RNA–Protein interactions for RNA: ENST00000557076.5

SCFD1-223, Transcript of sec1 family domain containing 1, humanhuman

TSL 3

Gene SCFD1, Length 743 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-223ENST00000557076 CLDN10P78369 228 aa6.85□□□□□ -1.31
SCFD1-223ENST00000557076 TRIM28Q13263 835 aaKnown RBP6.85□□□□□ -1.31
SCFD1-223ENST00000557076 MICALL1Q8N3F8 863 aa6.85□□□□□ -1.31
SCFD1-223ENST00000557076 PHACTR1Q9C0D0 580 aa6.85□□□□□ -1.31
SCFD1-223ENST00000557076 NLRP2Q9NX02 1062 aa6.85□□□□□ -1.31
SCFD1-223ENST00000557076 KCNH4Q9UQ05 1017 aa6.85□□□□□ -1.31
SCFD1-223ENST00000557076 STARD13Q9Y3M8 1113 aa6.85□□□□□ -1.31
SCFD1-223ENST00000557076 ALBP02768 609 aa6.84□□□□□ -1.31
SCFD1-223ENST00000557076 ITGB7P26010 798 aa6.84□□□□□ -1.31
SCFD1-223ENST00000557076 HTRA3P83110 453 aa6.84□□□□□ -1.31
SCFD1-223ENST00000557076 SIX5Q8N196 739 aa6.84□□□□□ -1.31
SCFD1-223ENST00000557076 OGFOD1Q8N543 542 aa6.84□□□□□ -1.31
SCFD1-223ENST00000557076 HSH2DQ96JZ2 352 aa6.84□□□□□ -1.31
SCFD1-223ENST00000557076 EFCC1Q9HA90 598 aa6.84□□□□□ -1.31
SCFD1-223ENST00000557076 CCNL1Q9UK58 526 aaPredicted RBP6.84□□□□□ -1.31
SCFD1-223ENST00000557076 TNS2Q63HR2 1409 aa6.84□□□□□ -1.32
SCFD1-223ENST00000557076 PPIP5K1Q6PFW1 1433 aa6.84□□□□□ -1.32
SCFD1-223ENST00000557076 LRRC37A3O60309 1634 aa6.83□□□□□ -1.32
SCFD1-223ENST00000557076 KAT6BQ8WYB5 2073 aa6.83□□□□□ -1.32
SCFD1-223ENST00000557076 IGSF1Q8N6C5 1336 aa6.83□□□□□ -1.32
SCFD1-223ENST00000557076 SFI1A8K8P3 1242 aa6.83□□□□□ -1.32
SCFD1-223ENST00000557076 NID1P14543 1247 aa6.83□□□□□ -1.32
SCFD1-223ENST00000557076 TYRO3Q06418 890 aa6.83□□□□□ -1.32
SCFD1-223ENST00000557076 COL9A3Q14050 684 aaPredicted RBP6.83□□□□□ -1.32
SCFD1-223ENST00000557076 RSPO4Q2I0M5 234 aaPredicted RBP6.83□□□□□ -1.32
SCFD1-223ENST00000557076 MSL1Q68DK7 614 aa6.83□□□□□ -1.32
SCFD1-223ENST00000557076 C16orf71Q8IYS4 520 aaPredicted RBP6.83□□□□□ -1.32
SCFD1-223ENST00000557076 STAG2Q8N3U4 1231 aa6.83□□□□□ -1.32
SCFD1-223ENST00000557076 DDX54Q8TDD1 881 aaKnown RBP6.83□□□□□ -1.32
SCFD1-223ENST00000557076 ADAMTS19Q8TE59 1207 aa6.83□□□□□ -1.32
SCFD1-223ENST00000557076 SUSD3Q96L08 255 aa6.83□□□□□ -1.32
SCFD1-223ENST00000557076 NMRK2Q9NPI5 230 aa6.83□□□□□ -1.32
