RNA–Protein interactions for RNA: ENST00000557945.5

CASC4-204, Transcript of cancer susceptibility 4, humanhuman

TSL 1 (best)

Gene CASC4, Length 1,386 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CASC4-204ENST00000557945 TCRBV5S4A2TA0A5A2 114 aa25.68■■□□□ 1.7
CASC4-204ENST00000557945 CLRN2A0PK11 232 aa25.68■■□□□ 1.7
CASC4-204ENST00000557945 KIF3CO14782 793 aa25.68■■□□□ 1.7
CASC4-204ENST00000557945 POTEIP0CG38 1075 aa25.68■■□□□ 1.7
CASC4-204ENST00000557945 POTEJP0CG39 1038 aa25.68■■□□□ 1.7
CASC4-204ENST00000557945 UBE3CQ15386 1083 aa25.68■■□□□ 1.7
CASC4-204ENST00000557945 AATFQ9NY61 560 aaKnown RBP eCLIP25.68■■□□□ 1.7
CASC4-204ENST00000557945 BAG3O95817 575 aa25.67■■□□□ 1.7
CASC4-204ENST00000557945 USP40Q9NVE5 1235 aa25.67■■□□□ 1.7
CASC4-204ENST00000557945 GGA3Q9NZ52 723 aa25.67■■□□□ 1.7
CASC4-204ENST00000557945 ANGEL2Q5VTE6 544 aaKnown RBP25.66■■□□□ 1.7
CASC4-204ENST00000557945 CDC42EP5Q6NZY7 148 aa25.66■■□□□ 1.7
CASC4-204ENST00000557945 LDHDQ86WU2 507 aa25.66■■□□□ 1.7
CASC4-204ENST00000557945 ZC3H15Q8WU90 426 aaKnown RBP25.66■■□□□ 1.7
CASC4-204ENST00000557945 VEZTQ9HBM0 779 aa25.66■■□□□ 1.7
CASC4-204ENST00000557945 TMOD2Q9NZR1 351 aa25.66■■□□□ 1.7
CASC4-204ENST00000557945 ZNF70Q9UC06 446 aaPredicted RBP25.66■■□□□ 1.7
CASC4-204ENST00000557945 MAGEB6P1A0A0J9YX57 407 aa25.65■■□□□ 1.7
CASC4-204ENST00000557945 BMP2KLQ5H9B9 411 aa25.65■■□□□ 1.7
CASC4-204ENST00000557945 MYH7P12883 1935 aa25.64■■□□□ 1.7
CASC4-204ENST00000557945 DYNLL1P63167 89 aaKnown RBP25.64■■□□□ 1.69
CASC4-204ENST00000557945 SPDYE2Q495Y8 402 aa25.64■■□□□ 1.69
CASC4-204ENST00000557945 APPBP2Q92624 585 aa25.64■■□□□ 1.69
CASC4-204ENST00000557945 DCPSQ96C86 337 aaKnown RBP25.64■■□□□ 1.69
CASC4-204ENST00000557945 RFX7Q2KHR2 1363 aa25.63■■□□□ 1.69
CASC4-204ENST00000557945 CACNB3P54284 484 aa25.63■■□□□ 1.69
CASC4-204ENST00000557945 PPP4CP60510 307 aa25.63■■□□□ 1.69
CASC4-204ENST00000557945 SH3RF3Q8TEJ3 882 aaPredicted RBP25.63■■□□□ 1.69
CASC4-204ENST00000557945 PLCG2P16885 1265 aa25.62■■□□□ 1.69
CASC4-204ENST00000557945 TICAM2Q86XR7 235 aa25.62■■□□□ 1.69
CASC4-204ENST00000557945 DIAPH3Q9NSV4 1193 aa25.62■■□□□ 1.69
CASC4-204ENST00000557945 SCAF8Q9UPN6 1271 aaKnown RBP25.62■■□□□ 1.69
CASC4-204ENST00000557945 HIP1O00291 1037 aa25.61■■□□□ 1.69
CASC4-204ENST00000557945 MBD4O95243 580 aa25.61■■□□□ 1.69
CASC4-204ENST00000557945 RHBDL3P58872 404 aa25.61■■□□□ 1.69
CASC4-204ENST00000557945 ZMYM1Q5SVZ6 1142 aa25.61■■□□□ 1.69
CASC4-204ENST00000557945 MAP1SQ66K74 1059 aaPredicted RBP25.61■■□□□ 1.69
CASC4-204ENST00000557945 APOBEC3FQ8IUX4 373 aaKnown RBP25.61■■□□□ 1.69
CASC4-204ENST00000557945 TEX11Q8IYF3 940 aa25.61■■□□□ 1.69
CASC4-204ENST00000557945 OSBP2Q969R2 916 aa25.61■■□□□ 1.69
CASC4-204ENST00000557945 AIDAQ96BJ3 306 aa25.61■■□□□ 1.69
CASC4-204ENST00000557945 PUS7LQ9H0K6 701 aaKnown RBP25.61■■□□□ 1.69
CASC4-204ENST00000557945 PGAP2Q9UHJ9 254 aa25.61■■□□□ 1.69
CASC4-204ENST00000557945 AK9Q5TCS8 1911 aa25.61■■□□□ 1.69
CASC4-204ENST00000557945 TCP10L2B9ZVM9 353 aa25.6■■□□□ 1.69
CASC4-204ENST00000557945 CHADLQ6NUI6 762 aa25.6■■□□□ 1.69
CASC4-204ENST00000557945 RIOK1Q9BRS2 568 aaKnown RBP25.6■■□□□ 1.69
CASC4-204ENST00000557945 ARMT1Q9H993 441 aa25.6■■□□□ 1.69
CASC4-204ENST00000557945 NMIQ13287 307 aaPredicted RBP25.59■■□□□ 1.69
CASC4-204ENST00000557945 CERS3Q8IU89 383 aa25.59■■□□□ 1.69
CASC4-204ENST00000557945 SULF1Q8IWU6 871 aa25.59■■□□□ 1.69
CASC4-204ENST00000557945 LCORLQ8N3X6 602 aa25.59■■□□□ 1.69
CASC4-204ENST00000557945 FAM227BQ96M60 508 aa25.59■■□□□ 1.69
CASC4-204ENST00000557945 PITPNM2Q9BZ72 1349 aa25.59■■□□□ 1.69
CASC4-204ENST00000557945 KRT26Q7Z3Y9 468 aa25.58■■□□□ 1.69
CASC4-204ENST00000557945 SEC62Q99442 399 aaKnown RBP25.58■■□□□ 1.69
CASC4-204ENST00000557945 M0R2C6 588 aa25.57■■□□□ 1.68
CASC4-204ENST00000557945 TOMM70O94826 608 aa25.57■■□□□ 1.68
CASC4-204ENST00000557945 TNNI2P48788 182 aa25.57■■□□□ 1.68
CASC4-204ENST00000557945 NFIAQ12857 509 aa25.57■■□□□ 1.68
CASC4-204ENST00000557945 PICALMQ13492 652 aa25.57■■□□□ 1.68
CASC4-204ENST00000557945 TNFAIP1Q13829 316 aa25.57■■□□□ 1.68
CASC4-204ENST00000557945 CWC27Q6UX04 472 aaKnown RBP25.57■■□□□ 1.68
CASC4-204ENST00000557945 USP48Q86UV5 1035 aa25.57■■□□□ 1.68
CASC4-204ENST00000557945 CRNKL1Q9BZJ0 848 aaKnown RBP25.57■■□□□ 1.68
CASC4-204ENST00000557945 HELLSQ9NRZ9 838 aa25.57■■□□□ 1.68
CASC4-204ENST00000557945 A0A0D9SFI3 127 aa25.56■■□□□ 1.68
CASC4-204ENST00000557945 ADM5C9JUS6 153 aa25.56■■□□□ 1.68
CASC4-204ENST00000557945 WDHD1O75717 1129 aaPredicted RBP25.56■■□□□ 1.68
CASC4-204ENST00000557945 CDC37L1Q7L3B6 337 aa25.56■■□□□ 1.68
CASC4-204ENST00000557945 GLIS2Q9BZE0 524 aaPredicted RBP25.56■■□□□ 1.68
CASC4-204ENST00000557945 ECM29Q5VYK3 1845 aa25.56■■□□□ 1.68
CASC4-204ENST00000557945 GPAA1O43292 621 aa25.56■■□□□ 1.68
CASC4-204ENST00000557945 CHMLP26374 656 aa25.56■■□□□ 1.68
CASC4-204ENST00000557945 USP5P45974 858 aa25.56■■□□□ 1.68
CASC4-204ENST00000557945 TCP10Q12799 353 aa25.56■■□□□ 1.68
CASC4-204ENST00000557945 MCMDC2Q4G0Z9 681 aa25.56■■□□□ 1.68
CASC4-204ENST00000557945 FKBP1CQ5VVH2 108 aa25.56■■□□□ 1.68
CASC4-204ENST00000557945 SMC1BQ8NDV3 1235 aa25.56■■□□□ 1.68
CASC4-204ENST00000557945 RBM46Q8TBY0 533 aaKnown RBP25.56■■□□□ 1.68
CASC4-204ENST00000557945 TGFBRAP1Q8WUH2 860 aa25.56■■□□□ 1.68
CASC4-204ENST00000557945 IDI2Q9BXS1 227 aa25.56■■□□□ 1.68
CASC4-204ENST00000557945 DEFB129Q9H1M3 183 aa25.56■■□□□ 1.68
CASC4-204ENST00000557945 RASA3Q14644 834 aa25.55■■□□□ 1.68
CASC4-204ENST00000557945 CCDC129Q6ZRS4 1044 aa25.55■■□□□ 1.68
CASC4-204ENST00000557945 STRBPQ96SI9 672 aaKnown RBP25.55■■□□□ 1.68
CASC4-204ENST00000557945 FAM198AQ9UFP1 575 aa25.55■■□□□ 1.68
CASC4-204ENST00000557945 MAPKAPK5Q8IW41 473 aa25.54■■□□□ 1.68
CASC4-204ENST00000557945 DDX4Q9NQI0 724 aaKnown RBP25.54■■□□□ 1.68
CASC4-204ENST00000557945 SLC4A4Q9Y6R1 1079 aa25.54■■□□□ 1.68
CASC4-204ENST00000557945 POLR2AP24928 1970 aaKnown RBP25.53■■□□□ 1.68
CASC4-204ENST00000557945 FAM83AQ86UY5 434 aa25.53■■□□□ 1.68
CASC4-204ENST00000557945 RUFY2Q8WXA3 655 aa25.53■■□□□ 1.68
CASC4-204ENST00000557945 CNTNAP1P78357 1384 aa25.52■■□□□ 1.68
CASC4-204ENST00000557945 PRKAB2O43741 272 aa25.52■■□□□ 1.68
CASC4-204ENST00000557945 ENTPD3O75355 529 aa25.52■■□□□ 1.68
CASC4-204ENST00000557945 PRAMEF18Q5VWM3 479 aa25.52■■□□□ 1.68
CASC4-204ENST00000557945 DLK2Q6UY11 383 aa25.52■■□□□ 1.68
CASC4-204ENST00000557945 SDR42E1Q8WUS8 393 aa25.52■■□□□ 1.68
CASC4-204ENST00000557945 FAM151AQ8WW52 585 aa25.52■■□□□ 1.68
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms