RNA–Protein interactions for RNA: ENST00000528142.5

VPS28-209, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 1,821 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-209ENST00000528142 FOXD4L3Q6VB84 417 aaPredicted RBP24.39■■□□□ 1.49
VPS28-209ENST00000528142 B4E1Z4 1266 aa24.38■■□□□ 1.49
VPS28-209ENST00000528142 IGSF3O75054 1194 aa24.38■■□□□ 1.49
VPS28-209ENST00000528142 DYNLL1P63167 89 aaKnown RBP24.38■■□□□ 1.49
VPS28-209ENST00000528142 AKNAD1Q5T1N1 836 aa24.38■■□□□ 1.49
VPS28-209ENST00000528142 TMEM87AQ8NBN3 555 aa24.38■■□□□ 1.49
VPS28-209ENST00000528142 GPT2Q8TD30 523 aa24.38■■□□□ 1.49
VPS28-209ENST00000528142 CHMP4CQ96CF2 233 aa24.38■■□□□ 1.49
VPS28-209ENST00000528142 INCENPQ9NQS7 918 aa24.38■■□□□ 1.49
VPS28-209ENST00000528142 TIAM2Q8IVF5 1701 aa24.38■■□□□ 1.49
VPS28-209ENST00000528142 CDC37L1Q7L3B6 337 aa24.38■■□□□ 1.49
VPS28-209ENST00000528142 ZNF804AQ7Z570 1209 aa24.38■■□□□ 1.49
VPS28-209ENST00000528142 SDR42E1Q8WUS8 393 aa24.38■■□□□ 1.49
VPS28-209ENST00000528142 STAG1Q8WVM7 1258 aa24.38■■□□□ 1.49
VPS28-209ENST00000528142 GPR101Q96P66 508 aaPredicted RBP24.38■■□□□ 1.49
VPS28-209ENST00000528142 NCOA5Q9HCD5 579 aaKnown RBP24.38■■□□□ 1.49
VPS28-209ENST00000528142 GGA1Q9UJY5 639 aa24.38■■□□□ 1.49
VPS28-209ENST00000528142 UFL1O94874 794 aa24.37■■□□□ 1.49
VPS28-209ENST00000528142 TMC4Q7Z404 712 aa24.37■■□□□ 1.49
VPS28-209ENST00000528142 HPS5Q9UPZ3 1129 aa24.37■■□□□ 1.49
VPS28-209ENST00000528142 KLF18A0A0U1RQI7 1052 aa24.36■■□□□ 1.49
VPS28-209ENST00000528142 SH2B2O14492 632 aaPredicted RBP24.36■■□□□ 1.49
VPS28-209ENST00000528142 HMGN5P82970 282 aaKnown RBP24.36■■□□□ 1.49
VPS28-209ENST00000528142 SPTY2D1Q68D10 685 aaPredicted RBP24.36■■□□□ 1.49
VPS28-209ENST00000528142 WDR66Q8TBY9 1149 aa24.36■■□□□ 1.49
VPS28-209ENST00000528142 CNNM2Q9H8M5 875 aa24.36■■□□□ 1.49
VPS28-209ENST00000528142 ANGEL1Q9UNK9 670 aaKnown RBP24.36■■□□□ 1.49
VPS28-209ENST00000528142 FSD2A1L4K1 749 aa24.35■■□□□ 1.49
VPS28-209ENST00000528142 PTPDC1A2A3K4 754 aa24.35■■□□□ 1.49
VPS28-209ENST00000528142 SRGNP10124 158 aa24.35■■□□□ 1.49
VPS28-209ENST00000528142 SP8Q8IXZ3 490 aa24.35■■□□□ 1.49
VPS28-209ENST00000528142 IGDCC4Q8TDY8 1250 aa24.35■■□□□ 1.49
VPS28-209ENST00000528142 DDX11Q96FC9 970 aa24.35■■□□□ 1.49
VPS28-209ENST00000528142 TMEM87BQ96K49 555 aa24.35■■□□□ 1.49
VPS28-209ENST00000528142 ANAPC4Q9UJX5 808 aa24.35■■□□□ 1.49
VPS28-209ENST00000528142 NAP1L2Q9ULW6 460 aaPredicted RBP24.35■■□□□ 1.49
VPS28-209ENST00000528142 JAG2Q9Y219 1238 aa24.35■■□□□ 1.49
VPS28-209ENST00000528142 PPARAQ07869 468 aa24.35■■□□□ 1.49
VPS28-209ENST00000528142 MFSD6Q6ZSS7 791 aa24.35■■□□□ 1.49
VPS28-209ENST00000528142 USP48Q86UV5 1035 aa24.35■■□□□ 1.49
VPS28-209ENST00000528142 KRT23Q9C075 422 aa24.35■■□□□ 1.49
VPS28-209ENST00000528142 GDPD2Q9HCC8 539 aa24.35■■□□□ 1.49
VPS28-209ENST00000528142 ZSWIM5Q9P217 1185 aa24.35■■□□□ 1.49
VPS28-209ENST00000528142 POLLQ9UGP5 575 aa24.35■■□□□ 1.49
VPS28-209ENST00000528142 CNPY2Q9Y2B0 182 aa24.35■■□□□ 1.49
VPS28-209ENST00000528142 GIMAP6Q6P9H5 292 aa24.34■■□□□ 1.49
VPS28-209ENST00000528142 TBC1D16Q8TBP0 767 aa24.34■■□□□ 1.49
VPS28-209ENST00000528142 CD209Q9NNX6 404 aa24.34■■□□□ 1.49
VPS28-209ENST00000528142 PPEF1O14829 653 aaPredicted RBP24.33■■□□□ 1.49
VPS28-209ENST00000528142 IL1R1P14778 569 aa24.33■■□□□ 1.49
VPS28-209ENST00000528142 PARP3Q9Y6F1 533 aa24.33■■□□□ 1.49
VPS28-209ENST00000528142 GOLGA8BA8MQT2 603 aa24.33■■□□□ 1.48
VPS28-209ENST00000528142 KDM4AO75164 1064 aa24.33■■□□□ 1.48
VPS28-209ENST00000528142 NPR1P16066 1061 aa24.33■■□□□ 1.48
VPS28-209ENST00000528142 FAM184AQ8NB25 1140 aa24.33■■□□□ 1.48
VPS28-209ENST00000528142 ATP6V0A2Q9Y487 856 aa24.33■■□□□ 1.48
VPS28-209ENST00000528142 MYH13Q9UKX3 1938 aa24.33■■□□□ 1.48
VPS28-209ENST00000528142 MBD3O95983 291 aa24.32■■□□□ 1.48
VPS28-209ENST00000528142 DNM1Q05193 864 aaKnown RBP24.32■■□□□ 1.48
VPS28-209ENST00000528142 RNF41Q9H4P4 317 aaPredicted RBP24.32■■□□□ 1.48
VPS28-209ENST00000528142 NCLP19338 710 aaKnown RBP24.31■■□□□ 1.48
VPS28-209ENST00000528142 PDE6BP35913 854 aa24.31■■□□□ 1.48
VPS28-209ENST00000528142 SGMS1Q86VZ5 419 aa24.31■■□□□ 1.48
VPS28-209ENST00000528142 LY9Q9HBG7 655 aa24.31■■□□□ 1.48
VPS28-209ENST00000528142 SENP2Q9HC62 589 aa24.31■■□□□ 1.48
VPS28-209ENST00000528142 AATFQ9NY61 560 aaKnown RBP eCLIP24.31■■□□□ 1.486e-6■■■■□ 25.6
VPS28-209ENST00000528142 LRRC37AA6NMS7 1700 aa24.31■■□□□ 1.48
VPS28-209ENST00000528142 COL11A2P13942 1736 aaPredicted RBP24.31■■□□□ 1.48
VPS28-209ENST00000528142 LDHBP07195 334 aaKnown RBP24.31■■□□□ 1.48
VPS28-209ENST00000528142 FDPSP14324 419 aaKnown RBP24.31■■□□□ 1.48
VPS28-209ENST00000528142 LIFRP42702 1097 aa24.31■■□□□ 1.48
VPS28-209ENST00000528142 CAVIN1Q6NZI2 390 aaKnown RBP24.31■■□□□ 1.48
VPS28-209ENST00000528142 FERMT3Q86UX7 667 aa24.31■■□□□ 1.48
VPS28-209ENST00000528142 DZIP1Q86YF9 867 aaKnown RBP24.31■■□□□ 1.48
VPS28-209ENST00000528142 MAST2Q6P0Q8 1798 aa24.3■■□□□ 1.48
VPS28-209ENST00000528142 LTBP1Q14766 1721 aa24.3■■□□□ 1.48
VPS28-209ENST00000528142 DHX16O60231 1041 aaKnown RBP24.3■■□□□ 1.48
VPS28-209ENST00000528142 MTA3Q9BTC8 594 aa24.3■■□□□ 1.48
VPS28-209ENST00000528142 KIF3AQ9Y496 699 aa24.3■■□□□ 1.48
VPS28-209ENST00000528142 MINDY4BA8MYZ0 360 aa24.29■■□□□ 1.48
VPS28-209ENST00000528142 GADD45BO75293 160 aaPredicted RBP24.29■■□□□ 1.48
VPS28-209ENST00000528142 GRIK5Q16478 980 aa24.29■■□□□ 1.48
VPS28-209ENST00000528142 TMEM67Q5HYA8 995 aa24.29■■□□□ 1.48
VPS28-209ENST00000528142 CTR9Q6PD62 1173 aa24.29■■□□□ 1.48
VPS28-209ENST00000528142 CRNKL1Q9BZJ0 848 aaKnown RBP24.29■■□□□ 1.48
VPS28-209ENST00000528142 GOLGA6L3A6NEY3 463 aa24.28■■□□□ 1.48
VPS28-209ENST00000528142 SMIM22K7EJ46 135 aa24.28■■□□□ 1.48
VPS28-209ENST00000528142 APOA5Q6Q788 366 aa24.28■■□□□ 1.48
VPS28-209ENST00000528142 FGRP09769 529 aa24.28■■□□□ 1.48
VPS28-209ENST00000528142 ALDH1B1P30837 517 aa24.28■■□□□ 1.48
VPS28-209ENST00000528142 RESTQ13127 1097 aa24.28■■□□□ 1.48
VPS28-209ENST00000528142 RAB11FIP4Q86YS3 637 aa24.28■■□□□ 1.48
VPS28-209ENST00000528142 DCP1AQ9NPI6 582 aaPredicted RBP24.28■■□□□ 1.48
VPS28-209ENST00000528142 ATP8A2Q9NTI2 1148 aa24.28■■□□□ 1.48
VPS28-209ENST00000528142 ISY1Q9ULR0 285 aaKnown RBP24.28■■□□□ 1.48
VPS28-209ENST00000528142 H3BQV1 296 aa24.27■■□□□ 1.48
VPS28-209ENST00000528142 IFIT3O14879 490 aaKnown RBP24.27■■□□□ 1.48
VPS28-209ENST00000528142 RRP12Q5JTH9 1297 aaKnown RBP24.27■■□□□ 1.48
VPS28-209ENST00000528142 IFFO2Q5TF58 517 aa24.27■■□□□ 1.48
VPS28-209ENST00000528142 MASTLQ96GX5 879 aa24.27■■□□□ 1.48
Retrieved 100 of 20,778 RNA–protein pairs in 234.7 ms