RNA–Protein interactions for RNA: ENST00000553888.5

VIPAS39-206, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

APPRIS P1 TSL 2 BASIC

Gene VIPAS39, Length 2,934 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-206ENST00000553888 UFL1O94874 794 aa15.04■□□□□ -0
VIPAS39-206ENST00000553888 NSUN4Q96CB9 384 aaKnown RBP15.04■□□□□ -0
VIPAS39-206ENST00000553888 RBM17Q96I25 401 aaKnown RBP15.04■□□□□ -0
VIPAS39-206ENST00000553888 MYH2Q9UKX2 1941 aa15.04■□□□□ -0
VIPAS39-206ENST00000553888 MMP10P09238 476 aa15.03■□□□□ -0
VIPAS39-206ENST00000553888 RXRAP19793 462 aa15.03■□□□□ -0
VIPAS39-206ENST00000553888 EN1Q05925 392 aaPredicted RBP15.03■□□□□ -0
VIPAS39-206ENST00000553888 EZH2Q15910 746 aaKnown RBP15.03■□□□□ -0
VIPAS39-206ENST00000553888 COL11A2P13942 1736 aaPredicted RBP15.03■□□□□ -0
VIPAS39-206ENST00000553888 KLF18A0A0U1RQI7 1052 aa15.03■□□□□ -0
VIPAS39-206ENST00000553888 RRP12Q5JTH9 1297 aaKnown RBP15.03■□□□□ -0
VIPAS39-206ENST00000553888 NSUN7Q8NE18 718 aaKnown RBP15.03■□□□□ -0
VIPAS39-206ENST00000553888 AATFQ9NY61 560 aaKnown RBP eCLIP15.03■□□□□ -0
VIPAS39-206ENST00000553888 CAVIN1Q6NZI2 390 aaKnown RBP15.03■□□□□ -0
VIPAS39-206ENST00000553888 POLLQ9UGP5 575 aa15.03■□□□□ -0
VIPAS39-206ENST00000553888 MINDY4BA8MYZ0 360 aa15.02■□□□□ -0
VIPAS39-206ENST00000553888 DNM1Q05193 864 aaKnown RBP15.02■□□□□ -0
VIPAS39-206ENST00000553888 ALX1Q15699 326 aa15.02■□□□□ -0
VIPAS39-206ENST00000553888 SLC4A8Q2Y0W8 1093 aa15.02■□□□□ -0
VIPAS39-206ENST00000553888 USP48Q86UV5 1035 aa15.02■□□□□ -0
VIPAS39-206ENST00000553888 ZKSCAN3Q9BRR0 538 aa15.02■□□□□ -0
VIPAS39-206ENST00000553888 PTPDC1A2A3K4 754 aa15.02□□□□□ -0.01
VIPAS39-206ENST00000553888 TRDNQ13061 729 aa15.02□□□□□ -0.01
VIPAS39-206ENST00000553888 KLHL40Q2TBA0 621 aa15.02□□□□□ -0.01
VIPAS39-206ENST00000553888 TOMM22Q9NS69 142 aa15.02□□□□□ -0.01
VIPAS39-206ENST00000553888 HPS5Q9UPZ3 1129 aa15.02□□□□□ -0.01
VIPAS39-206ENST00000553888 FIBPO43427 364 aa15.01□□□□□ -0.01
VIPAS39-206ENST00000553888 KDM4AO75164 1064 aa15.01□□□□□ -0.01
VIPAS39-206ENST00000553888 SKOR2Q2VWA4 1001 aaPredicted RBP15.01□□□□□ -0.01
VIPAS39-206ENST00000553888 LEMD3Q9Y2U8 911 aa15.01□□□□□ -0.01
VIPAS39-206ENST00000553888 NRXN2Q9P2S2 1712 aa15.01□□□□□ -0.01
VIPAS39-206ENST00000553888 GOLGA8BA8MQT2 603 aa15.01□□□□□ -0.01
VIPAS39-206ENST00000553888 SEMA3EO15041 775 aa15.01□□□□□ -0.01
VIPAS39-206ENST00000553888 GAS2L3Q86XJ1 694 aa15.01□□□□□ -0.01
VIPAS39-206ENST00000553888 CCDC144CPQ8IYA2 1237 aa15.01□□□□□ -0.01
VIPAS39-206ENST00000553888 MYL10Q9BUA6 226 aa15.01□□□□□ -0.01
VIPAS39-206ENST00000553888 ZSWIM5Q9P217 1185 aa15.01□□□□□ -0.01
VIPAS39-206ENST00000553888 TIAM2Q8IVF5 1701 aa15□□□□□ -0.01
VIPAS39-206ENST00000553888 DIXDC1Q155Q3 683 aa15□□□□□ -0.01
VIPAS39-206ENST00000553888 NLGN1Q8N2Q7 840 aa15□□□□□ -0.01
VIPAS39-206ENST00000553888 PDGFDQ9GZP0 370 aaPredicted RBP15□□□□□ -0.01
VIPAS39-206ENST00000553888 GUCY1B3Q02153 619 aa15□□□□□ -0.01
VIPAS39-206ENST00000553888 SMARCC2Q8TAQ2 1214 aa15□□□□□ -0.01
VIPAS39-206ENST00000553888 ZNF274Q96GC6 653 aaPredicted RBP15□□□□□ -0.01
VIPAS39-206ENST00000553888 GGA1Q9UJY5 639 aa15□□□□□ -0.01
VIPAS39-206ENST00000553888 GNAT2P19087 354 aa14.99□□□□□ -0.01
VIPAS39-206ENST00000553888 HOXA10P31260 410 aaPredicted RBP14.99□□□□□ -0.01
VIPAS39-206ENST00000553888 AKNAD1Q5T1N1 836 aa14.99□□□□□ -0.01
VIPAS39-206ENST00000553888 TDRD7Q8NHU6 1098 aaKnown RBP14.99□□□□□ -0.01
VIPAS39-206ENST00000553888 NACAP1Q9BZK3 213 aa14.99□□□□□ -0.01
VIPAS39-206ENST00000553888 MAST2Q6P0Q8 1798 aa14.99□□□□□ -0.01
VIPAS39-206ENST00000553888 LTBP1Q14766 1721 aa14.99□□□□□ -0.01
VIPAS39-206ENST00000553888 KLRG2A4D1S0 409 aaPredicted RBP14.99□□□□□ -0.01
VIPAS39-206ENST00000553888 C6orf229H3BNL8 230 aa14.99□□□□□ -0.01
VIPAS39-206ENST00000553888 SH2B2O14492 632 aaPredicted RBP14.99□□□□□ -0.01
VIPAS39-206ENST00000553888 PPEF1O14829 653 aaPredicted RBP14.99□□□□□ -0.01
VIPAS39-206ENST00000553888 RIMBP2O15034 1052 aa14.99□□□□□ -0.01
VIPAS39-206ENST00000553888 PPARAQ07869 468 aa14.99□□□□□ -0.01
VIPAS39-206ENST00000553888 TBC1D16Q8TBP0 767 aa14.99□□□□□ -0.01
VIPAS39-206ENST00000553888 ZMYM6O95789 1325 aa14.99□□□□□ -0.01
VIPAS39-206ENST00000553888 PTMSP20962 102 aa14.99□□□□□ -0.01
VIPAS39-206ENST00000553888 MFSD6Q6ZSS7 791 aa14.99□□□□□ -0.01
VIPAS39-206ENST00000553888 FAM184AQ8NB25 1140 aa14.99□□□□□ -0.01
VIPAS39-206ENST00000553888 LRRC37AA6NMS7 1700 aa14.98□□□□□ -0.01
VIPAS39-206ENST00000553888 PRDM1O75626 825 aa14.98□□□□□ -0.01
VIPAS39-206ENST00000553888 SRGNP10124 158 aa14.98□□□□□ -0.01
VIPAS39-206ENST00000553888 FDPSP14324 419 aaKnown RBP14.98□□□□□ -0.01
VIPAS39-206ENST00000553888 EVCP57679 992 aa14.98□□□□□ -0.01
VIPAS39-206ENST00000553888 ZNF804AQ7Z570 1209 aa14.98□□□□□ -0.01
VIPAS39-206ENST00000553888 DZIP1Q86YF9 867 aaKnown RBP14.98□□□□□ -0.01
VIPAS39-206ENST00000553888 IGDCC4Q8TDY8 1250 aa14.98□□□□□ -0.01
VIPAS39-206ENST00000553888 CD209Q9NNX6 404 aa14.98□□□□□ -0.01
VIPAS39-206ENST00000553888 GJB4Q9NTQ9 266 aa14.98□□□□□ -0.01
VIPAS39-206ENST00000553888 TMEM63CQ9P1W3 806 aa14.98□□□□□ -0.01
VIPAS39-206ENST00000553888 BBOX1O75936 387 aa14.98□□□□□ -0.01
VIPAS39-206ENST00000553888 CYP2D6P10635 497 aa14.98□□□□□ -0.01
VIPAS39-206ENST00000553888 OTUD7BQ6GQQ9 843 aa14.98□□□□□ -0.01
VIPAS39-206ENST00000553888 FBXL16Q8N461 479 aa14.98□□□□□ -0.01
VIPAS39-206ENST00000553888 CRAMP1Q96RY5 1269 aa14.98□□□□□ -0.01
VIPAS39-206ENST00000553888 BRIP1Q9BX63 1249 aa14.98□□□□□ -0.01
VIPAS39-206ENST00000553888 ANGEL1Q9UNK9 670 aaKnown RBP14.98□□□□□ -0.01
VIPAS39-206ENST00000553888 PARP3Q9Y6F1 533 aa14.98□□□□□ -0.01
VIPAS39-206ENST00000553888 SALL1Q9NSC2 1324 aa14.97□□□□□ -0.01
VIPAS39-206ENST00000553888 MICU3Q86XE3 530 aa14.97□□□□□ -0.01
VIPAS39-206ENST00000553888 LY9Q9HBG7 655 aa14.97□□□□□ -0.01
VIPAS39-206ENST00000553888 TFIP11Q9UBB9 837 aaKnown RBP14.97□□□□□ -0.01
VIPAS39-206ENST00000553888 TMEM67Q5HYA8 995 aa14.97□□□□□ -0.01
VIPAS39-206ENST00000553888 STAG1Q8WVM7 1258 aa14.97□□□□□ -0.01
VIPAS39-206ENST00000553888 CNKSR2Q8WXI2 1034 aa14.97□□□□□ -0.01
VIPAS39-206ENST00000553888 ZNF219Q9P2Y4 722 aaPredicted RBP14.97□□□□□ -0.01
VIPAS39-206ENST00000553888 ECM29Q5VYK3 1845 aa14.97□□□□□ -0.01
VIPAS39-206ENST00000553888 PDS5AQ29RF7 1337 aaKnown RBP14.97□□□□□ -0.01
VIPAS39-206ENST00000553888 PDCP20941 246 aa14.96□□□□□ -0.01
VIPAS39-206ENST00000553888 ATP2B4P23634 1241 aa14.96□□□□□ -0.01
VIPAS39-206ENST00000553888 ADD1P35611 737 aaKnown RBP14.96□□□□□ -0.01
VIPAS39-206ENST00000553888 MYH15Q9Y2K3 1946 aa14.96□□□□□ -0.01
VIPAS39-206ENST00000553888 FSD2A1L4K1 749 aa14.96□□□□□ -0.01
VIPAS39-206ENST00000553888 USP17L12C9JPN9 530 aa14.96□□□□□ -0.01
VIPAS39-206ENST00000553888 USP17L21D6R901 530 aa14.96□□□□□ -0.01
VIPAS39-206ENST00000553888 UBE2Q2LH0YL09 131 aa14.96□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms