RNA–Protein interactions for RNA: ENST00000538909.1

CBX3P4-201, Transcript of chromobox 3 pseudogene 4, humanhuman

BASIC

Gene CBX3P4, Length 354 nt, Biotype transcribed processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CBX3P4-201ENST00000538909 PRR23BQ6ZRT6 265 aa4.43□□□□□ -1.7
CBX3P4-201ENST00000538909 PROSER2Q86WR7 435 aaPredicted RBP4.43□□□□□ -1.7
CBX3P4-201ENST00000538909 TTC16Q8NEE8 873 aa4.43□□□□□ -1.7
CBX3P4-201ENST00000538909 LATS2Q9NRM7 1088 aa4.43□□□□□ -1.7
CBX3P4-201ENST00000538909 IQCJ-SCHIP1C9J366 451 aaPredicted RBP4.42□□□□□ -1.7
CBX3P4-201ENST00000538909 ITIH2P19823 946 aa4.42□□□□□ -1.7
CBX3P4-201ENST00000538909 PCDH1Q08174 1060 aa4.42□□□□□ -1.7
CBX3P4-201ENST00000538909 IFI16Q16666 785 aaKnown RBP4.42□□□□□ -1.7
CBX3P4-201ENST00000538909 FYB2Q5VWT5 728 aa4.42□□□□□ -1.7
CBX3P4-201ENST00000538909 SLC23A3Q6PIS1 610 aa4.42□□□□□ -1.7
CBX3P4-201ENST00000538909 MPZL3Q6UWV2 235 aa4.42□□□□□ -1.7
CBX3P4-201ENST00000538909 PMEPA1Q969W9 287 aa4.42□□□□□ -1.7
CBX3P4-201ENST00000538909 BHLHE41Q9C0J9 482 aaPredicted RBP4.42□□□□□ -1.7
CBX3P4-201ENST00000538909 CXXC1Q9P0U4 656 aaPredicted RBP4.42□□□□□ -1.7
CBX3P4-201ENST00000538909 NPIPB6E9PJ23 425 aa4.41□□□□□ -1.7
CBX3P4-201ENST00000538909 NFIBO00712 420 aa4.41□□□□□ -1.7
CBX3P4-201ENST00000538909 PHACTR2O75167 634 aa4.41□□□□□ -1.7
CBX3P4-201ENST00000538909 CYP11A1P05108 521 aa4.41□□□□□ -1.7
CBX3P4-201ENST00000538909 RPLP1P05386 114 aaKnown RBP4.41□□□□□ -1.7
CBX3P4-201ENST00000538909 EDN3P14138 238 aa4.41□□□□□ -1.7
CBX3P4-201ENST00000538909 PCSK2P16519 638 aa4.41□□□□□ -1.7
CBX3P4-201ENST00000538909 PDE3AQ14432 1141 aa4.41□□□□□ -1.7
CBX3P4-201ENST00000538909 ZNF423Q2M1K9 1284 aa4.41□□□□□ -1.7
CBX3P4-201ENST00000538909 HP1BP3Q5SSJ5 553 aaPredicted RBP4.41□□□□□ -1.7
CBX3P4-201ENST00000538909 XKR5Q6UX68 686 aa4.41□□□□□ -1.7
CBX3P4-201ENST00000538909 FNBP4Q8N3X1 1017 aaPredicted RBP4.41□□□□□ -1.7
CBX3P4-201ENST00000538909 STK32AQ8WU08 396 aa4.41□□□□□ -1.7
CBX3P4-201ENST00000538909 GSX1Q9H4S2 264 aaPredicted RBP4.41□□□□□ -1.7
CBX3P4-201ENST00000538909 LEFTY1O75610 366 aa4.4□□□□□ -1.71
CBX3P4-201ENST00000538909 PDGFAP04085 211 aa4.4□□□□□ -1.71
CBX3P4-201ENST00000538909 CEACAM5P06731 702 aa4.4□□□□□ -1.71
CBX3P4-201ENST00000538909 IKZF1Q13422 519 aa4.4□□□□□ -1.71
CBX3P4-201ENST00000538909 CFAP70Q5T0N1 1121 aa4.4□□□□□ -1.71
CBX3P4-201ENST00000538909 CORO1BQ9BR76 489 aa4.4□□□□□ -1.71
CBX3P4-201ENST00000538909 PIDD1Q9HB75 910 aa4.4□□□□□ -1.71
CBX3P4-201ENST00000538909 RAPGEFL1Q9UHV5 662 aa4.4□□□□□ -1.71
CBX3P4-201ENST00000538909 ZMIZ1Q9ULJ6 1067 aa4.4□□□□□ -1.71
CBX3P4-201ENST00000538909 PPP1R9AQ9ULJ8 1098 aa4.4□□□□□ -1.71
CBX3P4-201ENST00000538909 PLAGL2Q9UPG8 496 aa4.4□□□□□ -1.71
CBX3P4-201ENST00000538909 TMEM265A0A087WTH1 108 aa4.39□□□□□ -1.71
CBX3P4-201ENST00000538909 AOC2O75106 756 aa4.39□□□□□ -1.71
CBX3P4-201ENST00000538909 KRT1P04264 644 aa4.39□□□□□ -1.71
CBX3P4-201ENST00000538909 OXCT1P55809 520 aa4.39□□□□□ -1.71
CBX3P4-201ENST00000538909 ZP2Q05996 745 aa4.39□□□□□ -1.71
CBX3P4-201ENST00000538909 FAM69CQ0P6D2 419 aa4.39□□□□□ -1.71
CBX3P4-201ENST00000538909 DIRC2Q96SL1 478 aa4.39□□□□□ -1.71
CBX3P4-201ENST00000538909 SEPT3Q9UH03 358 aa4.39□□□□□ -1.71
CBX3P4-201ENST00000538909 FOXD3Q9UJU5 478 aaPredicted RBP4.39□□□□□ -1.71
CBX3P4-201ENST00000538909 CTNND2Q9UQB3 1225 aa4.39□□□□□ -1.71
CBX3P4-201ENST00000538909 EIF4EBP3O60516 100 aaPredicted RBP4.38□□□□□ -1.71
CBX3P4-201ENST00000538909 SPRED3Q2MJR0 410 aa4.38□□□□□ -1.71
CBX3P4-201ENST00000538909 PEAR1Q5VY43 1037 aaPredicted RBP4.38□□□□□ -1.71
CBX3P4-201ENST00000538909 TRIM56Q9BRZ2 755 aaKnown RBP4.38□□□□□ -1.71
CBX3P4-201ENST00000538909 WDR18Q9BV38 432 aa4.38□□□□□ -1.71
CBX3P4-201ENST00000538909 CLEC4MQ9H2X3 399 aaPredicted RBP4.38□□□□□ -1.71
CBX3P4-201ENST00000538909 KCNK12Q9HB15 430 aa4.38□□□□□ -1.71
CBX3P4-201ENST00000538909 A0A096LPE4 126 aa4.37□□□□□ -1.71
CBX3P4-201ENST00000538909 A0A1W2PPZ6 126 aa4.37□□□□□ -1.71
CBX3P4-201ENST00000538909 RNGTTO60942 597 aaKnown RBP4.37□□□□□ -1.71
CBX3P4-201ENST00000538909 TNFRSF21O75509 655 aa4.37□□□□□ -1.71
CBX3P4-201ENST00000538909 POLR3DP05423 398 aaPredicted RBP4.37□□□□□ -1.71
CBX3P4-201ENST00000538909 GLI1P08151 1106 aa4.37□□□□□ -1.71
CBX3P4-201ENST00000538909 HOXA5P20719 270 aa4.37□□□□□ -1.71
CBX3P4-201ENST00000538909 AFMP43652 599 aa4.37□□□□□ -1.71
CBX3P4-201ENST00000538909 TMEM67Q5HYA8 995 aa4.37□□□□□ -1.71
CBX3P4-201ENST00000538909 AMIGO3Q86WK7 504 aa4.37□□□□□ -1.71
CBX3P4-201ENST00000538909 KIRREL1Q96J84 757 aa4.37□□□□□ -1.71
CBX3P4-201ENST00000538909 NSUN3Q9H649 340 aaKnown RBP4.37□□□□□ -1.71
CBX3P4-201ENST00000538909 ZFYVE1Q9HBF4 777 aa4.37□□□□□ -1.71
CBX3P4-201ENST00000538909 TMPRSS2O15393 492 aa4.36□□□□□ -1.71
CBX3P4-201ENST00000538909 TMEM253P0C7T8 217 aa4.36□□□□□ -1.71
CBX3P4-201ENST00000538909 LIG1P18858 919 aa4.36□□□□□ -1.71
CBX3P4-201ENST00000538909 MZF1P28698 734 aaPredicted RBP4.36□□□□□ -1.71
CBX3P4-201ENST00000538909 KCNA10Q16322 511 aa4.36□□□□□ -1.71
CBX3P4-201ENST00000538909 CIAPIN1Q6FI81 312 aa4.36□□□□□ -1.71
CBX3P4-201ENST00000538909 SMYD4Q8IYR2 804 aaPredicted RBP4.36□□□□□ -1.71
CBX3P4-201ENST00000538909 TOP6BLQ8N6T0 577 aa4.36□□□□□ -1.71
CBX3P4-201ENST00000538909 FBXO15Q8NCQ5 510 aaPredicted RBP4.36□□□□□ -1.71
CBX3P4-201ENST00000538909 SNX29Q8TEQ0 813 aa4.36□□□□□ -1.71
CBX3P4-201ENST00000538909 RELTQ969Z4 430 aa4.36□□□□□ -1.71
CBX3P4-201ENST00000538909 C20orf173Q96LM9 149 aa4.36□□□□□ -1.71
CBX3P4-201ENST00000538909 DUSP23Q9BVJ7 150 aa4.36□□□□□ -1.71
CBX3P4-201ENST00000538909 MKNK2Q9HBH9 465 aa4.36□□□□□ -1.71
CBX3P4-201ENST00000538909 GRIA4P48058 902 aa4.35□□□□□ -1.71
CBX3P4-201ENST00000538909 TPRNQ4KMQ1 711 aa4.35□□□□□ -1.71
CBX3P4-201ENST00000538909 NOM1Q5C9Z4 860 aaKnown RBP4.35□□□□□ -1.71
CBX3P4-201ENST00000538909 ATG14Q6ZNE5 492 aa4.35□□□□□ -1.71
CBX3P4-201ENST00000538909 CYFIP1Q7L576 1253 aa4.35□□□□□ -1.71
CBX3P4-201ENST00000538909 ZC3H12CQ9C0D7 883 aaKnown RBP4.35□□□□□ -1.71
CBX3P4-201ENST00000538909 POLIQ9UNA4 740 aa4.35□□□□□ -1.71
CBX3P4-201ENST00000538909 AMOTL2Q9Y2J4 779 aa4.35□□□□□ -1.71
CBX3P4-201ENST00000538909 TCAF2A6NFQ2 919 aa4.34□□□□□ -1.71
CBX3P4-201ENST00000538909 NUAK1O60285 661 aa4.34□□□□□ -1.71
CBX3P4-201ENST00000538909 HCLS1P14317 486 aaPredicted RBP4.34□□□□□ -1.71
CBX3P4-201ENST00000538909 EIF1AXP47813 144 aaKnown RBP4.34□□□□□ -1.71
CBX3P4-201ENST00000538909 TTLL4Q14679 1199 aa4.34□□□□□ -1.71
CBX3P4-201ENST00000538909 DDX54Q8TDD1 881 aaKnown RBP4.34□□□□□ -1.71
CBX3P4-201ENST00000538909 ASB11Q8WXH4 323 aa4.34□□□□□ -1.71
CBX3P4-201ENST00000538909 WDR89Q96FK6 387 aaPredicted RBP4.34□□□□□ -1.71
CBX3P4-201ENST00000538909 FANCD2OSQ96PS1 177 aa4.34□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 46.5 ms