RNA–Protein interactions for RNA: ENST00000526553.5

CD44-223, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 4

Gene CD44, Length 571 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-223ENST00000526553 C2CD4AQ8NCU7 369 aaPredicted RBP8.24□□□□□ -1.09
CD44-223ENST00000526553 CRELD1Q96HD1 420 aa8.24□□□□□ -1.09
CD44-223ENST00000526553 MRS2Q9HD23 443 aa8.24□□□□□ -1.09
CD44-223ENST00000526553 RAD18Q9NS91 495 aa8.24□□□□□ -1.09
CD44-223ENST00000526553 RAXQ9Y2V3 346 aa8.24□□□□□ -1.09
CD44-223ENST00000526553 PAGE1O75459 146 aa8.23□□□□□ -1.09
CD44-223ENST00000526553 CELA3AP09093 270 aa8.23□□□□□ -1.09
CD44-223ENST00000526553 CTSHP09668 335 aa8.23□□□□□ -1.09
CD44-223ENST00000526553 BMP6P22004 513 aa8.23□□□□□ -1.09
CD44-223ENST00000526553 ST13P50502 369 aaKnown RBP8.23□□□□□ -1.09
CD44-223ENST00000526553 KIF4BQ2VIQ3 1234 aa8.23□□□□□ -1.09
CD44-223ENST00000526553 SCARA3Q6AZY7 606 aa8.23□□□□□ -1.09
CD44-223ENST00000526553 CACNA2D2Q9NY47 1150 aa8.23□□□□□ -1.09
CD44-223ENST00000526553 ZNF862O60290 1169 aa8.22□□□□□ -1.09
CD44-223ENST00000526553 BMP3P12645 472 aa8.22□□□□□ -1.09
CD44-223ENST00000526553 DRD2P14416 443 aa8.22□□□□□ -1.09
CD44-223ENST00000526553 LRRC14Q15048 493 aa8.22□□□□□ -1.09
CD44-223ENST00000526553 AKAP4Q5JQC9 854 aa8.22□□□□□ -1.09
CD44-223ENST00000526553 KCNB2Q92953 911 aa8.22□□□□□ -1.09
CD44-223ENST00000526553 ZC3H12CQ9C0D7 883 aaKnown RBP8.22□□□□□ -1.09
CD44-223ENST00000526553 BCL11AQ9H165 835 aa8.22□□□□□ -1.09
CD44-223ENST00000526553 VTI1BQ9UEU0 232 aa8.22□□□□□ -1.09
CD44-223ENST00000526553 LIG1P18858 919 aa8.21□□□□□ -1.1
CD44-223ENST00000526553 ITGB7P26010 798 aa8.21□□□□□ -1.1
CD44-223ENST00000526553 TAF1CQ15572 869 aaPredicted RBP8.21□□□□□ -1.1
CD44-223ENST00000526553 CCDC85BQ15834 202 aaPredicted RBP8.21□□□□□ -1.1
CD44-223ENST00000526553 MEI1Q5TIA1 1274 aa8.21□□□□□ -1.1
CD44-223ENST00000526553 PCNX4Q63HM2 1172 aa8.21□□□□□ -1.1
CD44-223ENST00000526553 LLGL2Q6P1M3 1020 aa8.21□□□□□ -1.1
CD44-223ENST00000526553 GSX1Q9H4S2 264 aaPredicted RBP8.21□□□□□ -1.1
CD44-223ENST00000526553 CBX8Q9HC52 389 aa8.21□□□□□ -1.1
CD44-223ENST00000526553 STOML1Q9UBI4 398 aa8.21□□□□□ -1.1
CD44-223ENST00000526553 CYP8B1Q9UNU6 501 aa8.21□□□□□ -1.1
CD44-223ENST00000526553 AP4E1Q9UPM8 1137 aa8.21□□□□□ -1.1
CD44-223ENST00000526553 PCDHGC5Q9Y5F6 944 aa8.21□□□□□ -1.1
CD44-223ENST00000526553 ACTL7BQ9Y614 415 aa8.21□□□□□ -1.1
CD44-223ENST00000526553 USP31Q70CQ4 1352 aa8.21□□□□□ -1.1
CD44-223ENST00000526553 TRIM37O94972 964 aa8.2□□□□□ -1.1
CD44-223ENST00000526553 SLFN14P0C7P3 912 aa8.2□□□□□ -1.1
CD44-223ENST00000526553 ZNF16P17020 682 aaPredicted RBP8.2□□□□□ -1.1
CD44-223ENST00000526553 MAP4P27816 1152 aaKnown RBP8.2□□□□□ -1.1
CD44-223ENST00000526553 SGO2Q562F6 1265 aa8.2□□□□□ -1.1
CD44-223ENST00000526553 MAP1SQ66K74 1059 aaPredicted RBP8.2□□□□□ -1.1
CD44-223ENST00000526553 SLC51AQ86UW1 340 aa8.2□□□□□ -1.1
CD44-223ENST00000526553 CLEC10AQ8IUN9 316 aa8.2□□□□□ -1.1
CD44-223ENST00000526553 WDR89Q96FK6 387 aaPredicted RBP8.2□□□□□ -1.1
CD44-223ENST00000526553 FAM83CQ9BQN1 747 aa8.2□□□□□ -1.1
CD44-223ENST00000526553 NOC4LQ9BVI4 516 aaKnown RBP8.2□□□□□ -1.1
CD44-223ENST00000526553 YIPF2Q9BWQ6 316 aa8.2□□□□□ -1.1
CD44-223ENST00000526553 TMPRSS2O15393 492 aa8.19□□□□□ -1.1
CD44-223ENST00000526553 GSC2O15499 205 aa8.19□□□□□ -1.1
CD44-223ENST00000526553 FSTP19883 344 aa8.19□□□□□ -1.1
CD44-223ENST00000526553 USP11P51784 963 aa8.19□□□□□ -1.1
CD44-223ENST00000526553 RPS26P62854 115 aaKnown RBP8.19□□□□□ -1.1
CD44-223ENST00000526553 ID3Q02535 119 aa8.19□□□□□ -1.1
CD44-223ENST00000526553 MRPL58Q14197 206 aaKnown RBP8.19□□□□□ -1.1
CD44-223ENST00000526553 PRSS36Q5K4E3 855 aa8.19□□□□□ -1.1
CD44-223ENST00000526553 RASIP1Q5U651 963 aa8.19□□□□□ -1.1
CD44-223ENST00000526553 BEND4Q6ZU67 534 aa8.19□□□□□ -1.1
CD44-223ENST00000526553 GPBAR1Q8TDU6 330 aa8.19□□□□□ -1.1
CD44-223ENST00000526553 EZH1Q92800 747 aaPredicted RBP8.19□□□□□ -1.1
CD44-223ENST00000526553 KCNF1Q9H3M0 494 aa8.19□□□□□ -1.1
CD44-223ENST00000526553 C7orf69Q9H7B7 122 aa8.19□□□□□ -1.1
CD44-223ENST00000526553 CRIM1Q9NZV1 1036 aa8.19□□□□□ -1.1
CD44-223ENST00000526553 PPP1R9AQ9ULJ8 1098 aa8.19□□□□□ -1.1
CD44-223ENST00000526553 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP8.18□□□□□ -1.1
CD44-223ENST00000526553 RBM47A0AV96 593 aaKnown RBP8.18□□□□□ -1.1
CD44-223ENST00000526553 TTBK2Q6IQ55 1244 aa8.18□□□□□ -1.1
CD44-223ENST00000526553 CDPF1Q6NVV7 123 aa8.18□□□□□ -1.1
CD44-223ENST00000526553 DYMQ7RTS9 669 aa8.18□□□□□ -1.1
CD44-223ENST00000526553 GRIN3AQ8TCU5 1115 aa8.18□□□□□ -1.1
CD44-223ENST00000526553 ATXN3LQ9H3M9 355 aa8.18□□□□□ -1.1
CD44-223ENST00000526553 RLBP1P12271 317 aa8.17□□□□□ -1.1
CD44-223ENST00000526553 TRIM42Q8IWZ5 723 aa8.17□□□□□ -1.1
CD44-223ENST00000526553 ACSBG1Q96GR2 724 aa8.17□□□□□ -1.1
CD44-223ENST00000526553 FAM105AQ9NUU6 356 aa8.17□□□□□ -1.1
CD44-223ENST00000526553 IGLV1-40P01703 118 aa8.16□□□□□ -1.1
CD44-223ENST00000526553 RXRBP28702 533 aa8.16□□□□□ -1.1
CD44-223ENST00000526553 ASPAP45381 313 aa8.16□□□□□ -1.1
CD44-223ENST00000526553 LIG3P49916 1009 aa8.16□□□□□ -1.1
CD44-223ENST00000526553 RNF43Q68DV7 783 aa8.16□□□□□ -1.1
CD44-223ENST00000526553 FBLIM1Q8WUP2 373 aa8.16□□□□□ -1.1
CD44-223ENST00000526553 FANCD2OSQ96PS1 177 aa8.16□□□□□ -1.1
CD44-223ENST00000526553 ACSS3Q9H6R3 686 aa8.16□□□□□ -1.1
CD44-223ENST00000526553 FAM95CA0A1B0GW59 222 aa8.15□□□□□ -1.1
CD44-223ENST00000526553 HMX2A2RU54 273 aa8.15□□□□□ -1.1
CD44-223ENST00000526553 NFIAQ12857 509 aa8.15□□□□□ -1.1
CD44-223ENST00000526553 MAP7Q14244 749 aa8.15□□□□□ -1.1
CD44-223ENST00000526553 ZC3H12AQ5D1E8 599 aaKnown RBP8.15□□□□□ -1.1
CD44-223ENST00000526553 MPRIPQ6WCQ1 1025 aa8.15□□□□□ -1.1
CD44-223ENST00000526553 AGMOQ6ZNB7 445 aa8.15□□□□□ -1.1
CD44-223ENST00000526553 RAB6AP20340 208 aa8.14□□□□□ -1.11
CD44-223ENST00000526553 ERVK-24P63145 666 aa8.14□□□□□ -1.11
CD44-223ENST00000526553 PAOXQ6QHF9 649 aa8.14□□□□□ -1.11
CD44-223ENST00000526553 GAL3ST3Q96A11 431 aa8.14□□□□□ -1.11
CD44-223ENST00000526553 DBNDD2Q9BQY9 259 aa8.14□□□□□ -1.11
CD44-223ENST00000526553 DISC1Q9NRI5 854 aa8.14□□□□□ -1.11
CD44-223ENST00000526553 RGS22Q8NE09 1264 aa8.13□□□□□ -1.11
CD44-223ENST00000526553 SEMA6CQ9H3T2 930 aa8.13□□□□□ -1.11
CD44-223ENST00000526553 PIDD1Q9HB75 910 aa8.13□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms