RNA–Protein interactions for RNA: ENST00000504761.6

TCOF1-207, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene TCOF1, Length 4,467 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-207ENST00000504761 PRKAB2O43741 272 aa16.17■□□□□ 0.18
TCOF1-207ENST00000504761 EIF5P55010 431 aaKnown RBP16.17■□□□□ 0.18
TCOF1-207ENST00000504761 PPARAQ07869 468 aa16.17■□□□□ 0.18
TCOF1-207ENST00000504761 ZNF830Q96NB3 372 aaPredicted RBP16.17■□□□□ 0.18
TCOF1-207ENST00000504761 KCNJ14Q9UNX9 436 aa16.17■□□□□ 0.18
TCOF1-207ENST00000504761 TTF2Q9UNY4 1162 aaKnown RBP16.17■□□□□ 0.18
TCOF1-207ENST00000504761 GJA3Q9Y6H8 435 aa16.17■□□□□ 0.18
TCOF1-207ENST00000504761 UBE4AQ14139 1066 aa16.17■□□□□ 0.18
TCOF1-207ENST00000504761 KIAA0825Q8IV33 1275 aa16.17■□□□□ 0.18
TCOF1-207ENST00000504761 DHX58Q96C10 678 aa16.17■□□□□ 0.18
TCOF1-207ENST00000504761 IQSEC2Q5JU85 1478 aa16.17■□□□□ 0.18
TCOF1-207ENST00000504761 SOS2Q07890 1332 aaPredicted RBP16.17■□□□□ 0.18
TCOF1-207ENST00000504761 TNNI2P48788 182 aa16.17■□□□□ 0.18
TCOF1-207ENST00000504761 MARCH10Q8NA82 808 aaPredicted RBP16.17■□□□□ 0.18
TCOF1-207ENST00000504761 PLIN2Q99541 437 aa16.17■□□□□ 0.18
TCOF1-207ENST00000504761 ZNHIT6Q9NWK9 470 aaKnown RBP16.17■□□□□ 0.18
TCOF1-207ENST00000504761 SFPQP23246 707 aaKnown RBP eCLIP16.16■□□□□ 0.18
TCOF1-207ENST00000504761 CCDC178Q5BJE1 867 aa16.16■□□□□ 0.18
TCOF1-207ENST00000504761 DIS3L2Q8IYB7 885 aaKnown RBP16.16■□□□□ 0.18
TCOF1-207ENST00000504761 GTF3C6Q969F1 213 aa16.16■□□□□ 0.18
TCOF1-207ENST00000504761 DCAF8L1A6NGE4 600 aa16.16■□□□□ 0.18
TCOF1-207ENST00000504761 BRD1O95696 1058 aa16.16■□□□□ 0.18
TCOF1-207ENST00000504761 RXRBP28702 533 aa16.16■□□□□ 0.18
TCOF1-207ENST00000504761 CHMP4BP1P59074 171 aa16.16■□□□□ 0.18
TCOF1-207ENST00000504761 RASGRF1Q13972 1273 aa16.16■□□□□ 0.18
TCOF1-207ENST00000504761 SPECC1Q5M775 1068 aa16.16■□□□□ 0.18
TCOF1-207ENST00000504761 CCDC148Q8NFR7 591 aa16.16■□□□□ 0.18
TCOF1-207ENST00000504761 ZNF174Q15697 407 aa16.16■□□□□ 0.18
TCOF1-207ENST00000504761 NLGN1Q8N2Q7 840 aa16.16■□□□□ 0.18
TCOF1-207ENST00000504761 DYNLL1P63167 89 aaKnown RBP16.15■□□□□ 0.18
TCOF1-207ENST00000504761 HSP90AA2PQ14568 343 aaPredicted RBP16.15■□□□□ 0.18
TCOF1-207ENST00000504761 SSH2Q76I76 1423 aa16.15■□□□□ 0.18
TCOF1-207ENST00000504761 POLR1AO95602 1720 aaPredicted RBP16.15■□□□□ 0.18
TCOF1-207ENST00000504761 BAG6P46379 1132 aa16.15■□□□□ 0.18
TCOF1-207ENST00000504761 ISCA1Q9BUE6 129 aa16.15■□□□□ 0.18
TCOF1-207ENST00000504761 EPB41L2O43491 1005 aaKnown RBP16.15■□□□□ 0.18
TCOF1-207ENST00000504761 RPS6KA4O75676 772 aa16.15■□□□□ 0.18
TCOF1-207ENST00000504761 ALDH1B1P30837 517 aa16.15■□□□□ 0.18
TCOF1-207ENST00000504761 KRT2P35908 639 aa16.15■□□□□ 0.18
TCOF1-207ENST00000504761 ZYXQ15942 572 aaKnown RBP16.15■□□□□ 0.18
TCOF1-207ENST00000504761 DEF6Q9H4E7 631 aa16.15■□□□□ 0.18
TCOF1-207ENST00000504761 ARHGEF28Q8N1W1 1705 aaKnown RBP16.15■□□□□ 0.18
TCOF1-207ENST00000504761 MCAMP43121 646 aa16.15■□□□□ 0.18
TCOF1-207ENST00000504761 TYRO3Q06418 890 aa16.15■□□□□ 0.18
TCOF1-207ENST00000504761 UBE3CQ15386 1083 aa16.15■□□□□ 0.18
TCOF1-207ENST00000504761 C2CD5Q86YS7 1000 aa16.15■□□□□ 0.18
TCOF1-207ENST00000504761 RRP36Q96EU6 259 aaKnown RBP16.15■□□□□ 0.18
TCOF1-207ENST00000504761 CALML4Q96GE6 196 aa16.15■□□□□ 0.18
TCOF1-207ENST00000504761 PIH1D3Q9NQM4 214 aaKnown RBP16.15■□□□□ 0.18
TCOF1-207ENST00000504761 PPIP5K2O43314 1243 aa16.14■□□□□ 0.17
TCOF1-207ENST00000504761 KRT40Q6A162 431 aa16.14■□□□□ 0.17
TCOF1-207ENST00000504761 LLPHQ9BRT6 129 aaKnown RBP16.14■□□□□ 0.17
TCOF1-207ENST00000504761 PDIA6Q15084 440 aa16.14■□□□□ 0.17
TCOF1-207ENST00000504761 TBC1D9BQ66K14 1250 aa16.14■□□□□ 0.17
TCOF1-207ENST00000504761 BRAPQ7Z569 592 aa16.14■□□□□ 0.17
TCOF1-207ENST00000504761 LMBRD1Q9NUN5 540 aa16.14■□□□□ 0.17
TCOF1-207ENST00000504761 PARP1P09874 1014 aaKnown RBP16.14■□□□□ 0.17
TCOF1-207ENST00000504761 GJD4Q96KN9 370 aaPredicted RBP16.14■□□□□ 0.17
TCOF1-207ENST00000504761 TRMT1Q9NXH9 659 aaKnown RBP16.14■□□□□ 0.17
TCOF1-207ENST00000504761 CEMIPQ8WUJ3 1361 aa16.14■□□□□ 0.17
TCOF1-207ENST00000504761 CHGBP05060 677 aa16.13■□□□□ 0.17
TCOF1-207ENST00000504761 TOP1P11387 765 aaKnown RBP16.13■□□□□ 0.17
TCOF1-207ENST00000504761 NOM1Q5C9Z4 860 aaKnown RBP16.13■□□□□ 0.17
TCOF1-207ENST00000504761 CT47A1Q5JQC4 288 aaPredicted RBP16.13■□□□□ 0.17
TCOF1-207ENST00000504761 CELF1Q92879 486 aaKnown RBP16.13■□□□□ 0.17
TCOF1-207ENST00000504761 ARHGEF1Q92888 912 aaKnown RBP16.13■□□□□ 0.17
TCOF1-207ENST00000504761 MAP2P11137 1827 aaKnown RBP16.13■□□□□ 0.17
TCOF1-207ENST00000504761 CALML3P27482 149 aa16.13■□□□□ 0.17
TCOF1-207ENST00000504761 FOXO4P98177 505 aa16.13■□□□□ 0.17
TCOF1-207ENST00000504761 TMC6Q7Z403 805 aa16.13■□□□□ 0.17
TCOF1-207ENST00000504761 AOPEPQ8N6M6 819 aa16.13■□□□□ 0.17
TCOF1-207ENST00000504761 FAM200AQ8TCP9 573 aa16.13■□□□□ 0.17
TCOF1-207ENST00000504761 ERCC4Q92889 916 aaPredicted RBP16.13■□□□□ 0.17
TCOF1-207ENST00000504761 UIMC1Q96RL1 719 aa16.13■□□□□ 0.17
TCOF1-207ENST00000504761 C6orf50Q9HD87 102 aa16.13■□□□□ 0.17
TCOF1-207ENST00000504761 VPS54Q9P1Q0 977 aa16.13■□□□□ 0.17
TCOF1-207ENST00000504761 SAMM50Q9Y512 469 aa16.13■□□□□ 0.17
TCOF1-207ENST00000504761 DEXIO95424 95 aa16.13■□□□□ 0.17
TCOF1-207ENST00000504761 LARGE1O95461 756 aa16.13■□□□□ 0.17
TCOF1-207ENST00000504761 LMOD1P29536 600 aaPredicted RBP16.13■□□□□ 0.17
TCOF1-207ENST00000504761 HSPA1LP34931 641 aa16.13■□□□□ 0.17
TCOF1-207ENST00000504761 ADD2P35612 726 aa16.13■□□□□ 0.17
TCOF1-207ENST00000504761 PDE6BP35913 854 aa16.13■□□□□ 0.17
TCOF1-207ENST00000504761 ENOX2Q16206 610 aaKnown RBP16.13■□□□□ 0.17
TCOF1-207ENST00000504761 LEO1Q8WVC0 666 aaPredicted RBP16.13■□□□□ 0.17
TCOF1-207ENST00000504761 GPHNQ9NQX3 736 aaPredicted RBP16.13■□□□□ 0.17
TCOF1-207ENST00000504761 USP40Q9NVE5 1235 aa16.13■□□□□ 0.17
TCOF1-207ENST00000504761 VWA3AA6NCI4 1184 aa16.12■□□□□ 0.17
TCOF1-207ENST00000504761 ZNF654Q8IZM8 581 aa16.12■□□□□ 0.17
TCOF1-207ENST00000504761 PIK3AP1Q6ZUJ8 805 aa16.12■□□□□ 0.17
TCOF1-207ENST00000504761 NEURL4Q96JN8 1562 aa16.12■□□□□ 0.17
TCOF1-207ENST00000504761 CYP2D7A0A087X1C5 515 aa16.12■□□□□ 0.17
TCOF1-207ENST00000504761 STAT6P42226 847 aa16.12■□□□□ 0.17
TCOF1-207ENST00000504761 DIXDC1Q155Q3 683 aa16.12■□□□□ 0.17
TCOF1-207ENST00000504761 LETM2Q2VYF4 491 aa16.12■□□□□ 0.17
TCOF1-207ENST00000504761 CLEC4GQ6UXB4 293 aa16.12■□□□□ 0.17
TCOF1-207ENST00000504761 LCORLQ8N3X6 602 aa16.12■□□□□ 0.17
TCOF1-207ENST00000504761 MTMR6Q9Y217 621 aa16.12■□□□□ 0.17
TCOF1-207ENST00000504761 TNKSO95271 1327 aa16.12■□□□□ 0.17
TCOF1-207ENST00000504761 LUZP1Q86V48 1076 aa16.11■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms