RNA–Protein interactions for RNA: ENST00000528922.1

CD44-230, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 1,319 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-230ENST00000528922 AGMOQ6ZNB7 445 aa7.91□□□□□ -1.14
CD44-230ENST00000528922 Q6ZS46 218 aa7.91□□□□□ -1.14
CD44-230ENST00000528922 TXNRD3Q86VQ6 643 aa7.91□□□□□ -1.14
CD44-230ENST00000528922 PHC3Q8NDX5 983 aa7.91□□□□□ -1.14
CD44-230ENST00000528922 CACNA2D2Q9NY47 1150 aa7.91□□□□□ -1.14
CD44-230ENST00000528922 CYP8B1Q9UNU6 501 aa7.91□□□□□ -1.14
CD44-230ENST00000528922 TLR6Q9Y2C9 796 aa7.91□□□□□ -1.14
CD44-230ENST00000528922 E9PSI1 815 aa7.9□□□□□ -1.14
CD44-230ENST00000528922 TFE3P19532 575 aaPredicted RBP7.9□□□□□ -1.14
CD44-230ENST00000528922 RPS26P62854 115 aaKnown RBP7.9□□□□□ -1.14
CD44-230ENST00000528922 PTPN11Q06124 597 aaPredicted RBP7.9□□□□□ -1.14
CD44-230ENST00000528922 LLGL2Q6P1M3 1020 aa7.9□□□□□ -1.14
CD44-230ENST00000528922 UBL7Q96S82 380 aaPredicted RBP7.9□□□□□ -1.14
CD44-230ENST00000528922 METTL5Q9NRN9 209 aaKnown RBP7.9□□□□□ -1.14
CD44-230ENST00000528922 KRT82Q9NSB4 513 aa7.9□□□□□ -1.14
CD44-230ENST00000528922 GGT7Q9UJ14 662 aa7.9□□□□□ -1.14
CD44-230ENST00000528922 PCDHB5Q9Y5E4 795 aa7.9□□□□□ -1.14
CD44-230ENST00000528922 RB1CC1Q8TDY2 1594 aa7.9□□□□□ -1.14
CD44-230ENST00000528922 RLBP1P12271 317 aa7.89□□□□□ -1.15
CD44-230ENST00000528922 LRRC14Q15048 493 aa7.89□□□□□ -1.15
CD44-230ENST00000528922 C9orf131Q5VYM1 1079 aa7.89□□□□□ -1.15
CD44-230ENST00000528922 NUTM2GQ5VZR2 741 aa7.89□□□□□ -1.15
CD44-230ENST00000528922 METTL16Q86W50 562 aaKnown RBP7.89□□□□□ -1.15
CD44-230ENST00000528922 SMG8Q8ND04 991 aaKnown RBP7.89□□□□□ -1.15
CD44-230ENST00000528922 GPBAR1Q8TDU6 330 aa7.89□□□□□ -1.15
CD44-230ENST00000528922 RNF34Q969K3 372 aa7.89□□□□□ -1.15
CD44-230ENST00000528922 MEGF10Q96KG7 1140 aa7.89□□□□□ -1.15
CD44-230ENST00000528922 WDR18Q9BV38 432 aa7.89□□□□□ -1.15
CD44-230ENST00000528922 SUGCTQ9HAC7 445 aa7.89□□□□□ -1.15
CD44-230ENST00000528922 KBTBD4Q9NVX7 518 aa7.89□□□□□ -1.15
CD44-230ENST00000528922 AOC2O75106 756 aa7.88□□□□□ -1.15
CD44-230ENST00000528922 DRD2P14416 443 aa7.88□□□□□ -1.15
CD44-230ENST00000528922 GLB1P16278 677 aa7.88□□□□□ -1.15
CD44-230ENST00000528922 HDLBPQ00341 1268 aaKnown RBP7.88□□□□□ -1.15
CD44-230ENST00000528922 HS2ST1Q7LGA3 356 aa7.88□□□□□ -1.15
CD44-230ENST00000528922 RELL1Q8IUW5 271 aa7.88□□□□□ -1.15
CD44-230ENST00000528922 TMEM74Q96NL1 305 aa7.88□□□□□ -1.15
CD44-230ENST00000528922 SSBP4Q9BWG4 385 aaPredicted RBP7.88□□□□□ -1.15
CD44-230ENST00000528922 MINDY4BA8MYZ0 360 aa7.87□□□□□ -1.15
CD44-230ENST00000528922 TRIM37O94972 964 aa7.87□□□□□ -1.15
CD44-230ENST00000528922 TIAF1O95411 115 aa7.87□□□□□ -1.15
CD44-230ENST00000528922 GBP2P32456 591 aaPredicted RBP7.87□□□□□ -1.15
CD44-230ENST00000528922 GATA4P43694 442 aa7.87□□□□□ -1.15
CD44-230ENST00000528922 KIF4BQ2VIQ3 1234 aa7.87□□□□□ -1.15
CD44-230ENST00000528922 HP1BP3Q5SSJ5 553 aaPredicted RBP7.87□□□□□ -1.15
CD44-230ENST00000528922 DZIP1LQ8IYY4 767 aaKnown RBP7.87□□□□□ -1.15
CD44-230ENST00000528922 C12orf50Q8NA57 414 aaPredicted RBP7.87□□□□□ -1.15
CD44-230ENST00000528922 GAL3ST3Q96A11 431 aa7.87□□□□□ -1.15
CD44-230ENST00000528922 RHOVQ96L33 236 aa7.87□□□□□ -1.15
CD44-230ENST00000528922 RAD18Q9NS91 495 aa7.87□□□□□ -1.15
CD44-230ENST00000528922 PPP1R9AQ9ULJ8 1098 aa7.87□□□□□ -1.15
CD44-230ENST00000528922 PF4P02776 101 aa7.86□□□□□ -1.15
CD44-230ENST00000528922 PREPP48147 710 aa7.86□□□□□ -1.15
CD44-230ENST00000528922 SOX4Q06945 474 aaPredicted RBP7.86□□□□□ -1.15
CD44-230ENST00000528922 CAMK2GQ13555 558 aaPredicted RBP7.86□□□□□ -1.15
CD44-230ENST00000528922 SEPT6Q14141 434 aa7.86□□□□□ -1.15
CD44-230ENST00000528922 AKAP4Q5JQC9 854 aa7.86□□□□□ -1.15
CD44-230ENST00000528922 ANKRD34AQ69YU3 496 aa7.86□□□□□ -1.15
CD44-230ENST00000528922 CYP4F12Q9HCS2 524 aa7.86□□□□□ -1.15
CD44-230ENST00000528922 IGSF5Q9NSI5 407 aa7.86□□□□□ -1.15
CD44-230ENST00000528922 PCDHGC5Q9Y5F6 944 aa7.86□□□□□ -1.15
CD44-230ENST00000528922 CECR2Q9BXF3 1484 aa7.86□□□□□ -1.15
CD44-230ENST00000528922 LMNB2Q03252 620 aa7.85□□□□□ -1.15
CD44-230ENST00000528922 PWP1Q13610 501 aa7.85□□□□□ -1.15
CD44-230ENST00000528922 ZNF394Q53GI3 561 aa7.85□□□□□ -1.15
CD44-230ENST00000528922 SCARA3Q6AZY7 606 aa7.85□□□□□ -1.15
CD44-230ENST00000528922 FDX2Q6P4F2 183 aa7.85□□□□□ -1.15
CD44-230ENST00000528922 FAM46AQ96IP4 442 aaKnown RBP7.85□□□□□ -1.15
CD44-230ENST00000528922 SYNGAP1Q96PV0 1343 aa7.85□□□□□ -1.15
CD44-230ENST00000528922 CEP41Q9BYV8 373 aa7.85□□□□□ -1.15
CD44-230ENST00000528922 PROCP04070 461 aa7.84□□□□□ -1.15
CD44-230ENST00000528922 SLFN14P0C7P3 912 aa7.84□□□□□ -1.15
CD44-230ENST00000528922 ADH5P11766 374 aa7.84□□□□□ -1.15
CD44-230ENST00000528922 TCF3P15923 654 aa7.84□□□□□ -1.15
CD44-230ENST00000528922 GARTP22102 1010 aa7.84□□□□□ -1.15
CD44-230ENST00000528922 CDK8P49336 464 aa7.84□□□□□ -1.15
CD44-230ENST00000528922 FAM160A1Q05DH4 1040 aa7.84□□□□□ -1.15
CD44-230ENST00000528922 ZC3H12AQ5D1E8 599 aaKnown RBP7.84□□□□□ -1.15
CD44-230ENST00000528922 PDZRN4Q6ZMN7 1036 aaPredicted RBP7.84□□□□□ -1.15
CD44-230ENST00000528922 NT5DC4Q86YG4 428 aa7.84□□□□□ -1.15
CD44-230ENST00000528922 TRIM42Q8IWZ5 723 aa7.84□□□□□ -1.15
CD44-230ENST00000528922 C2CD4AQ8NCU7 369 aaPredicted RBP7.84□□□□□ -1.15
CD44-230ENST00000528922 ACSBG1Q96GR2 724 aa7.84□□□□□ -1.15
CD44-230ENST00000528922 MIR1-1HGQ9H1L0 117 aa7.84□□□□□ -1.15
CD44-230ENST00000528922 PCDHA4Q9UN74 947 aa7.84□□□□□ -1.15
CD44-230ENST00000528922 PCDHGB7Q9Y5F8 929 aa7.84□□□□□ -1.15
CD44-230ENST00000528922 ZCCHC6Q5VYS8 1495 aaKnown RBP7.84□□□□□ -1.16
CD44-230ENST00000528922 TMPRSS2O15393 492 aa7.83□□□□□ -1.16
CD44-230ENST00000528922 RACK1P63244 317 aaKnown RBP7.83□□□□□ -1.16
CD44-230ENST00000528922 INPP5AQ14642 412 aa7.83□□□□□ -1.16
CD44-230ENST00000528922 FBXL19Q6PCT2 694 aa7.83□□□□□ -1.16
CD44-230ENST00000528922 BNC2Q6ZN30 1099 aaPredicted RBP7.83□□□□□ -1.16
CD44-230ENST00000528922 USP48Q86UV5 1035 aa7.83□□□□□ -1.16
CD44-230ENST00000528922 ARMC10Q8N2F6 343 aa7.83□□□□□ -1.16
CD44-230ENST00000528922 JARID2Q92833 1246 aaPredicted RBP7.83□□□□□ -1.16
CD44-230ENST00000528922 SPOCK3Q9BQ16 436 aa7.83□□□□□ -1.16
CD44-230ENST00000528922 CRIM1Q9NZV1 1036 aa7.83□□□□□ -1.16
CD44-230ENST00000528922 ADAMTS1Q9UHI8 967 aa7.83□□□□□ -1.16
CD44-230ENST00000528922 DDX41Q9UJV9 622 aaKnown RBP7.83□□□□□ -1.16
CD44-230ENST00000528922 SART1O43290 800 aaKnown RBP7.82□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 39.8 ms