SCFD1-223ENST00000557076 MKRN1Q9UHC7 482 aaKnown RBP6.83□□□□□ -1.32
SCFD1-223ENST00000557076 HCN4Q9Y3Q4 1203 aa6.83□□□□□ -1.32
SCFD1-223ENST00000557076 CPSF1Q10570 1443 aaKnown RBP6.83□□□□□ -1.32
SCFD1-223ENST00000557076 PAPPAQ13219 1627 aa6.83□□□□□ -1.32
SCFD1-223ENST00000557076 TTC21BQ7Z4L5 1316 aa6.82□□□□□ -1.32
SCFD1-223ENST00000557076 POM121CA8CG34 1229 aa6.82□□□□□ -1.32
SCFD1-223ENST00000557076 PPP1R12BO60237 982 aaPredicted RBP6.82□□□□□ -1.32
SCFD1-223ENST00000557076 ZMYM1Q5SVZ6 1142 aa6.82□□□□□ -1.32
SCFD1-223ENST00000557076 HDGFL1Q5TGJ6 251 aa6.82□□□□□ -1.32
SCFD1-223ENST00000557076 RAB44Q7Z6P3 723 aaPredicted RBP6.82□□□□□ -1.32
SCFD1-223ENST00000557076 GAS2L2Q8NHY3 880 aa6.82□□□□□ -1.32
SCFD1-223ENST00000557076 SYTL4Q96C24 671 aaPredicted RBP6.82□□□□□ -1.32
SCFD1-223ENST00000557076 UCN2Q96RP3 112 aa6.82□□□□□ -1.32
SCFD1-223ENST00000557076 COL24A1Q17RW2 1714 aa6.81□□□□□ -1.32
SCFD1-223ENST00000557076 TTC21AQ8NDW8 1320 aa6.81□□□□□ -1.32
SCFD1-223ENST00000557076 LILRB5O75023 590 aa6.81□□□□□ -1.32
SCFD1-223ENST00000557076 HSPA1AP0DMV8 641 aaKnown RBP6.81□□□□□ -1.32
SCFD1-223ENST00000557076 HSPA1BP0DMV9 641 aaKnown RBP6.81□□□□□ -1.32
SCFD1-223ENST00000557076 TGFB2P61812 414 aa6.81□□□□□ -1.32
SCFD1-223ENST00000557076 NKAPLQ5M9Q1 402 aa6.81□□□□□ -1.32
SCFD1-223ENST00000557076 C20orf204Q6ZNR8 217 aa6.81□□□□□ -1.32
SCFD1-223ENST00000557076 C8orf86Q6ZUL3 223 aa6.81□□□□□ -1.32
SCFD1-223ENST00000557076 TPSG1Q9NRR2 321 aa6.81□□□□□ -1.32
SCFD1-223ENST00000557076 SLIT3O75094 1523 aa6.81□□□□□ -1.32
SCFD1-223ENST00000557076 COL18A1P39060 1754 aa6.8□□□□□ -1.32
SCFD1-223ENST00000557076 C9orf172C9J069 976 aa6.8□□□□□ -1.32
SCFD1-223ENST00000557076 FAM229AH3BQW9 127 aa6.8□□□□□ -1.32
SCFD1-223ENST00000557076 ARHGAP27Q6ZUM4 889 aa6.8□□□□□ -1.32
SCFD1-223ENST00000557076 ALDH16A1Q8IZ83 802 aa6.8□□□□□ -1.32
SCFD1-223ENST00000557076 TSEN2Q8NCE0 465 aaKnown RBP6.8□□□□□ -1.32
SCFD1-223ENST00000557076 ZNF280CQ8ND82 737 aa6.8□□□□□ -1.32
SCFD1-223ENST00000557076 ANKRD24Q8TF21 1146 aa6.8□□□□□ -1.32
SCFD1-223ENST00000557076 BHMTQ93088 406 aa6.8□□□□□ -1.32
SCFD1-223ENST00000557076 ANKRD36BQ8N2N9 1353 aa6.8□□□□□ -1.32
SCFD1-223ENST00000557076 DYRK3O43781 588 aa6.79□□□□□ -1.32
SCFD1-223ENST00000557076 TRAPPC3LQ5T215 181 aa6.79□□□□□ -1.32
SCFD1-223ENST00000557076 BTLAQ7Z6A9 289 aa6.79□□□□□ -1.32
SCFD1-223ENST00000557076 SMC1BQ8NDV3 1235 aa6.79□□□□□ -1.32
SCFD1-223ENST00000557076 ZCRB1Q8TBF4 217 aaKnown RBP6.79□□□□□ -1.32
SCFD1-223ENST00000557076 ZNF594Q96JF6 807 aaPredicted RBP6.79□□□□□ -1.32
SCFD1-223ENST00000557076 C2orf49Q9BVC5 232 aaPredicted RBP6.79□□□□□ -1.32
SCFD1-223ENST00000557076 UBE2OQ9C0C9 1292 aaKnown RBP6.79□□□□□ -1.32
SCFD1-223ENST00000557076 KDM2BQ8NHM5 1336 aa6.78□□□□□ -1.32
SCFD1-223ENST00000557076 CENPJQ9HC77 1338 aaPredicted RBP6.78□□□□□ -1.32
SCFD1-223ENST00000557076 C21orf2O43822 256 aa6.78□□□□□ -1.32
SCFD1-223ENST00000557076 SEC13P55735 322 aa6.78□□□□□ -1.32
SCFD1-223ENST00000557076 GRIK4Q16099 956 aa6.78□□□□□ -1.32
SCFD1-223ENST00000557076 IER5Q5VY09 327 aa6.78□□□□□ -1.32
SCFD1-223ENST00000557076 C9orf131Q5VYM1 1079 aa6.78□□□□□ -1.32
SCFD1-223ENST00000557076 IP6K1Q92551 441 aa6.78□□□□□ -1.32
SCFD1-223ENST00000557076 PRDM10Q9NQV6 1147 aa6.78□□□□□ -1.32
SCFD1-223ENST00000557076 SLC6A14Q9UN76 642 aa6.78□□□□□ -1.32
SCFD1-223ENST00000557076 USP47Q96K76 1375 aa6.78□□□□□ -1.32
SCFD1-223ENST00000557076 NHSQ6T4R5 1651 aa6.77□□□□□ -1.32
SCFD1-223ENST00000557076 ABCC6O95255 1503 aa6.77□□□□□ -1.33
SCFD1-223ENST00000557076 A0A0G2JLW4 131 aa6.77□□□□□ -1.33
SCFD1-223ENST00000557076 DKK1O94907 266 aa6.77□□□□□ -1.33
SCFD1-223ENST00000557076 ELNP15502 786 aa6.77□□□□□ -1.33
SCFD1-223ENST00000557076 RASA1P20936 1047 aa6.77□□□□□ -1.33
SCFD1-223ENST00000557076 RAC1P63000 192 aa6.77□□□□□ -1.33
SCFD1-223ENST00000557076 NRG1Q02297 640 aaPredicted RBP6.77□□□□□ -1.33
SCFD1-223ENST00000557076 SCG3Q8WXD2 468 aaKnown RBP6.77□□□□□ -1.33
SCFD1-223ENST00000557076 JPH1Q9HDC5 661 aaPredicted RBP6.77□□□□□ -1.33
SCFD1-223ENST00000557076 BCS1LQ9Y276 419 aa6.77□□□□□ -1.33
SCFD1-223ENST00000557076 NSD2O96028 1365 aa6.77□□□□□ -1.33
SCFD1-223ENST00000557076 EVC2Q86UK5 1308 aa6.76□□□□□ -1.33
SCFD1-223ENST00000557076 TRPM1Q7Z4N2 1603 aa6.76□□□□□ -1.33
SCFD1-223ENST00000557076 ITSN1Q15811 1721 aa6.76□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms