RNA–Protein interactions for RNA: ENST00000537750.5

SYNE1-236, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5

Gene SYNE1, Length 2,850 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-236ENST00000537750 BEND6Q5SZJ8 279 aaPredicted RBP17.14■□□□□ 0.33
SYNE1-236ENST00000537750 LEKR1Q6ZMV7 388 aa17.14■□□□□ 0.33
SYNE1-236ENST00000537750 FAN1Q9Y2M0 1017 aa17.14■□□□□ 0.33
SYNE1-236ENST00000537750 PALLDQ8WX93 1383 aa17.14■□□□□ 0.33
SYNE1-236ENST00000537750 MRC1P22897 1456 aa17.14■□□□□ 0.33
SYNE1-236ENST00000537750 GOLGA6L9A6NEM1 432 aa17.14■□□□□ 0.33
SYNE1-236ENST00000537750 PHACTR2O75167 634 aa17.14■□□□□ 0.33
SYNE1-236ENST00000537750 TRMT44Q8IYL2 757 aaKnown RBP17.14■□□□□ 0.33
SYNE1-236ENST00000537750 C19orf44Q9H6X5 657 aa17.14■□□□□ 0.33
SYNE1-236ENST00000537750 HPSEQ9Y251 543 aa17.14■□□□□ 0.33
SYNE1-236ENST00000537750 RFX7Q2KHR2 1363 aa17.13■□□□□ 0.33
SYNE1-236ENST00000537750 HEG1Q9ULI3 1381 aa17.13■□□□□ 0.33
SYNE1-236ENST00000537750 M0R2C6 588 aa17.13■□□□□ 0.33
SYNE1-236ENST00000537750 BRD3Q15059 726 aa17.13■□□□□ 0.33
SYNE1-236ENST00000537750 ANKARQ7Z5J8 1434 aa17.13■□□□□ 0.33
SYNE1-236ENST00000537750 SOWAHDA6NJG2 315 aa17.13■□□□□ 0.33
SYNE1-236ENST00000537750 ATP5J2-PTCD1G3V325 749 aa17.13■□□□□ 0.33
SYNE1-236ENST00000537750 CUTAO60888 179 aa17.13■□□□□ 0.33
SYNE1-236ENST00000537750 PTCD1O75127 700 aaKnown RBP17.13■□□□□ 0.33
SYNE1-236ENST00000537750 IRX3P78415 501 aaPredicted RBP17.13■□□□□ 0.33
SYNE1-236ENST00000537750 ABCB6Q9NP58 842 aa17.13■□□□□ 0.33
SYNE1-236ENST00000537750 PRC1O43663 620 aa17.12■□□□□ 0.33
SYNE1-236ENST00000537750 FMR1Q06787 632 aaKnown RBP eCLIP17.12■□□□□ 0.33
SYNE1-236ENST00000537750 ZNF827Q17R98 1081 aa17.12■□□□□ 0.33
SYNE1-236ENST00000537750 JAKMIP3Q5VZ66 844 aa17.12■□□□□ 0.33
SYNE1-236ENST00000537750 SPECC1LQ69YQ0 1117 aa17.12■□□□□ 0.33
SYNE1-236ENST00000537750 SRGAP1Q7Z6B7 1085 aa17.12■□□□□ 0.33
SYNE1-236ENST00000537750 IQUBQ8NA54 791 aa17.12■□□□□ 0.33
SYNE1-236ENST00000537750 SLIT1O75093 1534 aa17.12■□□□□ 0.33
SYNE1-236ENST00000537750 PXDNQ92626 1479 aa17.12■□□□□ 0.33
SYNE1-236ENST00000537750 RHOXF2BP0C7M4 288 aa17.12■□□□□ 0.33
SYNE1-236ENST00000537750 CNNM3Q8NE01 707 aa17.12■□□□□ 0.33
SYNE1-236ENST00000537750 RHOXF2Q9BQY4 288 aa17.12■□□□□ 0.33
SYNE1-236ENST00000537750 METTL22Q9BUU2 404 aaPredicted RBP17.12■□□□□ 0.33
SYNE1-236ENST00000537750 NFE2L3Q9Y4A8 694 aa17.12■□□□□ 0.33
SYNE1-236ENST00000537750 PLEKHG1Q9ULL1 1385 aa17.12■□□□□ 0.33
SYNE1-236ENST00000537750 RXRAP19793 462 aa17.11■□□□□ 0.33
SYNE1-236ENST00000537750 HDXQ7Z353 690 aa17.11■□□□□ 0.33
SYNE1-236ENST00000537750 OSBP2Q969R2 916 aa17.11■□□□□ 0.33
SYNE1-236ENST00000537750 PLEKHA4Q9H4M7 779 aa17.11■□□□□ 0.33
SYNE1-236ENST00000537750 VPS37DQ86XT2 251 aa17.11■□□□□ 0.33
SYNE1-236ENST00000537750 CPLX3Q8WVH0 158 aa17.11■□□□□ 0.33
SYNE1-236ENST00000537750 HSP90AB3PQ58FF7 597 aa17.1■□□□□ 0.33
SYNE1-236ENST00000537750 SAMSN1Q9NSI8 373 aaKnown RBP17.1■□□□□ 0.33
SYNE1-236ENST00000537750 L1RE1Q9UN81 338 aa17.1■□□□□ 0.33
SYNE1-236ENST00000537750 PLEKHG2Q9H7P9 1386 aa17.1■□□□□ 0.33
SYNE1-236ENST00000537750 PTPAQ15257 358 aa17.1■□□□□ 0.33
SYNE1-236ENST00000537750 CCDC102BQ68D86 513 aa17.1■□□□□ 0.33
SYNE1-236ENST00000537750 LMBR1LQ6UX01 489 aa17.1■□□□□ 0.33
SYNE1-236ENST00000537750 PACS2Q86VP3 889 aa17.1■□□□□ 0.33
SYNE1-236ENST00000537750 RNF113AO15541 343 aaKnown RBP17.09■□□□□ 0.33
SYNE1-236ENST00000537750 ANTXR2P58335 489 aa17.09■□□□□ 0.33
SYNE1-236ENST00000537750 RAD9BQ6WBX8 426 aa17.09■□□□□ 0.33
SYNE1-236ENST00000537750 STK11IPQ8N1F8 1099 aa17.09■□□□□ 0.33
SYNE1-236ENST00000537750 CCDC102AQ96A19 550 aa17.09■□□□□ 0.33
SYNE1-236ENST00000537750 CHMP4CQ96CF2 233 aa17.09■□□□□ 0.33
SYNE1-236ENST00000537750 GNL3Q9BVP2 549 aaKnown RBP eCLIP17.09■□□□□ 0.33
SYNE1-236ENST00000537750 KCNH3Q9ULD8 1083 aa17.09■□□□□ 0.33
SYNE1-236ENST00000537750 AKAP2Q9Y2D5 859 aa17.09■□□□□ 0.33
SYNE1-236ENST00000537750 A0A087WZG4 1122 aa17.09■□□□□ 0.33
SYNE1-236ENST00000537750 RESP18Q5W5W9 173 aa17.09■□□□□ 0.33
SYNE1-236ENST00000537750 ANKRD13DQ6ZTN6 518 aa17.09■□□□□ 0.33
SYNE1-236ENST00000537750 ALG1Q9BT22 464 aa17.09■□□□□ 0.33
SYNE1-236ENST00000537750 TEX13AQ9BXU3 409 aaPredicted RBP17.09■□□□□ 0.33
SYNE1-236ENST00000537750 DENND2AQ9ULE3 1009 aa17.09■□□□□ 0.33
SYNE1-236ENST00000537750 FOXP2O15409 715 aa17.08■□□□□ 0.33
SYNE1-236ENST00000537750 CCDC175P0C221 793 aa17.08■□□□□ 0.33
SYNE1-236ENST00000537750 VSNL1P62760 191 aa17.08■□□□□ 0.33
SYNE1-236ENST00000537750 ZNF569Q5MCW4 686 aa17.08■□□□□ 0.33
SYNE1-236ENST00000537750 HNRNPLLQ8WVV9 542 aaKnown RBP17.08■□□□□ 0.33
SYNE1-236ENST00000537750 MED15Q96RN5 788 aa17.08■□□□□ 0.33
SYNE1-236ENST00000537750 CDC23Q9UJX2 597 aa17.08■□□□□ 0.33
SYNE1-236ENST00000537750 EIF3CLB5ME19 914 aaKnown RBP17.08■□□□□ 0.32
SYNE1-236ENST00000537750 TEX33O43247 280 aa17.08■□□□□ 0.32
SYNE1-236ENST00000537750 IVLP07476 585 aa17.08■□□□□ 0.32
SYNE1-236ENST00000537750 PRR29P0C7W0 189 aa17.08■□□□□ 0.32
SYNE1-236ENST00000537750 GTF2A1P52655 376 aaPredicted RBP17.08■□□□□ 0.32
SYNE1-236ENST00000537750 SKIDA1Q1XH10 827 aa17.08■□□□□ 0.32
SYNE1-236ENST00000537750 GRAMD1CQ8IYS0 662 aa17.08■□□□□ 0.32
SYNE1-236ENST00000537750 PHKBQ93100 1093 aa17.08■□□□□ 0.32
SYNE1-236ENST00000537750 EIF3CQ99613 913 aaKnown RBP17.08■□□□□ 0.32
SYNE1-236ENST00000537750 ADGRG1Q9Y653 693 aa17.08■□□□□ 0.32
SYNE1-236ENST00000537750 DIP2AQ14689 1571 aa17.08■□□□□ 0.32
SYNE1-236ENST00000537750 MARF1Q9Y4F3 1742 aaKnown RBP17.08■□□□□ 0.32
SYNE1-236ENST00000537750 UBE2Q2LH0YL09 131 aa17.07■□□□□ 0.32
SYNE1-236ENST00000537750 ABL1P00519 1130 aa17.07■□□□□ 0.32
SYNE1-236ENST00000537750 IFIT1P09914 478 aaKnown RBP17.07■□□□□ 0.32
SYNE1-236ENST00000537750 ZNF18P17022 549 aa17.07■□□□□ 0.32
SYNE1-236ENST00000537750 KRT40Q6A162 431 aa17.07■□□□□ 0.32
SYNE1-236ENST00000537750 MAP3K14Q99558 947 aa17.07■□□□□ 0.32
SYNE1-236ENST00000537750 MAN1B1Q9UKM7 699 aa17.07■□□□□ 0.32
SYNE1-236ENST00000537750 PPP6R2O75170 966 aa17.07■□□□□ 0.32
SYNE1-236ENST00000537750 FGAP02671 866 aa17.07■□□□□ 0.32
SYNE1-236ENST00000537750 FKBP4Q02790 459 aaKnown RBP eCLIP17.07■□□□□ 0.32
SYNE1-236ENST00000537750 WASHC4Q2M389 1173 aa17.07■□□□□ 0.32
SYNE1-236ENST00000537750 KIF4BQ2VIQ3 1234 aa17.07■□□□□ 0.32
SYNE1-236ENST00000537750 RABL6Q3YEC7 729 aaPredicted RBP17.07■□□□□ 0.32
SYNE1-236ENST00000537750 MB21D2Q8IYB1 491 aaPredicted RBP17.07■□□□□ 0.32
SYNE1-236ENST00000537750 NKX2-3Q8TAU0 364 aa17.07■□□□□ 0.32
SYNE1-236ENST00000537750 RAI14Q9P0K7 980 aa17.07■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms