RNA–Protein interactions for RNA: ENST00000553691.5

VIPAS39-205, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

TSL 5

Gene VIPAS39, Length 806 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-205ENST00000553691 GRM1Q13255 1194 aa8.43□□□□□ -1.06
VIPAS39-205ENST00000553691 HLFQ16534 295 aa8.43□□□□□ -1.06
VIPAS39-205ENST00000553691 KRT24Q2M2I5 525 aa8.43□□□□□ -1.06
VIPAS39-205ENST00000553691 LCE2AQ5TA79 106 aaPredicted RBP8.43□□□□□ -1.06
VIPAS39-205ENST00000553691 PRR5LQ6MZQ0 368 aa8.43□□□□□ -1.06
VIPAS39-205ENST00000553691 BABAM1Q9NWV8 329 aa8.43□□□□□ -1.06
VIPAS39-205ENST00000553691 COG6Q9Y2V7 657 aa8.43□□□□□ -1.06
VIPAS39-205ENST00000553691 PASKQ96RG2 1323 aa8.43□□□□□ -1.06
VIPAS39-205ENST00000553691 SLX4Q8IY92 1834 aa8.43□□□□□ -1.06
VIPAS39-205ENST00000553691 CACNA1SQ13698 1873 aa8.43□□□□□ -1.06
VIPAS39-205ENST00000553691 FER1L6Q2WGJ9 1857 aa8.43□□□□□ -1.06
VIPAS39-205ENST00000553691 DDNO94850 711 aaPredicted RBP8.42□□□□□ -1.06
VIPAS39-205ENST00000553691 ZNF853P0CG23 659 aa8.42□□□□□ -1.06
VIPAS39-205ENST00000553691 TMEM132AQ24JP5 1023 aa8.42□□□□□ -1.06
VIPAS39-205ENST00000553691 PROSER3Q2NL68 480 aa8.42□□□□□ -1.06
VIPAS39-205ENST00000553691 CLEC4GQ6UXB4 293 aa8.42□□□□□ -1.06
VIPAS39-205ENST00000553691 BICDL1Q6ZP65 573 aa8.42□□□□□ -1.06
VIPAS39-205ENST00000553691 TTLL7Q6ZT98 887 aa8.42□□□□□ -1.06
VIPAS39-205ENST00000553691 C2CD5Q86YS7 1000 aa8.42□□□□□ -1.06
VIPAS39-205ENST00000553691 KDF1Q8NAX2 398 aaPredicted RBP8.42□□□□□ -1.06
VIPAS39-205ENST00000553691 MCOLN1Q9GZU1 580 aa8.42□□□□□ -1.06
VIPAS39-205ENST00000553691 CEP126Q9P2H0 1117 aa8.42□□□□□ -1.06
VIPAS39-205ENST00000553691 TSPYL4Q9UJ04 414 aa8.42□□□□□ -1.06
VIPAS39-205ENST00000553691 ANKRD36CQ5JPF3 1778 aa8.42□□□□□ -1.06
VIPAS39-205ENST00000553691 UBN2Q6ZU65 1347 aa8.41□□□□□ -1.06
VIPAS39-205ENST00000553691 NFKBIEO00221 500 aa8.41□□□□□ -1.06
VIPAS39-205ENST00000553691 NEFMP07197 916 aa8.41□□□□□ -1.06
VIPAS39-205ENST00000553691 PTGIRP43119 386 aa8.41□□□□□ -1.06
VIPAS39-205ENST00000553691 DGKZQ13574 1117 aa8.41□□□□□ -1.06
VIPAS39-205ENST00000553691 TSGA10IPQ3SY00 556 aa8.41□□□□□ -1.06
VIPAS39-205ENST00000553691 CCDC85AQ96PX6 553 aaPredicted RBP8.41□□□□□ -1.06
VIPAS39-205ENST00000553691 SNED1Q8TER0 1413 aa8.4□□□□□ -1.06
VIPAS39-205ENST00000553691 ABCC12Q96J65 1359 aa8.4□□□□□ -1.06
VIPAS39-205ENST00000553691 ERBB4Q15303 1308 aa8.4□□□□□ -1.06
VIPAS39-205ENST00000553691 MAP3K15Q6ZN16 1313 aa8.4□□□□□ -1.06
VIPAS39-205ENST00000553691 KLRG2A4D1S0 409 aaPredicted RBP8.4□□□□□ -1.06
VIPAS39-205ENST00000553691 APAF1O14727 1248 aa8.4□□□□□ -1.06
VIPAS39-205ENST00000553691 CA12O43570 354 aa8.4□□□□□ -1.06
VIPAS39-205ENST00000553691 MCCD1P59942 119 aaPredicted RBP8.4□□□□□ -1.06
VIPAS39-205ENST00000553691 LMOD3Q0VAK6 560 aa8.4□□□□□ -1.06
VIPAS39-205ENST00000553691 WDR43Q15061 677 aaKnown RBP eCLIP8.4□□□□□ -1.06
VIPAS39-205ENST00000553691 RNF20Q5VTR2 975 aa8.4□□□□□ -1.06
VIPAS39-205ENST00000553691 PNMA8AQ86V59 439 aaPredicted RBP8.4□□□□□ -1.06
VIPAS39-205ENST00000553691 ZNF622Q969S3 477 aaKnown RBP eCLIP8.4□□□□□ -1.06
VIPAS39-205ENST00000553691 CAPNS2Q96L46 248 aa8.4□□□□□ -1.06
VIPAS39-205ENST00000553691 YTHDC1Q96MU7 727 aaKnown RBP8.4□□□□□ -1.06
VIPAS39-205ENST00000553691 GPR101Q96P66 508 aaPredicted RBP8.4□□□□□ -1.06
VIPAS39-205ENST00000553691 BRIP1Q9BX63 1249 aa8.4□□□□□ -1.06
VIPAS39-205ENST00000553691 TAOK3Q9H2K8 898 aa8.4□□□□□ -1.06
VIPAS39-205ENST00000553691 TAF1DQ9H5J8 278 aaPredicted RBP8.4□□□□□ -1.06
VIPAS39-205ENST00000553691 RIC1Q4ADV7 1423 aa8.39□□□□□ -1.07
VIPAS39-205ENST00000553691 ERVV-1B6SEH8 477 aa8.39□□□□□ -1.07
VIPAS39-205ENST00000553691 DLL1O00548 723 aa8.39□□□□□ -1.07
VIPAS39-205ENST00000553691 C21orf2O43822 256 aa8.39□□□□□ -1.07
VIPAS39-205ENST00000553691 ANXA1P04083 346 aa8.39□□□□□ -1.07
VIPAS39-205ENST00000553691 CC2D2BQ6DHV5 1058 aa8.39□□□□□ -1.07
VIPAS39-205ENST00000553691 CNTROBQ8N137 903 aa8.39□□□□□ -1.07
VIPAS39-205ENST00000553691 GCC1Q96CN9 775 aa8.39□□□□□ -1.07
VIPAS39-205ENST00000553691 SETDB2Q96T68 719 aa8.39□□□□□ -1.07
VIPAS39-205ENST00000553691 HACL1Q9UJ83 578 aa8.39□□□□□ -1.07
VIPAS39-205ENST00000553691 LAMB2P55268 1798 aa8.39□□□□□ -1.07
VIPAS39-205ENST00000553691 TRPM7Q96QT4 1865 aa8.38□□□□□ -1.07
VIPAS39-205ENST00000553691 SCN4AP35499 1836 aa8.38□□□□□ -1.07
VIPAS39-205ENST00000553691 IBTKQ9P2D0 1353 aaPredicted RBP8.38□□□□□ -1.07
VIPAS39-205ENST00000553691 ATP5J2-PTCD1G3V325 749 aa8.38□□□□□ -1.07
VIPAS39-205ENST00000553691 MEN1O00255 615 aa8.38□□□□□ -1.07
VIPAS39-205ENST00000553691 ANP32CO43423 234 aa8.38□□□□□ -1.07
VIPAS39-205ENST00000553691 SRGNP10124 158 aa8.38□□□□□ -1.07
VIPAS39-205ENST00000553691 MYL6BP14649 208 aa8.38□□□□□ -1.07
VIPAS39-205ENST00000553691 ERVK-9P63128 1117 aa8.38□□□□□ -1.07
VIPAS39-205ENST00000553691 SOGA3Q5TF21 947 aa8.38□□□□□ -1.07
VIPAS39-205ENST00000553691 ZNF34Q8IZ26 560 aa8.38□□□□□ -1.07
VIPAS39-205ENST00000553691 CNBD1Q8NA66 436 aa8.38□□□□□ -1.07
VIPAS39-205ENST00000553691 C7orf43Q8WVR3 580 aa8.38□□□□□ -1.07
VIPAS39-205ENST00000553691 ZNF592Q92610 1267 aa8.38□□□□□ -1.07
VIPAS39-205ENST00000553691 MBIPQ9NS73 344 aa8.38□□□□□ -1.07
VIPAS39-205ENST00000553691 NIP7Q9Y221 180 aaKnown RBP eCLIP8.38□□□□□ -1.07
VIPAS39-205ENST00000553691 DDX60Q8IY21 1712 aaKnown RBP8.37□□□□□ -1.07
VIPAS39-205ENST00000553691 H3BM21 787 aa8.37□□□□□ -1.07
VIPAS39-205ENST00000553691 NPHP1O15259 732 aa8.37□□□□□ -1.07
VIPAS39-205ENST00000553691 NTSR2O95665 410 aa8.37□□□□□ -1.07
VIPAS39-205ENST00000553691 EPHX2P34913 555 aa8.37□□□□□ -1.07
VIPAS39-205ENST00000553691 MAP2K2P36507 400 aa8.37□□□□□ -1.07
VIPAS39-205ENST00000553691 SOX10P56693 466 aa8.37□□□□□ -1.07
VIPAS39-205ENST00000553691 PTSQ03393 145 aa8.37□□□□□ -1.07
VIPAS39-205ENST00000553691 ZNF800Q2TB10 664 aaPredicted RBP eCLIP8.37□□□□□ -1.07
VIPAS39-205ENST00000553691 SLFNL1Q499Z3 407 aa8.37□□□□□ -1.07
VIPAS39-205ENST00000553691 FOXD4L5Q5VV16 416 aaPredicted RBP8.37□□□□□ -1.07
VIPAS39-205ENST00000553691 MAP1SQ66K74 1059 aaPredicted RBP8.37□□□□□ -1.07
VIPAS39-205ENST00000553691 SLC51AQ86UW1 340 aa8.37□□□□□ -1.07
VIPAS39-205ENST00000553691 NGEFQ8N5V2 710 aa8.37□□□□□ -1.07
VIPAS39-205ENST00000553691 RNF217Q8TC41 542 aa8.37□□□□□ -1.07
VIPAS39-205ENST00000553691 ZNF652Q9Y2D9 606 aa8.37□□□□□ -1.07
VIPAS39-205ENST00000553691 COL4A1P02462 1669 aa8.37□□□□□ -1.07
VIPAS39-205ENST00000553691 HOXB7P09629 217 aa8.36□□□□□ -1.07
VIPAS39-205ENST00000553691 EIF2S2P20042 333 aaKnown RBP8.36□□□□□ -1.07
VIPAS39-205ENST00000553691 PDE6BP35913 854 aa8.36□□□□□ -1.07
VIPAS39-205ENST00000553691 WASHC4Q2M389 1173 aa8.36□□□□□ -1.07
VIPAS39-205ENST00000553691 CRY2Q49AN0 593 aa8.36□□□□□ -1.07
VIPAS39-205ENST00000553691 SUSD4Q5VX71 490 aa8.36□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms