RNA–Protein interactions for RNA: ENST00000552008.5

LIMA1-209, Transcript of LIM domain and actin binding 1, humanhuman

TSL 5

Gene LIMA1, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-209ENST00000552008 U3KQE9 123 aa4.06□□□□□ -1.76
LIMA1-209ENST00000552008 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP4.05□□□□□ -1.76
LIMA1-209ENST00000552008 TMEM265A0A087WTH1 108 aa4.05□□□□□ -1.76
LIMA1-209ENST00000552008 TCAF2A6NFQ2 919 aa4.05□□□□□ -1.76
LIMA1-209ENST00000552008 NUAK1O60285 661 aa4.05□□□□□ -1.76
LIMA1-209ENST00000552008 ESRRAP11474 423 aaPredicted RBP4.05□□□□□ -1.76
LIMA1-209ENST00000552008 SYN1P17600 705 aa4.05□□□□□ -1.76
LIMA1-209ENST00000552008 ZAP70P43403 619 aa4.05□□□□□ -1.76
LIMA1-209ENST00000552008 KRTAP10-2P60368 255 aa4.05□□□□□ -1.76
LIMA1-209ENST00000552008 PDE12Q6L8Q7 609 aaKnown RBP4.05□□□□□ -1.76
LIMA1-209ENST00000552008 ATG14Q6ZNE5 492 aa4.05□□□□□ -1.76
LIMA1-209ENST00000552008 ARHGAP27Q6ZUM4 889 aa4.05□□□□□ -1.76
LIMA1-209ENST00000552008 NXPE3Q969Y0 559 aa4.05□□□□□ -1.76
LIMA1-209ENST00000552008 DIRC2Q96SL1 478 aa4.05□□□□□ -1.76
LIMA1-209ENST00000552008 NRSN2Q9GZP1 204 aa4.05□□□□□ -1.76
LIMA1-209ENST00000552008 SAP130Q9H0E3 1048 aa4.05□□□□□ -1.76
LIMA1-209ENST00000552008 TMPRSS5Q9H3S3 457 aa4.05□□□□□ -1.76
LIMA1-209ENST00000552008 CNTN3Q9P232 1028 aa4.05□□□□□ -1.76
LIMA1-209ENST00000552008 MAFBQ9Y5Q3 323 aaPredicted RBP4.05□□□□□ -1.76
LIMA1-209ENST00000552008 A0A0G2JLL6 359 aaPredicted RBP4.04□□□□□ -1.76
LIMA1-209ENST00000552008 EIF4EBP3O60516 100 aaPredicted RBP4.04□□□□□ -1.76
LIMA1-209ENST00000552008 CEACAM5P06731 702 aa4.04□□□□□ -1.76
LIMA1-209ENST00000552008 CES1P23141 567 aa4.04□□□□□ -1.76
LIMA1-209ENST00000552008 CDK5R2Q13319 367 aa4.04□□□□□ -1.76
LIMA1-209ENST00000552008 FKBP5Q13451 457 aaPredicted RBP4.04□□□□□ -1.76
LIMA1-209ENST00000552008 CDCA8Q53HL2 280 aa4.04□□□□□ -1.76
LIMA1-209ENST00000552008 TMEM67Q5HYA8 995 aa4.04□□□□□ -1.76
LIMA1-209ENST00000552008 HP1BP3Q5SSJ5 553 aaPredicted RBP4.04□□□□□ -1.76
LIMA1-209ENST00000552008 C16orf46Q6P387 395 aa4.04□□□□□ -1.76
LIMA1-209ENST00000552008 ZNF438Q7Z4V0 828 aa4.04□□□□□ -1.76
LIMA1-209ENST00000552008 KIRREL1Q96J84 757 aa4.04□□□□□ -1.76
LIMA1-209ENST00000552008 GSX1Q9H4S2 264 aaPredicted RBP4.04□□□□□ -1.76
LIMA1-209ENST00000552008 NSUN3Q9H649 340 aaKnown RBP4.04□□□□□ -1.76
LIMA1-209ENST00000552008 VRTNQ9H8Y1 702 aa4.04□□□□□ -1.76
LIMA1-209ENST00000552008 MKNK2Q9HBH9 465 aa4.04□□□□□ -1.76
LIMA1-209ENST00000552008 RAD18Q9NS91 495 aa4.04□□□□□ -1.76
LIMA1-209ENST00000552008 PITPNM2Q9BZ72 1349 aa4.03□□□□□ -1.76
LIMA1-209ENST00000552008 FAM196BA6NMK8 535 aa4.03□□□□□ -1.76
LIMA1-209ENST00000552008 TNFRSF10BO14763 440 aa4.03□□□□□ -1.76
LIMA1-209ENST00000552008 MED14OSP0DP75 135 aa4.03□□□□□ -1.76
LIMA1-209ENST00000552008 MAOBP27338 520 aa4.03□□□□□ -1.76
LIMA1-209ENST00000552008 ZP2Q05996 745 aa4.03□□□□□ -1.76
LIMA1-209ENST00000552008 CFAP70Q5T0N1 1121 aa4.03□□□□□ -1.76
LIMA1-209ENST00000552008 C1orf127Q8N9H9 656 aa4.03□□□□□ -1.76
LIMA1-209ENST00000552008 OSMRQ99650 979 aa4.03□□□□□ -1.76
LIMA1-209ENST00000552008 ZCCHC4Q9H5U6 513 aa4.03□□□□□ -1.76
LIMA1-209ENST00000552008 PLAGL2Q9UPG8 496 aa4.03□□□□□ -1.76
LIMA1-209ENST00000552008 ZBTB7CA1YPR0 619 aa4.02□□□□□ -1.77
LIMA1-209ENST00000552008 CTSBP07858 339 aa4.02□□□□□ -1.77
LIMA1-209ENST00000552008 OXCT1P55809 520 aa4.02□□□□□ -1.77
LIMA1-209ENST00000552008 LINC00310P59036 64 aa4.02□□□□□ -1.77
LIMA1-209ENST00000552008 IKZF1Q13422 519 aa4.02□□□□□ -1.77
LIMA1-209ENST00000552008 KANK4Q5T7N3 995 aaPredicted RBP4.02□□□□□ -1.77
LIMA1-209ENST00000552008 ASAP3Q8TDY4 903 aa4.02□□□□□ -1.77
LIMA1-209ENST00000552008 SMG5Q9UPR3 1016 aaKnown RBP4.02□□□□□ -1.77
LIMA1-209ENST00000552008 ITIH2P19823 946 aa4.01□□□□□ -1.77
LIMA1-209ENST00000552008 NFIXQ14938 502 aa4.01□□□□□ -1.77
LIMA1-209ENST00000552008 CYFIP1Q7L576 1253 aa4.01□□□□□ -1.77
LIMA1-209ENST00000552008 PRRT2Q7Z6L0 340 aaPredicted RBP4.01□□□□□ -1.77
LIMA1-209ENST00000552008 AEBP1Q8IUX7 1158 aa4.01□□□□□ -1.77
LIMA1-209ENST00000552008 RETREG2Q8NC44 543 aa4.01□□□□□ -1.77
LIMA1-209ENST00000552008 BORCS6Q96GS4 357 aa4.01□□□□□ -1.77
LIMA1-209ENST00000552008 ZKSCAN3Q9BRR0 538 aa4.01□□□□□ -1.77
LIMA1-209ENST00000552008 IRF2BPLQ9H1B7 796 aa4.01□□□□□ -1.77
LIMA1-209ENST00000552008 KCNK12Q9HB15 430 aa4.01□□□□□ -1.77
LIMA1-209ENST00000552008 ETV2O00321 342 aaPredicted RBP4□□□□□ -1.77
LIMA1-209ENST00000552008 CYP11A1P05108 521 aa4□□□□□ -1.77
LIMA1-209ENST00000552008 BMP7P18075 431 aa4□□□□□ -1.77
LIMA1-209ENST00000552008 GLDCP23378 1020 aa4□□□□□ -1.77
LIMA1-209ENST00000552008 NFKB2Q00653 900 aa4□□□□□ -1.77
LIMA1-209ENST00000552008 POU4F3Q15319 338 aa4□□□□□ -1.77
LIMA1-209ENST00000552008 ASB11Q8WXH4 323 aa4□□□□□ -1.77
LIMA1-209ENST00000552008 NUDT16Q96DE0 195 aaKnown RBP4□□□□□ -1.77
LIMA1-209ENST00000552008 TNKS2Q9H2K2 1166 aa4□□□□□ -1.77
LIMA1-209ENST00000552008 EPB41L4BQ9H329 900 aa4□□□□□ -1.77
LIMA1-209ENST00000552008 ZFYVE1Q9HBF4 777 aa4□□□□□ -1.77
LIMA1-209ENST00000552008 DCP1AQ9NPI6 582 aaPredicted RBP4□□□□□ -1.77
LIMA1-209ENST00000552008 SNX11Q9Y5W9 270 aa4□□□□□ -1.77
LIMA1-209ENST00000552008 LEFTY1O75610 366 aa3.99□□□□□ -1.77
LIMA1-209ENST00000552008 ATG7O95352 703 aa3.99□□□□□ -1.77
LIMA1-209ENST00000552008 PRIMPOLQ96LW4 560 aa3.99□□□□□ -1.77
LIMA1-209ENST00000552008 BHLHE41Q9C0J9 482 aaPredicted RBP3.99□□□□□ -1.77
LIMA1-209ENST00000552008 NOVA2Q9UNW9 492 aaKnown RBP3.99□□□□□ -1.77
LIMA1-209ENST00000552008 USTQ9Y2C2 406 aa3.99□□□□□ -1.77
LIMA1-209ENST00000552008 ZBTB39O15060 712 aa3.98□□□□□ -1.77
LIMA1-209ENST00000552008 SKOR2Q2VWA4 1001 aaPredicted RBP3.98□□□□□ -1.77
LIMA1-209ENST00000552008 FAM200AQ8TCP9 573 aa3.98□□□□□ -1.77
LIMA1-209ENST00000552008 PMEPA1Q969W9 287 aa3.98□□□□□ -1.77
LIMA1-209ENST00000552008 TRAIPQ9BWF2 469 aa3.98□□□□□ -1.77
LIMA1-209ENST00000552008 CNTNAP4Q9C0A0 1308 aa3.97□□□□□ -1.77
LIMA1-209ENST00000552008 AOC2O75106 756 aa3.97□□□□□ -1.77
LIMA1-209ENST00000552008 ADRB1P08588 477 aa3.97□□□□□ -1.77
LIMA1-209ENST00000552008 B4GALNT3Q6L9W6 998 aa3.97□□□□□ -1.77
LIMA1-209ENST00000552008 XKR5Q6UX68 686 aa3.97□□□□□ -1.77
LIMA1-209ENST00000552008 ABTB2Q8N961 1025 aa3.97□□□□□ -1.77
LIMA1-209ENST00000552008 CXorf38Q8TB03 319 aa3.97□□□□□ -1.77
LIMA1-209ENST00000552008 KCNC2Q96PR1 638 aa3.97□□□□□ -1.77
LIMA1-209ENST00000552008 CORO1BQ9BR76 489 aa3.97□□□□□ -1.77
LIMA1-209ENST00000552008 DUSP23Q9BVJ7 150 aa3.97□□□□□ -1.77
LIMA1-209ENST00000552008 CHRDQ9H2X0 955 aa3.97□□□□□ -1.77
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms