RNA–Protein interactions for RNA: ENST00000507778.1

HMGB1P28-201, Transcript of high mobility group box 1 pseudogene 28, humanhuman

BASIC

Gene HMGB1P28, Length 552 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P28-201ENST00000507778 ZC3H12CQ9C0D7 883 aaKnown RBP6.4□□□□□ -1.38
HMGB1P28-201ENST00000507778 NRSN2Q9GZP1 204 aa6.4□□□□□ -1.38
HMGB1P28-201ENST00000507778 MKL2Q9ULH7 1088 aa6.4□□□□□ -1.38
HMGB1P28-201ENST00000507778 A0A0A0MRY4 1105 aa6.39□□□□□ -1.39
HMGB1P28-201ENST00000507778 GNB5O14775 395 aa6.39□□□□□ -1.39
HMGB1P28-201ENST00000507778 DDX3YO15523 660 aaKnown RBP6.39□□□□□ -1.39
HMGB1P28-201ENST00000507778 TRIM37O94972 964 aa6.39□□□□□ -1.39
HMGB1P28-201ENST00000507778 DNAJA1P31689 397 aaKnown RBP6.39□□□□□ -1.39
HMGB1P28-201ENST00000507778 HNRNPUQ00839 825 aaKnown RBP eCLIP6.39□□□□□ -1.39
HMGB1P28-201ENST00000507778 TRIM28Q13263 835 aaKnown RBP6.39□□□□□ -1.39
HMGB1P28-201ENST00000507778 SEPT6Q14141 434 aa6.39□□□□□ -1.39
HMGB1P28-201ENST00000507778 HP1BP3Q5SSJ5 553 aaPredicted RBP6.39□□□□□ -1.39
HMGB1P28-201ENST00000507778 BNC2Q6ZN30 1099 aaPredicted RBP6.39□□□□□ -1.39
HMGB1P28-201ENST00000507778 FBXO11Q86XK2 927 aa6.39□□□□□ -1.39
HMGB1P28-201ENST00000507778 RASGRP4Q8TDF6 673 aa6.39□□□□□ -1.39
HMGB1P28-201ENST00000507778 GATAD2BQ8WXI9 593 aa6.39□□□□□ -1.39
HMGB1P28-201ENST00000507778 TRIM11Q96F44 468 aa6.39□□□□□ -1.39
HMGB1P28-201ENST00000507778 GMLQ99445 158 aa6.39□□□□□ -1.39
HMGB1P28-201ENST00000507778 USP26Q9BXU7 913 aa6.39□□□□□ -1.39
HMGB1P28-201ENST00000507778 TANGO6Q9C0B7 1094 aa6.39□□□□□ -1.39
HMGB1P28-201ENST00000507778 UBP1Q9NZI7 540 aa6.39□□□□□ -1.39
HMGB1P28-201ENST00000507778 PRKAG2Q9UGJ0 569 aa6.39□□□□□ -1.39
HMGB1P28-201ENST00000507778 ROBO2Q9HCK4 1378 aa6.39□□□□□ -1.39
HMGB1P28-201ENST00000507778 IGSF3O75054 1194 aa6.38□□□□□ -1.39
HMGB1P28-201ENST00000507778 ECEL1O95672 775 aa6.38□□□□□ -1.39
HMGB1P28-201ENST00000507778 F13A1P00488 732 aa6.38□□□□□ -1.39
HMGB1P28-201ENST00000507778 APOBRQ0VD83 1088 aa6.38□□□□□ -1.39
HMGB1P28-201ENST00000507778 PDE3AQ14432 1141 aa6.38□□□□□ -1.39
HMGB1P28-201ENST00000507778 MPRIPQ6WCQ1 1025 aa6.38□□□□□ -1.39
HMGB1P28-201ENST00000507778 FMR1NBQ8N0W7 255 aaPredicted RBP6.38□□□□□ -1.39
HMGB1P28-201ENST00000507778 ACSBG1Q96GR2 724 aa6.38□□□□□ -1.39
HMGB1P28-201ENST00000507778 CCDC86Q9H6F5 360 aaKnown RBP6.38□□□□□ -1.39
HMGB1P28-201ENST00000507778 KRT82Q9NSB4 513 aa6.38□□□□□ -1.39
HMGB1P28-201ENST00000507778 PPP1R1BQ9UD71 204 aaPredicted RBP6.38□□□□□ -1.39
HMGB1P28-201ENST00000507778 LOC100289279A0A1B0GTE1 492 aa6.37□□□□□ -1.39
HMGB1P28-201ENST00000507778 FAM221AA4D161 298 aa6.37□□□□□ -1.39
HMGB1P28-201ENST00000507778 DLL1O00548 723 aa6.37□□□□□ -1.39
HMGB1P28-201ENST00000507778 ADAM11O75078 769 aa6.37□□□□□ -1.39
HMGB1P28-201ENST00000507778 CILPO75339 1184 aa6.37□□□□□ -1.39
HMGB1P28-201ENST00000507778 ATF4P18848 351 aaPredicted RBP6.37□□□□□ -1.39
HMGB1P28-201ENST00000507778 PTPN11Q06124 597 aaPredicted RBP6.37□□□□□ -1.39
HMGB1P28-201ENST00000507778 MPP2Q14168 576 aa6.37□□□□□ -1.39
HMGB1P28-201ENST00000507778 FOXD4L6Q3SYB3 417 aaPredicted RBP6.37□□□□□ -1.39
HMGB1P28-201ENST00000507778 FOXD4L3Q6VB84 417 aaPredicted RBP6.37□□□□□ -1.39
HMGB1P28-201ENST00000507778 BEND7Q8N7W2 519 aaPredicted RBP6.37□□□□□ -1.39
HMGB1P28-201ENST00000507778 GPBAR1Q8TDU6 330 aa6.37□□□□□ -1.39
HMGB1P28-201ENST00000507778 NKD1Q969G9 470 aa6.37□□□□□ -1.39
HMGB1P28-201ENST00000507778 GAL3ST3Q96A11 431 aa6.37□□□□□ -1.39
HMGB1P28-201ENST00000507778 SEC16BQ96JE7 1060 aa6.37□□□□□ -1.39
HMGB1P28-201ENST00000507778 CACNA2D2Q9NY47 1150 aa6.37□□□□□ -1.39
HMGB1P28-201ENST00000507778 KCNK4Q9NYG8 393 aa6.37□□□□□ -1.39
HMGB1P28-201ENST00000507778 PCDHA4Q9UN74 947 aa6.37□□□□□ -1.39
HMGB1P28-201ENST00000507778 TLR3O15455 904 aaKnown RBP6.36□□□□□ -1.39
HMGB1P28-201ENST00000507778 BPNT1O95861 308 aa6.36□□□□□ -1.39
HMGB1P28-201ENST00000507778 CTSBP07858 339 aa6.36□□□□□ -1.39
HMGB1P28-201ENST00000507778 ATP2B1P20020 1258 aa6.36□□□□□ -1.39
HMGB1P28-201ENST00000507778 LORP23490 312 aaPredicted RBP6.36□□□□□ -1.39
HMGB1P28-201ENST00000507778 CRKP46108 304 aa6.36□□□□□ -1.39
HMGB1P28-201ENST00000507778 COL9A2Q14055 689 aaPredicted RBP6.36□□□□□ -1.39
HMGB1P28-201ENST00000507778 DUOXA2Q1HG44 320 aa6.36□□□□□ -1.39
HMGB1P28-201ENST00000507778 CWF19L2Q2TBE0 894 aaKnown RBP6.36□□□□□ -1.39
HMGB1P28-201ENST00000507778 SEZ6Q53EL9 994 aa6.36□□□□□ -1.39
HMGB1P28-201ENST00000507778 PRRT3Q5FWE3 981 aa6.36□□□□□ -1.39
HMGB1P28-201ENST00000507778 PODNQ7Z5L7 613 aa6.36□□□□□ -1.39
HMGB1P28-201ENST00000507778 SLITRK4Q8IW52 837 aa6.36□□□□□ -1.39
HMGB1P28-201ENST00000507778 FBXO27Q8NI29 283 aa6.36□□□□□ -1.39
HMGB1P28-201ENST00000507778 BUD13Q9BRD0 619 aaKnown RBP eCLIP6.36□□□□□ -1.39
HMGB1P28-201ENST00000507778 LRRC3Q9BY71 257 aa6.36□□□□□ -1.39
HMGB1P28-201ENST00000507778 RAD18Q9NS91 495 aa6.36□□□□□ -1.39
HMGB1P28-201ENST00000507778 GINM1Q9NU53 330 aa6.36□□□□□ -1.39
HMGB1P28-201ENST00000507778 NOP53Q9NZM5 478 aaKnown RBP6.36□□□□□ -1.39
HMGB1P28-201ENST00000507778 EFR3BQ9Y2G0 817 aa6.36□□□□□ -1.39
HMGB1P28-201ENST00000507778 ZNF862O60290 1169 aa6.35□□□□□ -1.39
HMGB1P28-201ENST00000507778 SLFN14P0C7P3 912 aa6.35□□□□□ -1.39
HMGB1P28-201ENST00000507778 LIG1P18858 919 aa6.35□□□□□ -1.39
HMGB1P28-201ENST00000507778 NASPP49321 788 aaPredicted RBP6.35□□□□□ -1.39
HMGB1P28-201ENST00000507778 RPL6Q02878 288 aaKnown RBP6.35□□□□□ -1.39
HMGB1P28-201ENST00000507778 EXOSC6Q5RKV6 272 aaKnown RBP6.35□□□□□ -1.39
HMGB1P28-201ENST00000507778 IGF2-ASQ6U949 168 aa6.35□□□□□ -1.39
HMGB1P28-201ENST00000507778 FAM229AH3BQW9 127 aa6.34□□□□□ -1.39
HMGB1P28-201ENST00000507778 DLGAP3O95886 979 aa6.34□□□□□ -1.39
HMGB1P28-201ENST00000507778 ELNP15502 786 aa6.34□□□□□ -1.39
HMGB1P28-201ENST00000507778 MCM4P33991 863 aa6.34□□□□□ -1.39
HMGB1P28-201ENST00000507778 SOX9P48436 509 aa6.34□□□□□ -1.39
HMGB1P28-201ENST00000507778 ZNF165P49910 485 aa6.34□□□□□ -1.39
HMGB1P28-201ENST00000507778 KIF4BQ2VIQ3 1234 aa6.34□□□□□ -1.39
HMGB1P28-201ENST00000507778 PDZRN4Q6ZMN7 1036 aaPredicted RBP6.34□□□□□ -1.39
HMGB1P28-201ENST00000507778 UBASH3BQ8TF42 649 aa6.34□□□□□ -1.39
HMGB1P28-201ENST00000507778 UBXN4Q92575 508 aa6.34□□□□□ -1.39
HMGB1P28-201ENST00000507778 WDR89Q96FK6 387 aaPredicted RBP6.34□□□□□ -1.39
HMGB1P28-201ENST00000507778 ADAMTS8Q9UP79 889 aa6.34□□□□□ -1.39
HMGB1P28-201ENST00000507778 SNCAIPQ9Y6H5 919 aa6.34□□□□□ -1.39
HMGB1P28-201ENST00000507778 CNTNAP5Q8WYK1 1306 aa6.33□□□□□ -1.4
HMGB1P28-201ENST00000507778 SYNGAP1Q96PV0 1343 aa6.33□□□□□ -1.4
HMGB1P28-201ENST00000507778 AOC2O75106 756 aa6.33□□□□□ -1.4
HMGB1P28-201ENST00000507778 SSBP05455 408 aaKnown RBP eCLIP6.33□□□□□ -1.4
HMGB1P28-201ENST00000507778 FGRP09769 529 aa6.33□□□□□ -1.4
HMGB1P28-201ENST00000507778 GTF2F1P35269 517 aaKnown RBP eCLIP6.33□□□□□ -1.4
HMGB1P28-201ENST00000507778 ACAD11Q709F0 780 aa6.33□□□□□ -1.4
HMGB1P28-201ENST00000507778 HDXQ7Z353 690 aa6.33□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 47.9 ms