RNA–Protein interactions for RNA: ENST00000549578.5

VPS29-206, Transcript of VPS29, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS29, Length 1,523 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-206ENST00000549578 TDRD3Q9H7E2 651 aaKnown RBP25.58■■□□□ 1.69
VPS29-206ENST00000549578 AATFQ9NY61 560 aaKnown RBP eCLIP25.58■■□□□ 1.69
VPS29-206ENST00000549578 RFX7Q2KHR2 1363 aa25.58■■□□□ 1.69
VPS29-206ENST00000549578 POTEIP0CG38 1075 aa25.58■■□□□ 1.68
VPS29-206ENST00000549578 POTEJP0CG39 1038 aa25.58■■□□□ 1.68
VPS29-206ENST00000549578 PNMA8AQ86V59 439 aaPredicted RBP25.58■■□□□ 1.68
VPS29-206ENST00000549578 CLRN2A0PK11 232 aa25.57■■□□□ 1.68
VPS29-206ENST00000549578 DYNLL1P63167 89 aaKnown RBP25.57■■□□□ 1.68
VPS29-206ENST00000549578 APPBP2Q92624 585 aa25.57■■□□□ 1.68
VPS29-206ENST00000549578 NOL10Q9BSC4 688 aaKnown RBP25.57■■□□□ 1.68
VPS29-206ENST00000549578 CDC42EP5Q6NZY7 148 aa25.56■■□□□ 1.68
VPS29-206ENST00000549578 OSBP2Q969R2 916 aa25.56■■□□□ 1.68
VPS29-206ENST00000549578 PUS7LQ9H0K6 701 aaKnown RBP25.56■■□□□ 1.68
VPS29-206ENST00000549578 BAG3O95817 575 aa25.55■■□□□ 1.68
VPS29-206ENST00000549578 ZMYM1Q5SVZ6 1142 aa25.55■■□□□ 1.68
VPS29-206ENST00000549578 FAM227BQ96M60 508 aa25.55■■□□□ 1.68
VPS29-206ENST00000549578 SEC62Q99442 399 aaKnown RBP25.55■■□□□ 1.68
VPS29-206ENST00000549578 USP40Q9NVE5 1235 aa25.55■■□□□ 1.68
VPS29-206ENST00000549578 ECM29Q5VYK3 1845 aa25.55■■□□□ 1.68
VPS29-206ENST00000549578 MAGEB6P1A0A0J9YX57 407 aa25.54■■□□□ 1.68
VPS29-206ENST00000549578 MYO1BO43795 1136 aa25.54■■□□□ 1.68
VPS29-206ENST00000549578 CACNB3P54284 484 aa25.54■■□□□ 1.68
VPS29-206ENST00000549578 RHBDL3P58872 404 aa25.54■■□□□ 1.68
VPS29-206ENST00000549578 NMIQ13287 307 aaPredicted RBP25.54■■□□□ 1.68
VPS29-206ENST00000549578 TICAM2Q86XR7 235 aa25.54■■□□□ 1.68
VPS29-206ENST00000549578 SH3RF3Q8TEJ3 882 aaPredicted RBP25.54■■□□□ 1.68
VPS29-206ENST00000549578 RIOK1Q9BRS2 568 aaKnown RBP25.54■■□□□ 1.68
VPS29-206ENST00000549578 DIAPH3Q9NSV4 1193 aa25.54■■□□□ 1.68
VPS29-206ENST00000549578 GGA3Q9NZ52 723 aa25.54■■□□□ 1.68
VPS29-206ENST00000549578 ZNF70Q9UC06 446 aaPredicted RBP25.54■■□□□ 1.68
VPS29-206ENST00000549578 A0A0D9SFI3 127 aa25.53■■□□□ 1.68
VPS29-206ENST00000549578 M0R2C6 588 aa25.53■■□□□ 1.68
VPS29-206ENST00000549578 MBD4O95243 580 aa25.53■■□□□ 1.68
VPS29-206ENST00000549578 PPP4CP60510 307 aa25.53■■□□□ 1.68
VPS29-206ENST00000549578 SPDYE2Q495Y8 402 aa25.53■■□□□ 1.68
VPS29-206ENST00000549578 ANGEL2Q5VTE6 544 aaKnown RBP25.53■■□□□ 1.68
VPS29-206ENST00000549578 VEZTQ9HBM0 779 aa25.53■■□□□ 1.68
VPS29-206ENST00000549578 SCAF8Q9UPN6 1271 aaKnown RBP25.53■■□□□ 1.68
VPS29-206ENST00000549578 KIF3CO14782 793 aa25.53■■□□□ 1.68
VPS29-206ENST00000549578 LCORLQ8N3X6 602 aa25.53■■□□□ 1.68
VPS29-206ENST00000549578 ARMT1Q9H993 441 aa25.53■■□□□ 1.68
VPS29-206ENST00000549578 CLEC11AQ9Y240 323 aa25.53■■□□□ 1.68
VPS29-206ENST00000549578 HIP1O00291 1037 aa25.52■■□□□ 1.68
VPS29-206ENST00000549578 CWC27Q6UX04 472 aaKnown RBP25.52■■□□□ 1.68
VPS29-206ENST00000549578 AIDAQ96BJ3 306 aa25.52■■□□□ 1.68
VPS29-206ENST00000549578 CHMLP26374 656 aa25.51■■□□□ 1.67
VPS29-206ENST00000549578 PLCG2P16885 1265 aa25.5■■□□□ 1.67
VPS29-206ENST00000549578 CCDC129Q6ZRS4 1044 aa25.5■■□□□ 1.67
VPS29-206ENST00000549578 LDHDQ86WU2 507 aa25.5■■□□□ 1.67
VPS29-206ENST00000549578 TEX11Q8IYF3 940 aa25.5■■□□□ 1.67
VPS29-206ENST00000549578 ZC3H15Q8WU90 426 aaKnown RBP25.5■■□□□ 1.67
VPS29-206ENST00000549578 TMOD2Q9NZR1 351 aa25.5■■□□□ 1.67
VPS29-206ENST00000549578 TCP10L2B9ZVM9 353 aa25.49■■□□□ 1.67
VPS29-206ENST00000549578 GPAA1O43292 621 aa25.49■■□□□ 1.67
VPS29-206ENST00000549578 WDHD1O75717 1129 aaPredicted RBP25.49■■□□□ 1.67
VPS29-206ENST00000549578 NFIAQ12857 509 aa25.49■■□□□ 1.67
VPS29-206ENST00000549578 HELLSQ9NRZ9 838 aa25.49■■□□□ 1.67
VPS29-206ENST00000549578 PGAP2Q9UHJ9 254 aa25.49■■□□□ 1.67
VPS29-206ENST00000549578 CERS3Q8IU89 383 aa25.48■■□□□ 1.67
VPS29-206ENST00000549578 DCPSQ96C86 337 aaKnown RBP25.48■■□□□ 1.67
VPS29-206ENST00000549578 POLR2AP24928 1970 aaKnown RBP25.48■■□□□ 1.67
VPS29-206ENST00000549578 CDK5RAP2Q96SN8 1893 aa25.48■■□□□ 1.67
VPS29-206ENST00000549578 MCMDC2Q4G0Z9 681 aa25.47■■□□□ 1.67
VPS29-206ENST00000549578 MAP1SQ66K74 1059 aaPredicted RBP25.47■■□□□ 1.67
VPS29-206ENST00000549578 STRBPQ96SI9 672 aaKnown RBP25.47■■□□□ 1.67
VPS29-206ENST00000549578 DDX4Q9NQI0 724 aaKnown RBP25.47■■□□□ 1.67
VPS29-206ENST00000549578 PITPNM2Q9BZ72 1349 aa25.47■■□□□ 1.67
VPS29-206ENST00000549578 PRKAB2O43741 272 aa25.47■■□□□ 1.67
VPS29-206ENST00000549578 CDC45O75419 566 aa25.47■■□□□ 1.67
VPS29-206ENST00000549578 PICALMQ13492 652 aa25.47■■□□□ 1.67
VPS29-206ENST00000549578 ZNF589Q86UQ0 364 aaPredicted RBP25.47■■□□□ 1.67
VPS29-206ENST00000549578 APOBEC3FQ8IUX4 373 aaKnown RBP25.47■■□□□ 1.67
VPS29-206ENST00000549578 TGFBRAP1Q8WUH2 860 aa25.47■■□□□ 1.67
VPS29-206ENST00000549578 IL25Q9H293 177 aa25.47■■□□□ 1.67
VPS29-206ENST00000549578 TCP10Q12799 353 aa25.46■■□□□ 1.67
VPS29-206ENST00000549578 IDI2Q9BXS1 227 aa25.46■■□□□ 1.67
VPS29-206ENST00000549578 CRNKL1Q9BZJ0 848 aaKnown RBP25.46■■□□□ 1.67
VPS29-206ENST00000549578 FAM198AQ9UFP1 575 aa25.46■■□□□ 1.67
VPS29-206ENST00000549578 CNTNAP1P78357 1384 aa25.45■■□□□ 1.66
VPS29-206ENST00000549578 ADM5C9JUS6 153 aa25.45■■□□□ 1.66
VPS29-206ENST00000549578 SDR42E1Q8WUS8 393 aa25.45■■□□□ 1.66
VPS29-206ENST00000549578 SLC4A4Q9Y6R1 1079 aa25.45■■□□□ 1.66
VPS29-206ENST00000549578 FOCADQ5VW36 1801 aa25.44■■□□□ 1.66
VPS29-206ENST00000549578 USP5P45974 858 aa25.44■■□□□ 1.66
VPS29-206ENST00000549578 FKBP1CQ5VVH2 108 aa25.44■■□□□ 1.66
VPS29-206ENST00000549578 KRT26Q7Z3Y9 468 aa25.44■■□□□ 1.66
VPS29-206ENST00000549578 MAPKAPK5Q8IW41 473 aa25.44■■□□□ 1.66
VPS29-206ENST00000549578 SULF1Q8IWU6 871 aa25.44■■□□□ 1.66
VPS29-206ENST00000549578 GLIS2Q9BZE0 524 aaPredicted RBP25.44■■□□□ 1.66
VPS29-206ENST00000549578 TNFAIP1Q13829 316 aa25.43■■□□□ 1.66
VPS29-206ENST00000549578 RASA3Q14644 834 aa25.43■■□□□ 1.66
VPS29-206ENST00000549578 CHADLQ6NUI6 762 aa25.43■■□□□ 1.66
VPS29-206ENST00000549578 DLK2Q6UY11 383 aa25.43■■□□□ 1.66
VPS29-206ENST00000549578 ZFPM1Q8IX07 1006 aa25.43■■□□□ 1.66
VPS29-206ENST00000549578 RUFY2Q8WXA3 655 aa25.43■■□□□ 1.66
VPS29-206ENST00000549578 DEFB129Q9H1M3 183 aa25.43■■□□□ 1.66
VPS29-206ENST00000549578 FLT1P17948 1338 aa25.43■■□□□ 1.66
VPS29-206ENST00000549578 CCDC171Q6TFL3 1326 aa25.43■■□□□ 1.66
VPS29-206ENST00000549578 USP48Q86UV5 1035 aa25.42■■□□□ 1.66
VPS29-206ENST00000549578 TMEM39BQ9GZU3 492 aa25.42■■□□□ 1.66
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms