RNA–Protein interactions for RNA: ENST00000540960.1

CHD4-208, Transcript of chromodomain helicase DNA binding protein 4, humanhuman

TSL 5

Gene CHD4, Length 892 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD4-208ENST00000540960 HMMRO75330 724 aa10.36□□□□□ -0.75
CHD4-208ENST00000540960 SLC4A2P04920 1241 aa10.36□□□□□ -0.75
CHD4-208ENST00000540960 KIAA0825Q8IV33 1275 aa10.36□□□□□ -0.75
CHD4-208ENST00000540960 RPAP2Q8IXW5 612 aaPredicted RBP10.36□□□□□ -0.75
CHD4-208ENST00000540960 FBXW7Q969H0 707 aa10.36□□□□□ -0.75
CHD4-208ENST00000540960 NBPF3Q9H094 633 aa10.36□□□□□ -0.75
CHD4-208ENST00000540960 ANKIB1Q9P2G1 1089 aa10.36□□□□□ -0.75
CHD4-208ENST00000540960 GGA1Q9UJY5 639 aa10.36□□□□□ -0.75
CHD4-208ENST00000540960 COL1A1P02452 1464 aaPredicted RBP10.36□□□□□ -0.75
CHD4-208ENST00000540960 ADGRA2Q96PE1 1338 aa10.35□□□□□ -0.75
CHD4-208ENST00000540960 CLRN2A0PK11 232 aa10.35□□□□□ -0.75
CHD4-208ENST00000540960 GNAI3P08754 354 aa10.35□□□□□ -0.75
CHD4-208ENST00000540960 RLBP1P12271 317 aa10.35□□□□□ -0.75
CHD4-208ENST00000540960 RPS8P62241 208 aaKnown RBP10.35□□□□□ -0.75
CHD4-208ENST00000540960 VGLL4Q14135 290 aa10.35□□□□□ -0.75
CHD4-208ENST00000540960 GRIN2CQ14957 1233 aa10.35□□□□□ -0.75
CHD4-208ENST00000540960 SHHQ15465 462 aa10.35□□□□□ -0.75
CHD4-208ENST00000540960 SUPT20HL1Q3ZLR7 823 aa10.35□□□□□ -0.75
CHD4-208ENST00000540960 CDAN1Q8IWY9 1227 aa10.35□□□□□ -0.75
CHD4-208ENST00000540960 ATXN2LQ8WWM7 1075 aaKnown RBP10.35□□□□□ -0.75
CHD4-208ENST00000540960 C11orf49Q9H6J7 331 aa10.35□□□□□ -0.75
CHD4-208ENST00000540960 C11orf16Q9NQ32 467 aa10.35□□□□□ -0.75
CHD4-208ENST00000540960 SH3TC1Q8TE82 1336 aa10.34□□□□□ -0.75
CHD4-208ENST00000540960 NPM3O75607 178 aaKnown RBP10.34□□□□□ -0.75
CHD4-208ENST00000540960 DDX58O95786 925 aaKnown RBP10.34□□□□□ -0.75
CHD4-208ENST00000540960 FLT3LGP49771 235 aa10.34□□□□□ -0.75
CHD4-208ENST00000540960 EIF4A1P60842 406 aaKnown RBP10.34□□□□□ -0.75
CHD4-208ENST00000540960 SF3B3Q15393 1217 aaKnown RBP10.34□□□□□ -0.75
CHD4-208ENST00000540960 C9orf50Q5SZB4 431 aa10.34□□□□□ -0.75
CHD4-208ENST00000540960 HDGFL1Q5TGJ6 251 aa10.34□□□□□ -0.75
CHD4-208ENST00000540960 LRP10Q7Z4F1 713 aa10.34□□□□□ -0.75
CHD4-208ENST00000540960 HELBQ8NG08 1087 aaPredicted RBP10.34□□□□□ -0.75
CHD4-208ENST00000540960 SEC31BQ9NQW1 1179 aa10.34□□□□□ -0.75
CHD4-208ENST00000540960 DBF4Q9UBU7 674 aaPredicted RBP10.34□□□□□ -0.75
CHD4-208ENST00000540960 RBM19Q9Y4C8 960 aaKnown RBP10.34□□□□□ -0.75
CHD4-208ENST00000540960 FAM86C2PA6NEL3 165 aa10.33□□□□□ -0.76
CHD4-208ENST00000540960 ANXA1P04083 346 aa10.33□□□□□ -0.76
CHD4-208ENST00000540960 ANP32AP39687 249 aaKnown RBP10.33□□□□□ -0.76
CHD4-208ENST00000540960 LRRC26Q2I0M4 334 aa10.33□□□□□ -0.76
CHD4-208ENST00000540960 ANKLE1Q8NAG6 615 aa10.33□□□□□ -0.76
CHD4-208ENST00000540960 XRN2Q9H0D6 950 aaKnown RBP eCLIP10.33□□□□□ -0.76
CHD4-208ENST00000540960 HYPKQ9NX55 129 aa10.33□□□□□ -0.76
CHD4-208ENST00000540960 ZNF804BA4D1E1 1349 aa10.33□□□□□ -0.76
CHD4-208ENST00000540960 WDHD1O75717 1129 aaPredicted RBP10.32□□□□□ -0.76
CHD4-208ENST00000540960 CETPP11597 493 aa10.32□□□□□ -0.76
CHD4-208ENST00000540960 CAPN2P17655 700 aa10.32□□□□□ -0.76
CHD4-208ENST00000540960 MRPS5P82675 430 aaKnown RBP10.32□□□□□ -0.76
CHD4-208ENST00000540960 RASA3Q14644 834 aa10.32□□□□□ -0.76
CHD4-208ENST00000540960 TMEM31Q5JXX7 168 aa10.32□□□□□ -0.76
CHD4-208ENST00000540960 POTEEQ6S8J3 1075 aa10.32□□□□□ -0.76
CHD4-208ENST00000540960 SMC5Q8IY18 1101 aa10.32□□□□□ -0.76
CHD4-208ENST00000540960 PPP2R3BQ9Y5P8 575 aa10.32□□□□□ -0.76
CHD4-208ENST00000540960 LTBP2Q14767 1821 aa10.31□□□□□ -0.76
CHD4-208ENST00000540960 MYO9BQ13459 2157 aa10.31□□□□□ -0.76
CHD4-208ENST00000540960 IRF6O14896 467 aa10.31□□□□□ -0.76
CHD4-208ENST00000540960 FCGRTP55899 365 aa10.31□□□□□ -0.76
CHD4-208ENST00000540960 FLIIQ13045 1269 aa10.31□□□□□ -0.76
CHD4-208ENST00000540960 TRIM32Q13049 653 aa10.31□□□□□ -0.76
CHD4-208ENST00000540960 FKBP5Q13451 457 aaPredicted RBP10.31□□□□□ -0.76
CHD4-208ENST00000540960 PROSER3Q2NL68 480 aa10.31□□□□□ -0.76
CHD4-208ENST00000540960 RTL5Q5HYW3 569 aaPredicted RBP10.31□□□□□ -0.76
CHD4-208ENST00000540960 STRIP1Q5VSL9 837 aa10.31□□□□□ -0.76
CHD4-208ENST00000540960 PXYLP1Q8TE99 480 aa10.31□□□□□ -0.76
CHD4-208ENST00000540960 KHSRPQ92945 711 aaKnown RBP eCLIP10.31□□□□□ -0.761e-6■□□□□ 9.5
CHD4-208ENST00000540960 FAM89AQ96GI7 184 aa10.31□□□□□ -0.76
CHD4-208ENST00000540960 PRMT6Q96LA8 375 aaPredicted RBP10.31□□□□□ -0.76
CHD4-208ENST00000540960 UPF2Q9HAU5 1272 aaKnown RBP10.31□□□□□ -0.76
CHD4-208ENST00000540960 VEZTQ9HBM0 779 aa10.31□□□□□ -0.76
CHD4-208ENST00000540960 ZCCHC17Q9NP64 241 aaKnown RBP10.31□□□□□ -0.76
CHD4-208ENST00000540960 THEGQ9P2T0 379 aa10.31□□□□□ -0.76
CHD4-208ENST00000540960 PCDHB15Q9Y5E8 787 aa10.31□□□□□ -0.76
CHD4-208ENST00000540960 DNAH12Q6ZR08 3092 aa10.31□□□□□ -0.76
CHD4-208ENST00000540960 DLG5Q8TDM6 1919 aa10.31□□□□□ -0.76
CHD4-208ENST00000540960 IGHDP01880 384 aa10.3□□□□□ -0.76
CHD4-208ENST00000540960 GNAI2P04899 355 aa10.3□□□□□ -0.76
CHD4-208ENST00000540960 PDE4AP27815 886 aa10.3□□□□□ -0.76
CHD4-208ENST00000540960 MAP3K9P80192 1104 aa10.3□□□□□ -0.76
CHD4-208ENST00000540960 SMAD3P84022 425 aaKnown RBP10.3□□□□□ -0.76
CHD4-208ENST00000540960 PDIA6Q15084 440 aa10.3□□□□□ -0.76
CHD4-208ENST00000540960 DLGAP5Q15398 846 aa10.3□□□□□ -0.76
CHD4-208ENST00000540960 TXNRD3Q86VQ6 643 aa10.3□□□□□ -0.76
CHD4-208ENST00000540960 DDX55Q8NHQ9 600 aaKnown RBP eCLIP10.3□□□□□ -0.76
CHD4-208ENST00000540960 BACH2Q9BYV9 841 aa10.3□□□□□ -0.76
CHD4-208ENST00000540960 TAOK2Q9UL54 1235 aa10.3□□□□□ -0.76
CHD4-208ENST00000540960 MYO3BQ8WXR4 1341 aa10.3□□□□□ -0.76
CHD4-208ENST00000540960 SPDYE5A6NIY4 337 aa10.29□□□□□ -0.76
CHD4-208ENST00000540960 PDHXO00330 501 aa10.29□□□□□ -0.76
CHD4-208ENST00000540960 BCRP11274 1271 aa10.29□□□□□ -0.76
CHD4-208ENST00000540960 BMP1P13497 986 aa10.29□□□□□ -0.76
CHD4-208ENST00000540960 CCDC85BQ15834 202 aaPredicted RBP10.29□□□□□ -0.76
CHD4-208ENST00000540960 ZBTB38Q8NAP3 1195 aaPredicted RBP10.29□□□□□ -0.76
CHD4-208ENST00000540960 TEPSINQ96N21 525 aa10.29□□□□□ -0.76
CHD4-208ENST00000540960 LBHD1Q9BQE6 289 aaPredicted RBP10.29□□□□□ -0.76
CHD4-208ENST00000540960 SNCAIPQ9Y6H5 919 aa10.29□□□□□ -0.76
CHD4-208ENST00000540960 REV3LO60673 3130 aa10.28□□□□□ -0.76
CHD4-208ENST00000540960 ALDH1L1O75891 902 aa10.28□□□□□ -0.76
CHD4-208ENST00000540960 COL6A1P12109 1028 aa10.28□□□□□ -0.76
CHD4-208ENST00000540960 SNAPC2Q13487 334 aa10.28□□□□□ -0.76
CHD4-208ENST00000540960 TTLL5Q6EMB2 1281 aa10.28□□□□□ -0.76
CHD4-208ENST00000540960 CERS5Q8N5B7 392 aa10.28□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms