RNA–Protein interactions for RNA: ENST00000531141.1

CD44-233, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 537 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-233ENST00000531141 CYP4F12Q9HCS2 524 aa6.4□□□□□ -1.38
CD44-233ENST00000531141 CYP8B1Q9UNU6 501 aa6.4□□□□□ -1.38
CD44-233ENST00000531141 SYNGAP1Q96PV0 1343 aa6.4□□□□□ -1.39
CD44-233ENST00000531141 DLGAP3O95886 979 aa6.39□□□□□ -1.39
CD44-233ENST00000531141 GLB1P16278 677 aa6.39□□□□□ -1.39
CD44-233ENST00000531141 LMNB1P20700 586 aa6.39□□□□□ -1.39
CD44-233ENST00000531141 BMP6P22004 513 aa6.39□□□□□ -1.39
CD44-233ENST00000531141 MAP3K11Q16584 847 aa6.39□□□□□ -1.39
CD44-233ENST00000531141 UVSSAQ2YD98 709 aa6.39□□□□□ -1.39
CD44-233ENST00000531141 EXOSC6Q5RKV6 272 aaKnown RBP6.39□□□□□ -1.39
CD44-233ENST00000531141 NUTM2GQ5VZR2 741 aa6.39□□□□□ -1.39
CD44-233ENST00000531141 AGMOQ6ZNB7 445 aa6.39□□□□□ -1.39
CD44-233ENST00000531141 SMG8Q8ND04 991 aaKnown RBP6.39□□□□□ -1.39
CD44-233ENST00000531141 KCNB2Q92953 911 aa6.39□□□□□ -1.39
CD44-233ENST00000531141 CCDC86Q9H6F5 360 aaKnown RBP6.39□□□□□ -1.39
CD44-233ENST00000531141 E9PSI1 815 aa6.38□□□□□ -1.39
CD44-233ENST00000531141 TIAF1O95411 115 aa6.38□□□□□ -1.39
CD44-233ENST00000531141 ITGB2P05107 769 aa6.38□□□□□ -1.39
CD44-233ENST00000531141 GATA4P43694 442 aa6.38□□□□□ -1.39
CD44-233ENST00000531141 IREB2P48200 963 aaKnown RBP6.38□□□□□ -1.39
CD44-233ENST00000531141 KIF4BQ2VIQ3 1234 aa6.38□□□□□ -1.39
CD44-233ENST00000531141 RASIP1Q5U651 963 aa6.38□□□□□ -1.39
CD44-233ENST00000531141 MAP1SQ66K74 1059 aaPredicted RBP6.38□□□□□ -1.39
CD44-233ENST00000531141 PHC3Q8NDX5 983 aa6.38□□□□□ -1.39
CD44-233ENST00000531141 GAL3ST3Q96A11 431 aa6.38□□□□□ -1.39
CD44-233ENST00000531141 RHOVQ96L33 236 aa6.38□□□□□ -1.39
CD44-233ENST00000531141 RSRP1Q9BUV0 290 aa6.38□□□□□ -1.39
CD44-233ENST00000531141 WDR18Q9BV38 432 aa6.38□□□□□ -1.39
CD44-233ENST00000531141 CACNA2D2Q9NY47 1150 aa6.38□□□□□ -1.39
CD44-233ENST00000531141 GGT7Q9UJ14 662 aa6.38□□□□□ -1.39
CD44-233ENST00000531141 ALX3O95076 343 aa6.37□□□□□ -1.39
CD44-233ENST00000531141 ADH5P11766 374 aa6.37□□□□□ -1.39
CD44-233ENST00000531141 DZIP1LQ8IYY4 767 aaKnown RBP6.37□□□□□ -1.39
CD44-233ENST00000531141 RNF34Q969K3 372 aa6.37□□□□□ -1.39
CD44-233ENST00000531141 ACSBG1Q96GR2 724 aa6.37□□□□□ -1.39
CD44-233ENST00000531141 MEGF10Q96KG7 1140 aa6.37□□□□□ -1.39
CD44-233ENST00000531141 TMEM74Q96NL1 305 aa6.37□□□□□ -1.39
CD44-233ENST00000531141 ZC3H12CQ9C0D7 883 aaKnown RBP6.37□□□□□ -1.39
CD44-233ENST00000531141 ZNF862O60290 1169 aa6.36□□□□□ -1.39
CD44-233ENST00000531141 AOC2O75106 756 aa6.36□□□□□ -1.39
CD44-233ENST00000531141 TCF3P15923 654 aa6.36□□□□□ -1.39
CD44-233ENST00000531141 TFE3P19532 575 aaPredicted RBP6.36□□□□□ -1.39
CD44-233ENST00000531141 PREPP48147 710 aa6.36□□□□□ -1.39
CD44-233ENST00000531141 DIEXFQ68CQ4 756 aaKnown RBP6.36□□□□□ -1.39
CD44-233ENST00000531141 PPP1R3FQ6ZSY5 799 aaPredicted RBP6.36□□□□□ -1.39
CD44-233ENST00000531141 RELL1Q8IUW5 271 aa6.36□□□□□ -1.39
CD44-233ENST00000531141 GPBAR1Q8TDU6 330 aa6.36□□□□□ -1.39
CD44-233ENST00000531141 FAM46AQ96IP4 442 aaKnown RBP6.36□□□□□ -1.39
CD44-233ENST00000531141 SSBP4Q9BWG4 385 aaPredicted RBP6.36□□□□□ -1.39
CD44-233ENST00000531141 KRTAP4-8Q9BYQ9 185 aa6.36□□□□□ -1.39
CD44-233ENST00000531141 MIR1-1HGQ9H1L0 117 aa6.36□□□□□ -1.39
CD44-233ENST00000531141 RAD18Q9NS91 495 aa6.36□□□□□ -1.39
CD44-233ENST00000531141 KBTBD4Q9NVX7 518 aa6.36□□□□□ -1.39
CD44-233ENST00000531141 SART1O43290 800 aaKnown RBP6.35□□□□□ -1.39
CD44-233ENST00000531141 GAS2O43903 313 aaKnown RBP6.35□□□□□ -1.39
CD44-233ENST00000531141 ADAM23O75077 832 aa6.35□□□□□ -1.39
CD44-233ENST00000531141 PROCP04070 461 aa6.35□□□□□ -1.39
CD44-233ENST00000531141 SLFN14P0C7P3 912 aa6.35□□□□□ -1.39
CD44-233ENST00000531141 LIG1P18858 919 aa6.35□□□□□ -1.39
CD44-233ENST00000531141 GBP2P32456 591 aaPredicted RBP6.35□□□□□ -1.39
CD44-233ENST00000531141 LMNB2Q03252 620 aa6.35□□□□□ -1.39
CD44-233ENST00000531141 AKAP4Q5JQC9 854 aa6.35□□□□□ -1.39
CD44-233ENST00000531141 CCDC84Q86UT8 332 aaPredicted RBP6.35□□□□□ -1.39
CD44-233ENST00000531141 TRIM42Q8IWZ5 723 aa6.35□□□□□ -1.39
CD44-233ENST00000531141 GRIN3AQ8TCU5 1115 aa6.35□□□□□ -1.39
CD44-233ENST00000531141 AP4E1Q9UPM8 1137 aa6.35□□□□□ -1.39
CD44-233ENST00000531141 HIF3AQ9Y2N7 669 aa6.35□□□□□ -1.39
CD44-233ENST00000531141 PCDHGC5Q9Y5F6 944 aa6.35□□□□□ -1.39
CD44-233ENST00000531141 MSTNO14793 375 aa6.34□□□□□ -1.39
CD44-233ENST00000531141 TMPRSS2O15393 492 aa6.34□□□□□ -1.39
CD44-233ENST00000531141 HDLBPQ00341 1268 aaKnown RBP6.34□□□□□ -1.39
CD44-233ENST00000531141 ID3Q02535 119 aa6.34□□□□□ -1.39
CD44-233ENST00000531141 SOX4Q06945 474 aaPredicted RBP6.34□□□□□ -1.39
CD44-233ENST00000531141 SEPT6Q14141 434 aa6.34□□□□□ -1.39
CD44-233ENST00000531141 METTL16Q86W50 562 aaKnown RBP6.34□□□□□ -1.39
CD44-233ENST00000531141 C12orf50Q8NA57 414 aaPredicted RBP6.34□□□□□ -1.39
CD44-233ENST00000531141 C2CD4AQ8NCU7 369 aaPredicted RBP6.34□□□□□ -1.39
CD44-233ENST00000531141 UTP4Q969X6 686 aaKnown RBP6.34□□□□□ -1.39
CD44-233ENST00000531141 SPOCK3Q9BQ16 436 aa6.34□□□□□ -1.39
CD44-233ENST00000531141 ATXN3LQ9H3M9 355 aa6.34□□□□□ -1.39
CD44-233ENST00000531141 TLR6Q9Y2C9 796 aa6.34□□□□□ -1.39
CD44-233ENST00000531141 F6X3S4 739 aa6.33□□□□□ -1.4
CD44-233ENST00000531141 CAMK2GQ13555 558 aaPredicted RBP6.33□□□□□ -1.4
CD44-233ENST00000531141 SNAP47Q5SQN1 464 aa6.33□□□□□ -1.4
CD44-233ENST00000531141 USP48Q86UV5 1035 aa6.33□□□□□ -1.4
CD44-233ENST00000531141 WDR89Q96FK6 387 aaPredicted RBP6.33□□□□□ -1.4
CD44-233ENST00000531141 MYRFLQ96LU7 910 aa6.33□□□□□ -1.4
CD44-233ENST00000531141 UBL7Q96S82 380 aaPredicted RBP6.33□□□□□ -1.4
CD44-233ENST00000531141 COPRSQ9NQ92 184 aa6.33□□□□□ -1.4
CD44-233ENST00000531141 KCNQ5Q9NR82 932 aa6.33□□□□□ -1.4
CD44-233ENST00000531141 CRIM1Q9NZV1 1036 aa6.33□□□□□ -1.4
CD44-233ENST00000531141 PCDHA4Q9UN74 947 aa6.33□□□□□ -1.4
CD44-233ENST00000531141 PCDHB5Q9Y5E4 795 aa6.33□□□□□ -1.4
CD44-233ENST00000531141 ERVK-24P63145 666 aa6.32□□□□□ -1.4
CD44-233ENST00000531141 ZC3H12AQ5D1E8 599 aaKnown RBP6.32□□□□□ -1.4
CD44-233ENST00000531141 MPRIPQ6WCQ1 1025 aa6.32□□□□□ -1.4
CD44-233ENST00000531141 NT5DC4Q86YG4 428 aa6.32□□□□□ -1.4
CD44-233ENST00000531141 YIPF2Q9BWQ6 316 aa6.32□□□□□ -1.4
CD44-233ENST00000531141 GSX1Q9H4S2 264 aaPredicted RBP6.32□□□□□ -1.4
CD44-233ENST00000531141 TPSG1Q9NRR2 321 aa6.32□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms