RNA–Protein interactions for RNA: ENST00000555774.5

SHMT2-222, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 2,311 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-222ENST00000555774 HSPA2P54652 639 aa15.63■□□□□ 0.09
SHMT2-222ENST00000555774 AIDAQ96BJ3 306 aa15.63■□□□□ 0.09
SHMT2-222ENST00000555774 TIAM2Q8IVF5 1701 aa15.63■□□□□ 0.09
SHMT2-222ENST00000555774 ZBTB43O43298 467 aa15.63■□□□□ 0.09
SHMT2-222ENST00000555774 APPP05067 770 aa15.63■□□□□ 0.09
SHMT2-222ENST00000555774 SKILP12757 684 aa15.63■□□□□ 0.09
SHMT2-222ENST00000555774 SLC5A1P13866 664 aa15.63■□□□□ 0.09
SHMT2-222ENST00000555774 KRT40Q6A162 431 aa15.63■□□□□ 0.09
SHMT2-222ENST00000555774 ZNF34Q8IZ26 560 aa15.63■□□□□ 0.09
SHMT2-222ENST00000555774 CCDC150Q8NCX0 1101 aa15.63■□□□□ 0.09
SHMT2-222ENST00000555774 CNNM2Q9H8M5 875 aa15.63■□□□□ 0.09
SHMT2-222ENST00000555774 PLCH1Q4KWH8 1693 aa15.63■□□□□ 0.09
SHMT2-222ENST00000555774 PATL2C9JE40 543 aaKnown RBP15.62■□□□□ 0.09
SHMT2-222ENST00000555774 IKBKBO14920 756 aa15.62■□□□□ 0.09
SHMT2-222ENST00000555774 PHKA1P46020 1223 aa15.62■□□□□ 0.09
SHMT2-222ENST00000555774 CCZ1BP86790 482 aa15.62■□□□□ 0.09
SHMT2-222ENST00000555774 CCZ1P86791 482 aaPredicted RBP15.62■□□□□ 0.09
SHMT2-222ENST00000555774 TRIM29Q14134 588 aa15.62■□□□□ 0.09
SHMT2-222ENST00000555774 DPCR1Q3MIW9 517 aa15.62■□□□□ 0.09
SHMT2-222ENST00000555774 VPS37DQ86XT2 251 aa15.62■□□□□ 0.09
SHMT2-222ENST00000555774 IGDCC4Q8TDY8 1250 aa15.62■□□□□ 0.09
SHMT2-222ENST00000555774 TSC1Q92574 1164 aa15.62■□□□□ 0.09
SHMT2-222ENST00000555774 HPSEQ9Y251 543 aa15.62■□□□□ 0.09
SHMT2-222ENST00000555774 ZBTB1Q9Y2K1 713 aa15.62■□□□□ 0.09
SHMT2-222ENST00000555774 KIF2AO00139 706 aaPredicted RBP15.62■□□□□ 0.09
SHMT2-222ENST00000555774 U2AF2P26368 475 aaKnown RBP eCLIP15.62■□□□□ 0.094e-8■■□□□ 14.1
SHMT2-222ENST00000555774 MAP3K12Q12852 859 aa15.62■□□□□ 0.09
SHMT2-222ENST00000555774 WASF1Q92558 559 aa15.62■□□□□ 0.09
SHMT2-222ENST00000555774 MTA3Q9BTC8 594 aa15.62■□□□□ 0.09
SHMT2-222ENST00000555774 LY9Q9HBG7 655 aa15.62■□□□□ 0.09
SHMT2-222ENST00000555774 GOLGA8AA7E2F4 631 aa15.61■□□□□ 0.09
SHMT2-222ENST00000555774 MYO1BO43795 1136 aa15.61■□□□□ 0.09
SHMT2-222ENST00000555774 IARSP41252 1262 aaKnown RBP15.61■□□□□ 0.09
SHMT2-222ENST00000555774 KCNJ6P48051 423 aa15.61■□□□□ 0.09
SHMT2-222ENST00000555774 CEP135Q66GS9 1140 aa15.61■□□□□ 0.09
SHMT2-222ENST00000555774 NYAP1Q6ZVC0 841 aa15.61■□□□□ 0.09
SHMT2-222ENST00000555774 DZIP3Q86Y13 1208 aaKnown RBP15.61■□□□□ 0.09
SHMT2-222ENST00000555774 RAB11FIP4Q86YS3 637 aa15.61■□□□□ 0.09
SHMT2-222ENST00000555774 SPATA5Q8NB90 893 aa15.61■□□□□ 0.09
SHMT2-222ENST00000555774 CCDC112Q8NEF3 446 aa15.61■□□□□ 0.09
SHMT2-222ENST00000555774 SLC4A9Q96Q91 983 aa15.61■□□□□ 0.09
SHMT2-222ENST00000555774 TUBE1Q9UJT0 475 aa15.61■□□□□ 0.09
SHMT2-222ENST00000555774 WWC3Q9ULE0 1092 aa15.61■□□□□ 0.09
SHMT2-222ENST00000555774 B4E1Z4 1266 aa15.61■□□□□ 0.09
SHMT2-222ENST00000555774 GNAT2P19087 354 aa15.61■□□□□ 0.09
SHMT2-222ENST00000555774 SYKP43405 635 aa15.61■□□□□ 0.09
SHMT2-222ENST00000555774 GNL2Q13823 731 aaKnown RBP15.61■□□□□ 0.09
SHMT2-222ENST00000555774 PTPAQ15257 358 aa15.61■□□□□ 0.09
SHMT2-222ENST00000555774 NTRK3Q16288 839 aa15.61■□□□□ 0.09
SHMT2-222ENST00000555774 FILIP1Q7Z7B0 1213 aa15.61■□□□□ 0.09
SHMT2-222ENST00000555774 ELOA2Q8IYF1 753 aaPredicted RBP15.61■□□□□ 0.09
SHMT2-222ENST00000555774 PDCL2Q8N4E4 241 aa15.61■□□□□ 0.09
SHMT2-222ENST00000555774 KRT23Q9C075 422 aa15.61■□□□□ 0.09
SHMT2-222ENST00000555774 EIF4ENIF1Q9NRA8 985 aaKnown RBP15.61■□□□□ 0.09
SHMT2-222ENST00000555774 COL14A1Q05707 1796 aaKnown RBP15.6■□□□□ 0.09
SHMT2-222ENST00000555774 WDHD1O75717 1129 aaPredicted RBP15.6■□□□□ 0.09
SHMT2-222ENST00000555774 CDC27P30260 824 aa15.6■□□□□ 0.09
SHMT2-222ENST00000555774 TMEM67Q5HYA8 995 aa15.6■□□□□ 0.09
SHMT2-222ENST00000555774 NFXL1Q6ZNB6 911 aa15.6■□□□□ 0.09
SHMT2-222ENST00000555774 NBPF11Q86T75 865 aa15.6■□□□□ 0.09
SHMT2-222ENST00000555774 SMAP1Q8IYB5 467 aaPredicted RBP15.6■□□□□ 0.09
SHMT2-222ENST00000555774 GJB4Q9NTQ9 266 aa15.6■□□□□ 0.09
SHMT2-222ENST00000555774 DOCK2Q92608 1830 aa15.6■□□□□ 0.09
SHMT2-222ENST00000555774 MROH7-TTC4A0A0A0MT08 1334 aa15.6■□□□□ 0.09
SHMT2-222ENST00000555774 UBN2Q6ZU65 1347 aa15.6■□□□□ 0.09
SHMT2-222ENST00000555774 A0A087WWV3 80 aa15.6■□□□□ 0.09
SHMT2-222ENST00000555774 CUTAO60888 179 aa15.6■□□□□ 0.09
SHMT2-222ENST00000555774 RCAN1P53805 252 aa15.6■□□□□ 0.09
SHMT2-222ENST00000555774 PTPN14Q15678 1187 aa15.6■□□□□ 0.09
SHMT2-222ENST00000555774 RESP18Q5W5W9 173 aa15.6■□□□□ 0.09
SHMT2-222ENST00000555774 IFNL3Q8IZI9 196 aa15.6■□□□□ 0.09
SHMT2-222ENST00000555774 ERCC4Q92889 916 aaPredicted RBP15.6■□□□□ 0.09
SHMT2-222ENST00000555774 MAP3K14Q99558 947 aa15.6■□□□□ 0.09
SHMT2-222ENST00000555774 NAPBQ9H115 298 aa15.6■□□□□ 0.09
SHMT2-222ENST00000555774 BTG4Q9NY30 223 aa15.6■□□□□ 0.09
SHMT2-222ENST00000555774 NUP98P52948 1817 aa15.59■□□□□ 0.09
SHMT2-222ENST00000555774 NRDCO43847 1150 aa15.59■□□□□ 0.09
SHMT2-222ENST00000555774 FMNL1O95466 1100 aaPredicted RBP15.59■□□□□ 0.09
SHMT2-222ENST00000555774 ARID5BQ14865 1188 aa15.59■□□□□ 0.09
SHMT2-222ENST00000555774 MICU3Q86XE3 530 aa15.59■□□□□ 0.09
SHMT2-222ENST00000555774 CCAR2Q8N163 923 aaKnown RBP15.59■□□□□ 0.09
SHMT2-222ENST00000555774 SLC12A7Q9Y666 1083 aa15.59■□□□□ 0.09
SHMT2-222ENST00000555774 PNPLA7Q6ZV29 1317 aa15.59■□□□□ 0.09
SHMT2-222ENST00000555774 RTL9Q8NET4 1388 aa15.59■□□□□ 0.09
SHMT2-222ENST00000555774 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP15.59■□□□□ 0.09
SHMT2-222ENST00000555774 TUBB4AP04350 444 aa15.59■□□□□ 0.09
SHMT2-222ENST00000555774 SSRP1Q08945 709 aaKnown RBP15.59■□□□□ 0.09
SHMT2-222ENST00000555774 NCAPHQ15003 741 aa15.59■□□□□ 0.09
SHMT2-222ENST00000555774 GNL3Q9BVP2 549 aaKnown RBP eCLIP15.59■□□□□ 0.095e-8■■■□□ 18.8
SHMT2-222ENST00000555774 EPB41L4AQ9HCS5 686 aaPredicted RBP15.59■□□□□ 0.09
SHMT2-222ENST00000555774 DENND2AQ9ULE3 1009 aa15.59■□□□□ 0.09
SHMT2-222ENST00000555774 MBD4O95243 580 aa15.58■□□□□ 0.08
SHMT2-222ENST00000555774 SMC2O95347 1197 aa15.58■□□□□ 0.08
SHMT2-222ENST00000555774 IFNAR1P17181 557 aa15.58■□□□□ 0.08
SHMT2-222ENST00000555774 AKNAD1Q5T1N1 836 aa15.58■□□□□ 0.08
SHMT2-222ENST00000555774 NACAP1Q9BZK3 213 aa15.58■□□□□ 0.08
SHMT2-222ENST00000555774 XPO4Q9C0E2 1151 aaKnown RBP15.58■□□□□ 0.08
SHMT2-222ENST00000555774 FAM217BQ9NTX9 383 aaPredicted RBP15.58■□□□□ 0.08
SHMT2-222ENST00000555774 IFIT3O14879 490 aaKnown RBP15.57■□□□□ 0.08
SHMT2-222ENST00000555774 CBFA2T2O43439 604 aa15.57■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms