RNA–Protein interactions for RNA: ENST00000556767.1

CCDC88C-212, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 2

Gene CCDC88C, Length 676 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-212ENST00000556767 GAKO14976 1311 aa13.91□□□□□ -0.18
CCDC88C-212ENST00000556767 TTC41PQ6P2S7 1318 aa13.91□□□□□ -0.18
CCDC88C-212ENST00000556767 ERC2O15083 957 aa13.91□□□□□ -0.18
CCDC88C-212ENST00000556767 CYP7A1P22680 504 aa13.91□□□□□ -0.18
CCDC88C-212ENST00000556767 NF2P35240 595 aa13.91□□□□□ -0.18
CCDC88C-212ENST00000556767 TTLL12Q14166 644 aaPredicted RBP13.91□□□□□ -0.18
CCDC88C-212ENST00000556767 RASA3Q14644 834 aa13.91□□□□□ -0.18
CCDC88C-212ENST00000556767 CDC42EP5Q6NZY7 148 aa13.91□□□□□ -0.18
CCDC88C-212ENST00000556767 CHD1LQ86WJ1 897 aa13.91□□□□□ -0.18
CCDC88C-212ENST00000556767 MAGEB6Q8N7X4 407 aa13.91□□□□□ -0.18
CCDC88C-212ENST00000556767 CREBZFQ9NS37 354 aa13.91□□□□□ -0.18
CCDC88C-212ENST00000556767 TRPM7Q96QT4 1865 aa13.91□□□□□ -0.18
CCDC88C-212ENST00000556767 MYO5AQ9Y4I1 1855 aaKnown RBP13.91□□□□□ -0.18
CCDC88C-212ENST00000556767 NUCB1Q02818 461 aa13.9□□□□□ -0.18
CCDC88C-212ENST00000556767 CST9Q5W186 159 aa13.9□□□□□ -0.18
CCDC88C-212ENST00000556767 ZNF384Q8TF68 577 aa13.9□□□□□ -0.18
CCDC88C-212ENST00000556767 FAM163AQ96GL9 167 aaPredicted RBP13.9□□□□□ -0.18
CCDC88C-212ENST00000556767 AATFQ9NY61 560 aaKnown RBP eCLIP13.9□□□□□ -0.18
CCDC88C-212ENST00000556767 PPP2R3BQ9Y5P8 575 aa13.9□□□□□ -0.18
CCDC88C-212ENST00000556767 MAST2Q6P0Q8 1798 aa13.89□□□□□ -0.19
CCDC88C-212ENST00000556767 GPR75-ASB3A0A0A6YYF3 556 aa13.89□□□□□ -0.19
CCDC88C-212ENST00000556767 IGSF3O75054 1194 aa13.89□□□□□ -0.19
CCDC88C-212ENST00000556767 GLRX3O76003 335 aaKnown RBP13.89□□□□□ -0.19
CCDC88C-212ENST00000556767 BAG3O95817 575 aa13.89□□□□□ -0.19
CCDC88C-212ENST00000556767 MAP4K4O95819 1239 aaPredicted RBP13.89□□□□□ -0.19
CCDC88C-212ENST00000556767 TCP10Q12799 353 aa13.89□□□□□ -0.19
CCDC88C-212ENST00000556767 PRKG1Q13976 671 aa13.89□□□□□ -0.19
CCDC88C-212ENST00000556767 SLC9C2Q5TAH2 1124 aa13.89□□□□□ -0.19
CCDC88C-212ENST00000556767 PAXIP1Q6ZW49 1069 aaPredicted RBP13.89□□□□□ -0.19
CCDC88C-212ENST00000556767 C2orf69Q8N8R5 385 aa13.89□□□□□ -0.19
CCDC88C-212ENST00000556767 DDX24Q9GZR7 859 aaKnown RBP eCLIP13.89□□□□□ -0.19
CCDC88C-212ENST00000556767 GBA2Q9HCG7 927 aaPredicted RBP13.89□□□□□ -0.19
CCDC88C-212ENST00000556767 PICALMQ13492 652 aa13.88□□□□□ -0.19
CCDC88C-212ENST00000556767 SUPT20HL1Q3ZLR7 823 aa13.88□□□□□ -0.19
CCDC88C-212ENST00000556767 ADGRA1Q86SQ6 560 aa13.88□□□□□ -0.19
CCDC88C-212ENST00000556767 MIGA1Q8NAN2 632 aa13.88□□□□□ -0.19
CCDC88C-212ENST00000556767 TMEM39BQ9GZU3 492 aa13.88□□□□□ -0.19
CCDC88C-212ENST00000556767 MKRN1Q9UHC7 482 aaKnown RBP13.88□□□□□ -0.19
CCDC88C-212ENST00000556767 PDE6AP16499 860 aa13.87□□□□□ -0.19
CCDC88C-212ENST00000556767 PDE1AP54750 535 aa13.87□□□□□ -0.19
CCDC88C-212ENST00000556767 NFIAQ12857 509 aa13.87□□□□□ -0.19
CCDC88C-212ENST00000556767 GRM1Q13255 1194 aa13.87□□□□□ -0.19
CCDC88C-212ENST00000556767 NBPF12Q5TAG4 269 aaPredicted RBP13.87□□□□□ -0.19
CCDC88C-212ENST00000556767 FKBP1CQ5VVH2 108 aa13.87□□□□□ -0.19
CCDC88C-212ENST00000556767 TEX11Q8IYF3 940 aa13.87□□□□□ -0.19
CCDC88C-212ENST00000556767 PI4K2BQ8TCG2 481 aa13.87□□□□□ -0.19
CCDC88C-212ENST00000556767 ZBTB4Q9P1Z0 1013 aaPredicted RBP13.87□□□□□ -0.19
CCDC88C-212ENST00000556767 DOCK2Q92608 1830 aa13.87□□□□□ -0.19
CCDC88C-212ENST00000556767 ZNF532Q9HCE3 1301 aa13.87□□□□□ -0.19
CCDC88C-212ENST00000556767 CNTNAP1P78357 1384 aa13.86□□□□□ -0.19
CCDC88C-212ENST00000556767 PLCG2P16885 1265 aa13.86□□□□□ -0.19
CCDC88C-212ENST00000556767 RGS3P49796 1198 aa13.86□□□□□ -0.19
CCDC88C-212ENST00000556767 HUNKP57058 714 aa13.86□□□□□ -0.19
CCDC88C-212ENST00000556767 RHBDL3P58872 404 aa13.86□□□□□ -0.19
CCDC88C-212ENST00000556767 DYNLL1P63167 89 aaKnown RBP13.86□□□□□ -0.19
CCDC88C-212ENST00000556767 ZSCAN25Q6NSZ9 544 aa13.86□□□□□ -0.19
CCDC88C-212ENST00000556767 MOB2Q70IA6 237 aa13.86□□□□□ -0.19
CCDC88C-212ENST00000556767 FAM83AQ86UY5 434 aa13.86□□□□□ -0.19
CCDC88C-212ENST00000556767 ZSCAN29Q8IWY8 852 aaPredicted RBP13.86□□□□□ -0.19
CCDC88C-212ENST00000556767 SH3RF3Q8TEJ3 882 aaPredicted RBP13.86□□□□□ -0.19
CCDC88C-212ENST00000556767 CCDC136Q96JN2 1154 aa13.86□□□□□ -0.19
CCDC88C-212ENST00000556767 ANGEL1Q9UNK9 670 aaKnown RBP13.86□□□□□ -0.19
CCDC88C-212ENST00000556767 TLL2Q9Y6L7 1015 aa13.86□□□□□ -0.19
CCDC88C-212ENST00000556767 SALL3Q9BXA9 1300 aa13.86□□□□□ -0.19
CCDC88C-212ENST00000556767 MAGEB6P1A0A0J9YX57 407 aa13.85□□□□□ -0.19
CCDC88C-212ENST00000556767 UBE2Q2LH0YL09 131 aa13.85□□□□□ -0.19
CCDC88C-212ENST00000556767 PPP1R12BO60237 982 aaPredicted RBP13.85□□□□□ -0.19
CCDC88C-212ENST00000556767 WDHD1O75717 1129 aaPredicted RBP13.85□□□□□ -0.19
CCDC88C-212ENST00000556767 DEFB115Q30KQ5 88 aa13.85□□□□□ -0.19
CCDC88C-212ENST00000556767 TMED8Q6PL24 325 aaPredicted RBP13.85□□□□□ -0.19
CCDC88C-212ENST00000556767 ARMC9Q7Z3E5 817 aa13.85□□□□□ -0.19
CCDC88C-212ENST00000556767 CDAN1Q8IWY9 1227 aa13.85□□□□□ -0.19
CCDC88C-212ENST00000556767 KBTBD3Q8NAB2 608 aa13.85□□□□□ -0.19
CCDC88C-212ENST00000556767 FAM151AQ8WW52 585 aa13.85□□□□□ -0.19
CCDC88C-212ENST00000556767 FSD1Q9BTV5 496 aa13.85□□□□□ -0.19
CCDC88C-212ENST00000556767 IDI2Q9BXS1 227 aa13.85□□□□□ -0.19
CCDC88C-212ENST00000556767 FAM198AQ9UFP1 575 aa13.85□□□□□ -0.19
CCDC88C-212ENST00000556767 STAP2Q9UGK3 403 aa13.85□□□□□ -0.19
CCDC88C-212ENST00000556767 FZD1Q9UP38 647 aa13.85□□□□□ -0.19
CCDC88C-212ENST00000556767 AK9Q5TCS8 1911 aa13.85□□□□□ -0.19
CCDC88C-212ENST00000556767 ENTPD3O75355 529 aa13.84□□□□□ -0.19
CCDC88C-212ENST00000556767 ADD2P35612 726 aa13.84□□□□□ -0.19
CCDC88C-212ENST00000556767 PPP4CP60510 307 aa13.84□□□□□ -0.19
CCDC88C-212ENST00000556767 FKBP1BP68106 108 aa13.84□□□□□ -0.19
CCDC88C-212ENST00000556767 LRRFIP1Q32MZ4 808 aaKnown RBP13.84□□□□□ -0.19
CCDC88C-212ENST00000556767 SLFNL1Q499Z3 407 aa13.84□□□□□ -0.19
CCDC88C-212ENST00000556767 SAPCD2Q86UD0 394 aa13.84□□□□□ -0.19
CCDC88C-212ENST00000556767 PLEKHM2Q8IWE5 1019 aa13.84□□□□□ -0.19
CCDC88C-212ENST00000556767 ZFPM1Q8IX07 1006 aa13.84□□□□□ -0.19
CCDC88C-212ENST00000556767 TGFBRAP1Q8WUH2 860 aa13.84□□□□□ -0.19
CCDC88C-212ENST00000556767 TEPSINQ96N21 525 aa13.84□□□□□ -0.19
CCDC88C-212ENST00000556767 TRIM6-TRIM34B2RNG4 842 aa13.83□□□□□ -0.2
CCDC88C-212ENST00000556767 CHGBP05060 677 aa13.83□□□□□ -0.2
CCDC88C-212ENST00000556767 USP5P45974 858 aa13.83□□□□□ -0.2
CCDC88C-212ENST00000556767 CENPQQ7L2Z9 268 aaPredicted RBP13.83□□□□□ -0.2
CCDC88C-212ENST00000556767 CERS3Q8IU89 383 aa13.83□□□□□ -0.2
CCDC88C-212ENST00000556767 MAPKAPK5Q8IW41 473 aa13.83□□□□□ -0.2
CCDC88C-212ENST00000556767 HOOK2Q96ED9 719 aa13.83□□□□□ -0.2
CCDC88C-212ENST00000556767 DDX4Q9NQI0 724 aaKnown RBP13.83□□□□□ -0.2
CCDC88C-212ENST00000556767 PAPPA2Q9BXP8 1791 aa13.83□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 17 ms