RNA–Protein interactions for RNA: ENST00000512946.5

LIMCH1-217, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,057 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-217ENST00000512946 MCM7P33993 719 aa12.51□□□□□ -0.41
LIMCH1-217ENST00000512946 MMS22LQ6ZRQ5 1243 aa12.51□□□□□ -0.41
LIMCH1-217ENST00000512946 CCDC84Q86UT8 332 aaPredicted RBP12.51□□□□□ -0.41
LIMCH1-217ENST00000512946 YY1AP1Q9H869 796 aa12.51□□□□□ -0.41
LIMCH1-217ENST00000512946 WTAPQ15007 396 aa12.51□□□□□ -0.41
LIMCH1-217ENST00000512946 LIN9Q5TKA1 542 aa12.51□□□□□ -0.41
LIMCH1-217ENST00000512946 TRIM68Q6AZZ1 485 aa12.51□□□□□ -0.41
LIMCH1-217ENST00000512946 RGS22Q8NE09 1264 aa12.51□□□□□ -0.41
LIMCH1-217ENST00000512946 CXorf38Q8TB03 319 aa12.51□□□□□ -0.41
LIMCH1-217ENST00000512946 MORC4Q8TE76 937 aa12.51□□□□□ -0.41
LIMCH1-217ENST00000512946 RABGGTAQ92696 567 aa12.51□□□□□ -0.41
LIMCH1-217ENST00000512946 RUNDC3BQ96NL0 473 aa12.51□□□□□ -0.41
LIMCH1-217ENST00000512946 TSC22D3Q99576 134 aa12.51□□□□□ -0.41
LIMCH1-217ENST00000512946 ESYT1Q9BSJ8 1104 aa12.51□□□□□ -0.41
LIMCH1-217ENST00000512946 ABCF2Q9UG63 623 aa12.51□□□□□ -0.41
LIMCH1-217ENST00000512946 KLF18A0A0U1RQI7 1052 aa12.5□□□□□ -0.41
LIMCH1-217ENST00000512946 SPOPO43791 374 aa12.5□□□□□ -0.41
LIMCH1-217ENST00000512946 LMNAP02545 664 aaKnown RBP12.5□□□□□ -0.41
LIMCH1-217ENST00000512946 HSPA8P11142 646 aaKnown RBP12.5□□□□□ -0.41
LIMCH1-217ENST00000512946 HOXA7P31268 230 aaPredicted RBP12.5□□□□□ -0.41
LIMCH1-217ENST00000512946 LIG3P49916 1009 aa12.5□□□□□ -0.41
LIMCH1-217ENST00000512946 NBPF10Q6P3W6 841 aaKnown RBP12.5□□□□□ -0.41
LIMCH1-217ENST00000512946 RSPH3Q86UC2 560 aa12.5□□□□□ -0.41
LIMCH1-217ENST00000512946 CCDC82Q8N4S0 544 aa12.5□□□□□ -0.41
LIMCH1-217ENST00000512946 BBOF1Q8ND07 529 aa12.5□□□□□ -0.41
LIMCH1-217ENST00000512946 BRF1Q92994 677 aa12.5□□□□□ -0.41
LIMCH1-217ENST00000512946 CACYBPQ9HB71 228 aaKnown RBP12.5□□□□□ -0.41
LIMCH1-217ENST00000512946 GNAT3A8MTJ3 354 aa12.5□□□□□ -0.41
LIMCH1-217ENST00000512946 TRIM42Q8IWZ5 723 aa12.5□□□□□ -0.41
LIMCH1-217ENST00000512946 CCDC197Q8NCU1 140 aa12.5□□□□□ -0.41
LIMCH1-217ENST00000512946 TRIM6Q9C030 488 aaPredicted RBP12.5□□□□□ -0.41
LIMCH1-217ENST00000512946 ZNF652Q9Y2D9 606 aa12.5□□□□□ -0.41
LIMCH1-217ENST00000512946 WDR46O15213 610 aaKnown RBP12.5□□□□□ -0.41
LIMCH1-217ENST00000512946 KRT15P19012 456 aa12.5□□□□□ -0.41
LIMCH1-217ENST00000512946 PLCD1P51178 756 aa12.5□□□□□ -0.41
LIMCH1-217ENST00000512946 GEN1Q17RS7 908 aa12.5□□□□□ -0.41
LIMCH1-217ENST00000512946 NUTM2GQ5VZR2 741 aa12.5□□□□□ -0.41
LIMCH1-217ENST00000512946 CFAP61Q8NHU2 1237 aa12.5□□□□□ -0.41
LIMCH1-217ENST00000512946 DACT3Q96B18 629 aaPredicted RBP12.5□□□□□ -0.41
LIMCH1-217ENST00000512946 RBSNQ9H1K0 784 aa12.5□□□□□ -0.41
LIMCH1-217ENST00000512946 HAUS2Q9NVX0 235 aa12.5□□□□□ -0.41
LIMCH1-217ENST00000512946 MROH2BQ7Z745 1585 aa12.5□□□□□ -0.41
LIMCH1-217ENST00000512946 BTBD11A6QL63 1104 aa12.5□□□□□ -0.41
LIMCH1-217ENST00000512946 MAN1A2O60476 641 aa12.5□□□□□ -0.41
LIMCH1-217ENST00000512946 TRIM37O94972 964 aa12.5□□□□□ -0.41
LIMCH1-217ENST00000512946 PHBP35232 272 aa12.5□□□□□ -0.41
LIMCH1-217ENST00000512946 TBC1D8BQ0IIM8 1120 aa12.5□□□□□ -0.41
LIMCH1-217ENST00000512946 NMIQ13287 307 aaPredicted RBP12.5□□□□□ -0.41
LIMCH1-217ENST00000512946 RTN1Q16799 776 aa12.5□□□□□ -0.41
LIMCH1-217ENST00000512946 LRRC43Q8N309 656 aa12.5□□□□□ -0.41
LIMCH1-217ENST00000512946 TRIM58Q8NG06 486 aa12.5□□□□□ -0.41
LIMCH1-217ENST00000512946 ESR2Q92731 530 aa12.5□□□□□ -0.41
LIMCH1-217ENST00000512946 CLSTN2Q9H4D0 955 aa12.5□□□□□ -0.41
LIMCH1-217ENST00000512946 ARHGAP42A6NI28 874 aa12.49□□□□□ -0.41
LIMCH1-217ENST00000512946 CHUKO15111 745 aa12.49□□□□□ -0.41
LIMCH1-217ENST00000512946 TCP1P17987 556 aaKnown RBP12.49□□□□□ -0.41
LIMCH1-217ENST00000512946 ST13P4Q8IZP2 240 aaPredicted RBP12.49□□□□□ -0.41
LIMCH1-217ENST00000512946 SH3GL3Q99963 347 aa12.49□□□□□ -0.41
LIMCH1-217ENST00000512946 TYW1Q9NV66 732 aaKnown RBP12.49□□□□□ -0.41
LIMCH1-217ENST00000512946 KIAA1107Q9UPP5 1409 aa12.49□□□□□ -0.41
LIMCH1-217ENST00000512946 BAG3O95817 575 aa12.49□□□□□ -0.41
LIMCH1-217ENST00000512946 IFIT5Q13325 482 aaKnown RBP12.49□□□□□ -0.41
LIMCH1-217ENST00000512946 TRIM60Q495X7 471 aa12.49□□□□□ -0.41
LIMCH1-217ENST00000512946 MICU3Q86XE3 530 aa12.49□□□□□ -0.41
LIMCH1-217ENST00000512946 RTL9Q8NET4 1388 aa12.49□□□□□ -0.41
LIMCH1-217ENST00000512946 ARHGEF9O43307 516 aa12.49□□□□□ -0.41
LIMCH1-217ENST00000512946 PCYT1AP49585 367 aa12.49□□□□□ -0.41
LIMCH1-217ENST00000512946 NOP14P78316 857 aaKnown RBP12.49□□□□□ -0.41
LIMCH1-217ENST00000512946 RPS6KA1Q15418 735 aa12.49□□□□□ -0.41
LIMCH1-217ENST00000512946 STK38LQ9Y2H1 464 aa12.49□□□□□ -0.41
LIMCH1-217ENST00000512946 SAR1BQ9Y6B6 198 aa12.49□□□□□ -0.41
LIMCH1-217ENST00000512946 E9PMD0 336 aa12.49□□□□□ -0.41
LIMCH1-217ENST00000512946 TTC4O95801 387 aa12.49□□□□□ -0.41
LIMCH1-217ENST00000512946 PODNQ7Z5L7 613 aa12.49□□□□□ -0.41
LIMCH1-217ENST00000512946 NME8Q8N427 588 aa12.49□□□□□ -0.41
LIMCH1-217ENST00000512946 RBM42Q9BTD8 480 aaKnown RBP12.49□□□□□ -0.41
LIMCH1-217ENST00000512946 ZBTB12Q9Y330 459 aaPredicted RBP12.49□□□□□ -0.41
LIMCH1-217ENST00000512946 PALM3A6NDB9 673 aaPredicted RBP12.48□□□□□ -0.41
LIMCH1-217ENST00000512946 STARD3NLO95772 234 aa12.48□□□□□ -0.41
LIMCH1-217ENST00000512946 TNFAIP3P21580 790 aa12.48□□□□□ -0.41
LIMCH1-217ENST00000512946 MRFAP1L1Q96HT8 127 aa12.48□□□□□ -0.41
LIMCH1-217ENST00000512946 RILPQ96NA2 401 aa12.48□□□□□ -0.41
LIMCH1-217ENST00000512946 EPS15L1Q9UBC2 864 aa12.48□□□□□ -0.41
LIMCH1-217ENST00000512946 ANGPTL2Q9UKU9 493 aa12.48□□□□□ -0.41
LIMCH1-217ENST00000512946 BAG5Q9UL15 447 aa12.48□□□□□ -0.41
LIMCH1-217ENST00000512946 ATF3P18847 181 aa12.48□□□□□ -0.41
LIMCH1-217ENST00000512946 FANCCQ00597 558 aa12.48□□□□□ -0.41
LIMCH1-217ENST00000512946 ZNF449Q6P9G9 518 aa12.48□□□□□ -0.41
LIMCH1-217ENST00000512946 POLE3Q9NRF9 147 aa12.48□□□□□ -0.41
LIMCH1-217ENST00000512946 SMARCA5O60264 1052 aaPredicted RBP12.48□□□□□ -0.41
LIMCH1-217ENST00000512946 APOEP02649 317 aa12.48□□□□□ -0.41
LIMCH1-217ENST00000512946 MAGEA9P43362 315 aa12.48□□□□□ -0.41
LIMCH1-217ENST00000512946 RBM5P52756 815 aaKnown RBP eCLIP12.48□□□□□ -0.41
LIMCH1-217ENST00000512946 ABTB2Q8N961 1025 aa12.48□□□□□ -0.41
LIMCH1-217ENST00000512946 LLPHQ9BRT6 129 aaKnown RBP12.48□□□□□ -0.41
LIMCH1-217ENST00000512946 KIFC3Q9BVG8 833 aa12.48□□□□□ -0.41
LIMCH1-217ENST00000512946 C6orf50Q9HD87 102 aa12.48□□□□□ -0.41
LIMCH1-217ENST00000512946 CLTAP09496 248 aa12.48□□□□□ -0.41
LIMCH1-217ENST00000512946 MAGEA1P43355 309 aa12.48□□□□□ -0.41
LIMCH1-217ENST00000512946 GRK7Q8WTQ7 553 aa12.48□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms