPredicted RBP12.6□□□□□ -0.39
LRRC28-204ENST00000558172 ENTPD3O75355 529 aa12.59□□□□□ -0.39
LRRC28-204ENST00000558172 GNAT2P19087 354 aa12.59□□□□□ -0.39
LRRC28-204ENST00000558172 MFAP1P55081 439 aaKnown RBP12.59□□□□□ -0.39
LRRC28-204ENST00000558172 FSTL1Q12841 308 aa12.59□□□□□ -0.39
LRRC28-204ENST00000558172 MCMDC2Q4G0Z9 681 aa12.59□□□□□ -0.39
LRRC28-204ENST00000558172 KRT26Q7Z3Y9 468 aa12.59□□□□□ -0.39
LRRC28-204ENST00000558172 SH3RF3Q8TEJ3 882 aaPredicted RBP12.59□□□□□ -0.39
LRRC28-204ENST00000558172 FAM151AQ8WW52 585 aa12.59□□□□□ -0.39
LRRC28-204ENST00000558172 RUFY2Q8WXA3 655 aa12.59□□□□□ -0.39
LRRC28-204ENST00000558172 OSBP2Q969R2 916 aa12.59□□□□□ -0.39
LRRC28-204ENST00000558172 BAZ2AQ9UIF9 1905 aaKnown RBP12.58□□□□□ -0.39
LRRC28-204ENST00000558172 TCP10L2B9ZVM9 353 aa12.58□□□□□ -0.4
LRRC28-204ENST00000558172 WDHD1O75717 1129 aaPredicted RBP12.58□□□□□ -0.4
LRRC28-204ENST00000558172 MBD4O95243 580 aa12.58□□□□□ -0.4
LRRC28-204ENST00000558172 CHGBP05060 677 aa12.58□□□□□ -0.4
LRRC28-204ENST00000558172 NMIQ13287 307 aaPredicted RBP12.58□□□□□ -0.4
LRRC28-204ENST00000558172 SLFNL1Q499Z3 407 aa12.58□□□□□ -0.4
LRRC28-204ENST00000558172 MAP1SQ66K74 1059 aaPredicted RBP12.58□□□□□ -0.4
LRRC28-204ENST00000558172 USP48Q86UV5 1035 aa12.58□□□□□ -0.4
LRRC28-204ENST00000558172 LCORLQ8N3X6 602 aa12.58□□□□□ -0.4
LRRC28-204ENST00000558172 NAV1Q8NEY1 1877 aa12.58□□□□□ -0.4
LRRC28-204ENST00000558172 STRBPQ96SI9 672 aaKnown RBP12.58□□□□□ -0.4
LRRC28-204ENST00000558172 DEFB129Q9H1M3 183 aa12.58□□□□□ -0.4
LRRC28-204ENST00000558172 ARMT1Q9H993 441 aa12.58□□□□□ -0.4
LRRC28-204ENST00000558172 RPAP1Q9BWH6 1393 aaPredicted RBP12.57□□□□□ -0.4
LRRC28-204ENST00000558172 GPAA1O43292 621 aa12.57□□□□□ -0.4
LRRC28-204ENST00000558172 CHMLP26374 656 aa12.57□□□□□ -0.4
LRRC28-204ENST00000558172 USP5P45974 858 aa12.57□□□□□ -0.4
LRRC28-204ENST00000558172 CACNB3P54284 484 aa12.57□□□□□ -0.4
LRRC28-204ENST00000558172 NFIAQ12857 509 aa12.57□□□□□ -0.4
LRRC28-204ENST00000558172 RASA3Q14644 834 aa12.57□□□□□ -0.4
LRRC28-204ENST00000558172 CASC1Q6TDU7 716 aa12.57□□□□□ -0.4
LRRC28-204ENST00000558172 CWC27Q6UX04 472 aaKnown RBP12.57□□□□□ -0.4
LRRC28-204ENST00000558172 TGFBRAP1Q8WUH2 860 aa12.57□□□□□ -0.4
LRRC28-204ENST00000558172 HOOK2Q96ED9 719 aa12.57□□□□□ -0.4
LRRC28-204ENST00000558172 DDRGK1Q96HY6 314 aa12.57□□□□□ -0.4
LRRC28-204ENST00000558172 FAM227BQ96M60 508 aa12.57□□□□□ -0.4
LRRC28-204ENST00000558172 ATP8A2Q9NTI2 1148 aa12.57□□□□□ -0.4
LRRC28-204ENST00000558172 FAM198AQ9UFP1 575 aa12.57□□□□□ -0.4
LRRC28-204ENST00000558172 M0R2C6 588 aa12.56□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 104 ms