RNA–Protein interactions for RNA: ENST00000514987.5

NUP54-217, Transcript of nucleoporin 54, humanhuman

TSL 2 BASIC

Gene NUP54, Length 1,563 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-217ENST00000514987 RCAN1P53805 252 aa17.28■□□□□ 0.36
NUP54-217ENST00000514987 KIF23Q02241 960 aaPredicted RBP17.28■□□□□ 0.36
NUP54-217ENST00000514987 TRIM29Q14134 588 aa17.28■□□□□ 0.36
NUP54-217ENST00000514987 UBE4AQ14139 1066 aa17.28■□□□□ 0.36
NUP54-217ENST00000514987 NFXL1Q6ZNB6 911 aa17.28■□□□□ 0.36
NUP54-217ENST00000514987 MFSD6Q6ZSS7 791 aa17.28■□□□□ 0.36
NUP54-217ENST00000514987 ANKRD18AQ8IVF6 992 aa17.28■□□□□ 0.36
NUP54-217ENST00000514987 STAG1Q8WVM7 1258 aa17.28■□□□□ 0.36
NUP54-217ENST00000514987 NAT10Q9H0A0 1025 aaKnown RBP17.28■□□□□ 0.36
NUP54-217ENST00000514987 GOLPH3LQ9H4A5 285 aa17.28■□□□□ 0.36
NUP54-217ENST00000514987 PCDHA7Q9UN72 937 aa17.28■□□□□ 0.36
NUP54-217ENST00000514987 GSG1L2A8MUP6 293 aa17.27■□□□□ 0.35
NUP54-217ENST00000514987 AP5Z1O43299 807 aa17.27■□□□□ 0.35
NUP54-217ENST00000514987 CDC25BP30305 580 aa17.27■□□□□ 0.35
NUP54-217ENST00000514987 FMR1NBQ8N0W7 255 aaPredicted RBP17.27■□□□□ 0.35
NUP54-217ENST00000514987 JMYQ8N9B5 988 aa17.27■□□□□ 0.35
NUP54-217ENST00000514987 ALG1Q9BT22 464 aa17.27■□□□□ 0.35
NUP54-217ENST00000514987 FTOQ9C0B1 505 aaKnown RBP eCLIP17.27■□□□□ 0.35
NUP54-217ENST00000514987 DNAJC25Q9H1X3 360 aa17.27■□□□□ 0.35
NUP54-217ENST00000514987 LY9Q9HBG7 655 aa17.27■□□□□ 0.35
NUP54-217ENST00000514987 LRP2BPQ9P2M1 347 aa17.27■□□□□ 0.35
NUP54-217ENST00000514987 ZNF804BA4D1E1 1349 aa17.26■□□□□ 0.35
NUP54-217ENST00000514987 NEDD4P46934 1319 aa17.26■□□□□ 0.35
NUP54-217ENST00000514987 CCDC69A6NI79 296 aa17.26■□□□□ 0.35
NUP54-217ENST00000514987 GOLGA8AA7E2F4 631 aa17.26■□□□□ 0.35
NUP54-217ENST00000514987 IFIT3O14879 490 aaKnown RBP17.26■□□□□ 0.35
NUP54-217ENST00000514987 IARSP41252 1262 aaKnown RBP17.26■□□□□ 0.35
NUP54-217ENST00000514987 TDO2P48775 406 aa17.26■□□□□ 0.35
NUP54-217ENST00000514987 BCAMP50895 628 aa17.26■□□□□ 0.35
NUP54-217ENST00000514987 ANO1Q5XXA6 986 aa17.26■□□□□ 0.35
NUP54-217ENST00000514987 SARM1Q6SZW1 724 aa17.26■□□□□ 0.35
NUP54-217ENST00000514987 ARMT1Q9H993 441 aa17.26■□□□□ 0.35
NUP54-217ENST00000514987 EPB41L4AQ9HCS5 686 aaPredicted RBP17.26■□□□□ 0.35
NUP54-217ENST00000514987 SPTLC3Q9NUV7 552 aa17.26■□□□□ 0.35
NUP54-217ENST00000514987 SLC12A7Q9Y666 1083 aa17.26■□□□□ 0.35
NUP54-217ENST00000514987 CNTNAP4Q9C0A0 1308 aa17.25■□□□□ 0.35
NUP54-217ENST00000514987 ERICH2A1L162 156 aa17.25■□□□□ 0.35
NUP54-217ENST00000514987 ZNF75DP51815 510 aa17.25■□□□□ 0.35
NUP54-217ENST00000514987 NOLC1Q14978 699 aaKnown RBP eCLIP17.25■□□□□ 0.35
NUP54-217ENST00000514987 SLC10A5Q5PT55 438 aa17.25■□□□□ 0.35
NUP54-217ENST00000514987 PLA2G4DQ86XP0 818 aa17.25■□□□□ 0.35
NUP54-217ENST00000514987 BSDC1Q9NW68 430 aaPredicted RBP17.25■□□□□ 0.35
NUP54-217ENST00000514987 R3HCC1Q9Y3T6 440 aaKnown RBP17.25■□□□□ 0.35
NUP54-217ENST00000514987 SLC4A4Q9Y6R1 1079 aa17.25■□□□□ 0.35
NUP54-217ENST00000514987 BCL9LQ86UU0 1499 aa17.25■□□□□ 0.35
NUP54-217ENST00000514987 CCDC196A0A1B0GTZ2 297 aa17.24■□□□□ 0.35
NUP54-217ENST00000514987 SEMA3EO15041 775 aa17.24■□□□□ 0.35
NUP54-217ENST00000514987 POLR3DP05423 398 aaPredicted RBP17.24■□□□□ 0.35
NUP54-217ENST00000514987 CMA1P23946 247 aa17.24■□□□□ 0.35
NUP54-217ENST00000514987 SSRP1Q08945 709 aaKnown RBP17.24■□□□□ 0.35
NUP54-217ENST00000514987 CAVIN4Q5BKX8 364 aa17.24■□□□□ 0.35
NUP54-217ENST00000514987 TMED8Q6PL24 325 aaPredicted RBP17.24■□□□□ 0.35
NUP54-217ENST00000514987 CEP57L1Q8IYX8 460 aa17.24■□□□□ 0.35
NUP54-217ENST00000514987 SDF4Q9BRK5 362 aa17.24■□□□□ 0.35
NUP54-217ENST00000514987 TRIM5Q9C035 493 aa17.24■□□□□ 0.35
NUP54-217ENST00000514987 NYXQ9GZU5 481 aa17.24■□□□□ 0.35
NUP54-217ENST00000514987 TTC12Q9H892 705 aaPredicted RBP17.24■□□□□ 0.35
NUP54-217ENST00000514987 ZSWIM5Q9P217 1185 aa17.24■□□□□ 0.35
NUP54-217ENST00000514987 CLIC4Q9Y696 253 aa17.24■□□□□ 0.35
NUP54-217ENST00000514987 NUTM2BA6NNL0 878 aaPredicted RBP17.23■□□□□ 0.35
NUP54-217ENST00000514987 NUTM2EB1AL46 878 aaPredicted RBP17.23■□□□□ 0.35
NUP54-217ENST00000514987 PPP6R2O75170 966 aa17.23■□□□□ 0.35
NUP54-217ENST00000514987 IFNAR1P17181 557 aa17.23■□□□□ 0.35
NUP54-217ENST00000514987 GNL2Q13823 731 aaKnown RBP17.23■□□□□ 0.35
NUP54-217ENST00000514987 SLC39A14Q15043 492 aa17.23■□□□□ 0.35
NUP54-217ENST00000514987 IQCB1Q15051 598 aa17.23■□□□□ 0.35
NUP54-217ENST00000514987 PPP2R5BQ15173 497 aa17.23■□□□□ 0.35
NUP54-217ENST00000514987 ZRSR1Q15695 479 aaKnown RBP17.23■□□□□ 0.35
NUP54-217ENST00000514987 RC3H1Q5TC82 1133 aaKnown RBP17.23■□□□□ 0.35
NUP54-217ENST00000514987 KRT40Q6A162 431 aa17.23■□□□□ 0.35
NUP54-217ENST00000514987 OTUD7BQ6GQQ9 843 aa17.23■□□□□ 0.35
NUP54-217ENST00000514987 MICU3Q86XE3 530 aa17.23■□□□□ 0.35
NUP54-217ENST00000514987 NUTM2AQ8IVF1 878 aaPredicted RBP17.23■□□□□ 0.35
NUP54-217ENST00000514987 ANAPC4Q9UJX5 808 aa17.23■□□□□ 0.35
NUP54-217ENST00000514987 A0A1B0GUL6 1792 aa17.23■□□□□ 0.35
NUP54-217ENST00000514987 PPFIA3O75145 1194 aa17.23■□□□□ 0.35
NUP54-217ENST00000514987 FMNL1O95466 1100 aaPredicted RBP17.23■□□□□ 0.35
NUP54-217ENST00000514987 PCP11498 1178 aaKnown RBP17.23■□□□□ 0.35
NUP54-217ENST00000514987 NTRK3Q16288 839 aa17.23■□□□□ 0.35
NUP54-217ENST00000514987 LCORLQ8N3X6 602 aa17.23■□□□□ 0.35
NUP54-217ENST00000514987 TIGD1Q96MW7 591 aa17.23■□□□□ 0.35
NUP54-217ENST00000514987 DENND2AQ9ULE3 1009 aa17.23■□□□□ 0.35
NUP54-217ENST00000514987 PDS5AQ29RF7 1337 aaKnown RBP17.22■□□□□ 0.35
NUP54-217ENST00000514987 SCN7AQ01118 1682 aa17.22■□□□□ 0.35
NUP54-217ENST00000514987 MAGEB6P1A0A0J9YX57 407 aa17.22■□□□□ 0.35
NUP54-217ENST00000514987 BECN2A8MW95 431 aa17.22■□□□□ 0.35
NUP54-217ENST00000514987 ZBTB22O15209 634 aa17.22■□□□□ 0.35
NUP54-217ENST00000514987 TOM1O60784 492 aa17.22■□□□□ 0.35
NUP54-217ENST00000514987 CYP7A1P22680 504 aa17.22■□□□□ 0.35
NUP54-217ENST00000514987 U2AF2P26368 475 aaKnown RBP eCLIP17.22■□□□□ 0.355e-7■□□□□ 8.9
NUP54-217ENST00000514987 CDC27P30260 824 aa17.22■□□□□ 0.35
NUP54-217ENST00000514987 CTDSPL2Q05D32 466 aa17.22■□□□□ 0.35
NUP54-217ENST00000514987 WTAPQ15007 396 aa17.22■□□□□ 0.35
NUP54-217ENST00000514987 ERFEQ4G0M1 354 aa17.22■□□□□ 0.35
NUP54-217ENST00000514987 AEBP2Q6ZN18 517 aaPredicted RBP17.22■□□□□ 0.35
NUP54-217ENST00000514987 VPS37DQ86XT2 251 aa17.22■□□□□ 0.35
NUP54-217ENST00000514987 RAB11FIP4Q86YS3 637 aa17.22■□□□□ 0.35
NUP54-217ENST00000514987 DRC7Q8IY82 874 aa17.22■□□□□ 0.35
NUP54-217ENST00000514987 TRIM22Q8IYM9 498 aa17.22■□□□□ 0.35
NUP54-217ENST00000514987 KIAA1524Q8TCG1 905 aa17.22■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms