RNA–Protein interactions for RNA: ENST00000515460.5

NUP54-218, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 849 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-218ENST00000515460 PLEKHD1A6NEE1 506 aa8.17□□□□□ -1.1
NUP54-218ENST00000515460 RBM6P78332 1123 aaKnown RBP8.17□□□□□ -1.1
NUP54-218ENST00000515460 PDE4CQ08493 712 aa8.17□□□□□ -1.1
NUP54-218ENST00000515460 SF3B2Q13435 895 aaKnown RBP8.17□□□□□ -1.1
NUP54-218ENST00000515460 HGSNATQ68CP4 663 aa8.17□□□□□ -1.1
NUP54-218ENST00000515460 PMEPA1Q969W9 287 aa8.17□□□□□ -1.1
NUP54-218ENST00000515460 MYRFLQ96LU7 910 aa8.17□□□□□ -1.1
NUP54-218ENST00000515460 OSMRQ99650 979 aa8.17□□□□□ -1.1
NUP54-218ENST00000515460 CHRDQ9H2X0 955 aa8.17□□□□□ -1.1
NUP54-218ENST00000515460 KCNF1Q9H3M0 494 aa8.17□□□□□ -1.1
NUP54-218ENST00000515460 FAM13AO94988 1023 aa8.16□□□□□ -1.1
NUP54-218ENST00000515460 CD97P48960 835 aa8.16□□□□□ -1.1
NUP54-218ENST00000515460 ZNF142P52746 1687 aaPredicted RBP8.16□□□□□ -1.1
NUP54-218ENST00000515460 NFIAQ12857 509 aa8.16□□□□□ -1.1
NUP54-218ENST00000515460 UVSSAQ2YD98 709 aa8.16□□□□□ -1.1
NUP54-218ENST00000515460 MYO3AQ8NEV4 1616 aa8.16□□□□□ -1.1
NUP54-218ENST00000515460 WNT8BQ93098 351 aa8.16□□□□□ -1.1
NUP54-218ENST00000515460 OSGEPQ9NPF4 335 aa8.16□□□□□ -1.1
NUP54-218ENST00000515460 CTTNBP2Q8WZ74 1663 aa8.15□□□□□ -1.1
NUP54-218ENST00000515460 NUP153P49790 1475 aaKnown RBP8.15□□□□□ -1.1
NUP54-218ENST00000515460 EREGO14944 169 aa8.15□□□□□ -1.1
NUP54-218ENST00000515460 COBLO75128 1261 aa8.15□□□□□ -1.1
NUP54-218ENST00000515460 PHACTR2O75167 634 aa8.15□□□□□ -1.1
NUP54-218ENST00000515460 BMP3P12645 472 aa8.15□□□□□ -1.1
NUP54-218ENST00000515460 ARL4DP49703 201 aa8.15□□□□□ -1.1
NUP54-218ENST00000515460 RUSC1Q9BVN2 902 aa8.15□□□□□ -1.1
NUP54-218ENST00000515460 BCL9LQ86UU0 1499 aa8.14□□□□□ -1.11
NUP54-218ENST00000515460 NPATQ14207 1427 aa8.14□□□□□ -1.11
NUP54-218ENST00000515460 CARNS1A5YM72 827 aa8.14□□□□□ -1.11
NUP54-218ENST00000515460 EIF5BO60841 1220 aaKnown RBP8.14□□□□□ -1.11
NUP54-218ENST00000515460 TNFRSF21O75509 655 aa8.14□□□□□ -1.11
NUP54-218ENST00000515460 ABL1P00519 1130 aa8.14□□□□□ -1.11
NUP54-218ENST00000515460 PREPP48147 710 aa8.14□□□□□ -1.11
NUP54-218ENST00000515460 C19orf57Q0VDD7 668 aa8.14□□□□□ -1.11
NUP54-218ENST00000515460 RNF43Q68DV7 783 aa8.14□□□□□ -1.11
NUP54-218ENST00000515460 ANKRD34AQ69YU3 496 aa8.14□□□□□ -1.11
NUP54-218ENST00000515460 FDX2Q6P4F2 183 aa8.14□□□□□ -1.11
NUP54-218ENST00000515460 ZDHHC13Q8IUH4 622 aa8.14□□□□□ -1.11
NUP54-218ENST00000515460 FAM20CQ8IXL6 584 aa8.14□□□□□ -1.11
NUP54-218ENST00000515460 TMEM102Q8N9M5 508 aaPredicted RBP8.14□□□□□ -1.11
NUP54-218ENST00000515460 ASAP3Q8TDY4 903 aa8.14□□□□□ -1.11
NUP54-218ENST00000515460 NXPE3Q969Y0 559 aa8.14□□□□□ -1.11
NUP54-218ENST00000515460 ZKSCAN3Q9BRR0 538 aa8.14□□□□□ -1.11
NUP54-218ENST00000515460 RNF208Q9H0X6 261 aa8.14□□□□□ -1.11
NUP54-218ENST00000515460 SOX13Q9UN79 622 aa8.14□□□□□ -1.11
NUP54-218ENST00000515460 PHLPP1O60346 1717 aa8.14□□□□□ -1.11
NUP54-218ENST00000515460 POLR1AO95602 1720 aaPredicted RBP8.13□□□□□ -1.11
NUP54-218ENST00000515460 NPR3P17342 541 aa8.13□□□□□ -1.11
NUP54-218ENST00000515460 USP5P45974 858 aa8.13□□□□□ -1.11
NUP54-218ENST00000515460 IKBKEQ14164 716 aa8.13□□□□□ -1.11
NUP54-218ENST00000515460 PHLDB3Q6NSJ2 640 aa8.13□□□□□ -1.11
NUP54-218ENST00000515460 BEND4Q6ZU67 534 aa8.13□□□□□ -1.11
NUP54-218ENST00000515460 CLEC10AQ8IUN9 316 aa8.13□□□□□ -1.11
NUP54-218ENST00000515460 BSNDQ8WZ55 320 aa8.13□□□□□ -1.11
NUP54-218ENST00000515460 FAM83CQ9BQN1 747 aa8.13□□□□□ -1.11
NUP54-218ENST00000515460 ANO2Q9NQ90 1003 aa8.13□□□□□ -1.11
NUP54-218ENST00000515460 FOXD3Q9UJU5 478 aaPredicted RBP8.13□□□□□ -1.11
NUP54-218ENST00000515460 SAMD9Q5K651 1589 aa8.13□□□□□ -1.11
NUP54-218ENST00000515460 ZMYM3Q14202 1370 aa8.12□□□□□ -1.11
NUP54-218ENST00000515460 SOX1O00570 391 aaPredicted RBP8.12□□□□□ -1.11
NUP54-218ENST00000515460 FKBP4Q02790 459 aaKnown RBP eCLIP8.12□□□□□ -1.11
NUP54-218ENST00000515460 EHHADHQ08426 723 aa8.12□□□□□ -1.11
NUP54-218ENST00000515460 DBNDD2Q9BQY9 259 aa8.12□□□□□ -1.11
NUP54-218ENST00000515460 USP26Q9BXU7 913 aa8.12□□□□□ -1.11
NUP54-218ENST00000515460 CDK13Q14004 1512 aaKnown RBP8.12□□□□□ -1.11
NUP54-218ENST00000515460 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP8.12□□□□□ -1.115e-6■□□□□ 11
NUP54-218ENST00000515460 XIRP1Q702N8 1843 aaKnown RBP8.12□□□□□ -1.11
NUP54-218ENST00000515460 SPATA31A6Q5VVP1 1343 aa8.11□□□□□ -1.11
NUP54-218ENST00000515460 GAS2O43903 313 aaKnown RBP8.11□□□□□ -1.11
NUP54-218ENST00000515460 EDN3P14138 238 aa8.11□□□□□ -1.11
NUP54-218ENST00000515460 PPP1R3FQ6ZSY5 799 aaPredicted RBP8.11□□□□□ -1.11
NUP54-218ENST00000515460 VN1R5Q7Z5H4 357 aa8.11□□□□□ -1.11
NUP54-218ENST00000515460 C12orf50Q8NA57 414 aaPredicted RBP8.11□□□□□ -1.11
NUP54-218ENST00000515460 LATS2Q9NRM7 1088 aa8.11□□□□□ -1.11
NUP54-218ENST00000515460 EGFL7Q9UHF1 273 aa8.11□□□□□ -1.11
NUP54-218ENST00000515460 TIMELESSQ9UNS1 1208 aa8.11□□□□□ -1.11
NUP54-218ENST00000515460 CAMTA1Q9Y6Y1 1673 aa8.11□□□□□ -1.11
NUP54-218ENST00000515460 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP8.1□□□□□ -1.11
NUP54-218ENST00000515460 GRIK1P39086 918 aa8.1□□□□□ -1.11
NUP54-218ENST00000515460 NUTM2GQ5VZR2 741 aa8.1□□□□□ -1.11
NUP54-218ENST00000515460 MCTP1Q6DN14 999 aa8.1□□□□□ -1.11
NUP54-218ENST00000515460 SHKBP1Q8TBC3 707 aa8.1□□□□□ -1.11
NUP54-218ENST00000515460 SNX29Q8TEQ0 813 aa8.1□□□□□ -1.11
NUP54-218ENST00000515460 CCDC87Q9NVE4 849 aa8.1□□□□□ -1.11
NUP54-218ENST00000515460 EEA1Q15075 1411 aa8.1□□□□□ -1.11
NUP54-218ENST00000515460 SCAPERQ9BY12 1400 aa8.1□□□□□ -1.11
NUP54-218ENST00000515460 DNMT1P26358 1616 aaKnown RBP8.1□□□□□ -1.11
NUP54-218ENST00000515460 PRR19A6NJB7 356 aa8.09□□□□□ -1.11
NUP54-218ENST00000515460 FZD6O60353 706 aa8.09□□□□□ -1.11
NUP54-218ENST00000515460 POLR3DP05423 398 aaPredicted RBP8.09□□□□□ -1.11
NUP54-218ENST00000515460 ZNF211Q13398 564 aaPredicted RBP8.09□□□□□ -1.11
NUP54-218ENST00000515460 R3HDM1Q15032 1099 aaKnown RBP8.09□□□□□ -1.11
NUP54-218ENST00000515460 NPHP4O75161 1426 aaPredicted RBP8.09□□□□□ -1.11
NUP54-218ENST00000515460 SYNMO15061 1565 aa8.09□□□□□ -1.11
NUP54-218ENST00000515460 KIAA1324LA8MWY0 1029 aaPredicted RBP8.08□□□□□ -1.12
NUP54-218ENST00000515460 WDR64B1ANS9 1081 aa8.08□□□□□ -1.12
NUP54-218ENST00000515460 MAP4P27816 1152 aaKnown RBP8.08□□□□□ -1.12
NUP54-218ENST00000515460 SGO2Q562F6 1265 aa8.08□□□□□ -1.12
NUP54-218ENST00000515460 MFSD14AQ96MC6 490 aa8.08□□□□□ -1.12
NUP54-218ENST00000515460 OAS3Q9Y6K5 1087 aaKnown RBP8.08□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms