RNA–Protein interactions for RNA: ENST00000549064.1

LIMA1-204, Transcript of LIM domain and actin binding 1, humanhuman

TSL 2

Gene LIMA1, Length 648 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-204ENST00000549064 LRCH3Q96II8 777 aa8.64□□□□□ -1.03
LIMA1-204ENST00000549064 USB1Q9BQ65 265 aaKnown RBP8.64□□□□□ -1.03
LIMA1-204ENST00000549064 MIS18AQ9NYP9 233 aa8.64□□□□□ -1.03
LIMA1-204ENST00000549064 USP17L5A8MUK1 530 aa8.63□□□□□ -1.03
LIMA1-204ENST00000549064 BBOX1O75936 387 aa8.63□□□□□ -1.03
LIMA1-204ENST00000549064 F12P00748 615 aaPredicted RBP8.63□□□□□ -1.03
LIMA1-204ENST00000549064 HSPA5P11021 654 aaKnown RBP8.63□□□□□ -1.03
LIMA1-204ENST00000549064 HCLS1P14317 486 aaPredicted RBP8.63□□□□□ -1.03
LIMA1-204ENST00000549064 PBX2P40425 430 aa8.63□□□□□ -1.03
LIMA1-204ENST00000549064 CC2D1BQ5T0F9 858 aaKnown RBP8.63□□□□□ -1.03
LIMA1-204ENST00000549064 ANGEL2Q5VTE6 544 aaKnown RBP8.63□□□□□ -1.03
LIMA1-204ENST00000549064 PPP1R42Q7Z4L9 355 aa8.63□□□□□ -1.03
LIMA1-204ENST00000549064 FAM174AQ8TBP5 190 aa8.63□□□□□ -1.03
LIMA1-204ENST00000549064 CDKN2AIPQ9NXV6 580 aaPredicted RBP8.63□□□□□ -1.03
LIMA1-204ENST00000549064 TRIM17Q9Y577 477 aa8.63□□□□□ -1.03
LIMA1-204ENST00000549064 CEP290O15078 2479 aa8.62□□□□□ -1.03
LIMA1-204ENST00000549064 ECE2O60344 883 aa8.62□□□□□ -1.03
LIMA1-204ENST00000549064 TM4SF4P48230 202 aa8.62□□□□□ -1.03
LIMA1-204ENST00000549064 CNGB1Q14028 1251 aaPredicted RBP8.62□□□□□ -1.03
LIMA1-204ENST00000549064 NOM1Q5C9Z4 860 aaKnown RBP8.62□□□□□ -1.03
LIMA1-204ENST00000549064 SLC10A5Q5PT55 438 aa8.62□□□□□ -1.03
LIMA1-204ENST00000549064 PRAMEF18Q5VWM3 479 aa8.62□□□□□ -1.03
LIMA1-204ENST00000549064 BRICD5Q6PL45 260 aa8.62□□□□□ -1.03
LIMA1-204ENST00000549064 MRPL50Q8N5N7 158 aaKnown RBP8.62□□□□□ -1.03
LIMA1-204ENST00000549064 SLC17A8Q8NDX2 589 aa8.62□□□□□ -1.03
LIMA1-204ENST00000549064 NOVA2Q9UNW9 492 aaKnown RBP8.62□□□□□ -1.03
LIMA1-204ENST00000549064 DLG5Q8TDM6 1919 aa8.62□□□□□ -1.03
LIMA1-204ENST00000549064 PSME4Q14997 1843 aa8.61□□□□□ -1.03
LIMA1-204ENST00000549064 RPS12P25398 132 aaKnown RBP8.61□□□□□ -1.03
LIMA1-204ENST00000549064 CTHP32929 405 aa8.61□□□□□ -1.03
LIMA1-204ENST00000549064 GRAPQ13588 217 aa8.61□□□□□ -1.03
LIMA1-204ENST00000549064 SCARF1Q14162 830 aa8.61□□□□□ -1.03
LIMA1-204ENST00000549064 ELOAQ14241 798 aaKnown RBP8.61□□□□□ -1.03
LIMA1-204ENST00000549064 OTOP1Q7RTM1 612 aa8.61□□□□□ -1.03
LIMA1-204ENST00000549064 GRAPLQ8TC17 118 aaPredicted RBP8.61□□□□□ -1.03
LIMA1-204ENST00000549064 RTF1Q92541 710 aaKnown RBP8.61□□□□□ -1.03
LIMA1-204ENST00000549064 UTP14AQ9BVJ6 771 aaKnown RBP8.61□□□□□ -1.03
LIMA1-204ENST00000549064 POLLQ9UGP5 575 aa8.61□□□□□ -1.03
LIMA1-204ENST00000549064 NSFL1CQ9UNZ2 370 aaKnown RBP8.61□□□□□ -1.03
LIMA1-204ENST00000549064 JUNDP17535 347 aa8.6□□□□□ -1.03
LIMA1-204ENST00000549064 FKBP1BP68106 108 aa8.6□□□□□ -1.03
LIMA1-204ENST00000549064 PARP10Q53GL7 1025 aa8.6□□□□□ -1.03
LIMA1-204ENST00000549064 INTS3Q68E01 1043 aaKnown RBP8.6□□□□□ -1.03
LIMA1-204ENST00000549064 B4GALNT3Q6L9W6 998 aa8.6□□□□□ -1.03
LIMA1-204ENST00000549064 DDX46Q7L014 1031 aaKnown RBP8.6□□□□□ -1.03
LIMA1-204ENST00000549064 OTUD5Q96G74 571 aa8.6□□□□□ -1.03
LIMA1-204ENST00000549064 THUMPD2Q9BTF0 503 aaKnown RBP8.6□□□□□ -1.03
LIMA1-204ENST00000549064 GNEQ9Y223 722 aaKnown RBP8.6□□□□□ -1.03
LIMA1-204ENST00000549064 H0YGN5 161 aa8.59□□□□□ -1.03
LIMA1-204ENST00000549064 GPSM2P81274 684 aa8.59□□□□□ -1.03
LIMA1-204ENST00000549064 CAP1Q01518 475 aa8.59□□□□□ -1.03
LIMA1-204ENST00000549064 TAF7Q15545 349 aaPredicted RBP8.59□□□□□ -1.03
LIMA1-204ENST00000549064 CRTC2Q53ET0 693 aaPredicted RBP8.59□□□□□ -1.03
LIMA1-204ENST00000549064 CELF1Q92879 486 aaKnown RBP8.59□□□□□ -1.03
LIMA1-204ENST00000549064 PRR14Q9BWN1 585 aa8.59□□□□□ -1.03
LIMA1-204ENST00000549064 CFHR5Q9BXR6 569 aa8.59□□□□□ -1.03
LIMA1-204ENST00000549064 ZNF609O15014 1411 aa8.58□□□□□ -1.04
LIMA1-204ENST00000549064 USP17L15C9J2P7 530 aa8.58□□□□□ -1.04
LIMA1-204ENST00000549064 USP17L10C9JJH3 530 aa8.58□□□□□ -1.04
LIMA1-204ENST00000549064 USP17L13C9JLJ4 530 aa8.58□□□□□ -1.04
LIMA1-204ENST00000549064 USP17L12C9JPN9 530 aa8.58□□□□□ -1.04
LIMA1-204ENST00000549064 USP17L11C9JVI0 530 aa8.58□□□□□ -1.04
LIMA1-204ENST00000549064 USP17L21D6R901 530 aa8.58□□□□□ -1.04
LIMA1-204ENST00000549064 USP17L18D6R9N7 530 aa8.58□□□□□ -1.04
LIMA1-204ENST00000549064 USP17L22D6RA61 530 aa8.58□□□□□ -1.04
LIMA1-204ENST00000549064 USP17L17D6RBQ6 530 aa8.58□□□□□ -1.04
LIMA1-204ENST00000549064 USP17L19D6RCP7 530 aa8.58□□□□□ -1.04
LIMA1-204ENST00000549064 USP17L20D6RJB6 530 aa8.58□□□□□ -1.04
LIMA1-204ENST00000549064 FMNL1O95466 1100 aaPredicted RBP8.58□□□□□ -1.04
LIMA1-204ENST00000549064 ANXA1P04083 346 aa8.58□□□□□ -1.04
LIMA1-204ENST00000549064 VIL1P09327 827 aaKnown RBP8.58□□□□□ -1.04
LIMA1-204ENST00000549064 EMP3P54852 163 aa8.58□□□□□ -1.04
LIMA1-204ENST00000549064 ZNF280AP59817 542 aaPredicted RBP8.58□□□□□ -1.04
LIMA1-204ENST00000549064 PTPN12Q05209 780 aaKnown RBP8.58□□□□□ -1.04
LIMA1-204ENST00000549064 USP17L24Q0WX57 530 aa8.58□□□□□ -1.04
LIMA1-204ENST00000549064 SREBF2Q12772 1141 aa8.58□□□□□ -1.04
LIMA1-204ENST00000549064 PRKG1Q13976 671 aa8.58□□□□□ -1.04
LIMA1-204ENST00000549064 PTPRNQ16849 979 aa8.58□□□□□ -1.04
LIMA1-204ENST00000549064 PLEKHM2Q8IWE5 1019 aa8.58□□□□□ -1.04
LIMA1-204ENST00000549064 SCUBE3Q8IX30 993 aa8.58□□□□□ -1.04
LIMA1-204ENST00000549064 ZNF687Q8N1G0 1237 aa8.58□□□□□ -1.04
LIMA1-204ENST00000549064 MARVELD3Q96A59 401 aa8.58□□□□□ -1.04
LIMA1-204ENST00000549064 PTPN22Q9Y2R2 807 aa8.58□□□□□ -1.04
LIMA1-204ENST00000549064 LAMB1P07942 1786 aa8.58□□□□□ -1.04
LIMA1-204ENST00000549064 E9PSI1 815 aa8.57□□□□□ -1.04
LIMA1-204ENST00000549064 EIF4A1P60842 406 aaKnown RBP8.57□□□□□ -1.04
LIMA1-204ENST00000549064 PROSER3Q2NL68 480 aa8.57□□□□□ -1.04
LIMA1-204ENST00000549064 PHLDB3Q6NSJ2 640 aa8.57□□□□□ -1.04
LIMA1-204ENST00000549064 LRP10Q7Z4F1 713 aa8.57□□□□□ -1.04
LIMA1-204ENST00000549064 NLRP10Q86W26 655 aa8.57□□□□□ -1.04
LIMA1-204ENST00000549064 CD99L2Q8TCZ2 262 aa8.57□□□□□ -1.04
LIMA1-204ENST00000549064 ARMC5Q96C12 935 aa8.57□□□□□ -1.04
LIMA1-204ENST00000549064 THAP11Q96EK4 314 aa8.57□□□□□ -1.04
LIMA1-204ENST00000549064 FZD1Q9UP38 647 aa8.57□□□□□ -1.04
LIMA1-204ENST00000549064 SALL2Q9Y467 1007 aaPredicted RBP8.57□□□□□ -1.04
LIMA1-204ENST00000549064 RANBP2P49792 3224 aaKnown RBP8.57□□□□□ -1.04
LIMA1-204ENST00000549064 ZNF646O15015 1829 aaPredicted RBP8.57□□□□□ -1.04
LIMA1-204ENST00000549064 PITPNM2Q9BZ72 1349 aa8.56□□□□□ -1.04
LIMA1-204ENST00000549064 CUL9Q8IWT3 2517 aa8.56□□□□□ -1.04
LIMA1-204ENST00000549064 FAM205CA6NFA0 338 aa8.56□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms