RNA–Protein interactions for RNA: ENST00000497106.5

USP54-215, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 4,773 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-215ENST00000497106 ZBTB43O43298 467 aa9.79□□□□□ -0.84
USP54-215ENST00000497106 ZNF827Q17R98 1081 aa9.79□□□□□ -0.84
USP54-215ENST00000497106 CD209Q9NNX6 404 aa9.79□□□□□ -0.84
USP54-215ENST00000497106 DDX49Q9Y6V7 483 aaKnown RBP9.79□□□□□ -0.84
USP54-215ENST00000497106 KLF18A0A0U1RQI7 1052 aa9.79□□□□□ -0.84
USP54-215ENST00000497106 DCAF8L1A6NGE4 600 aa9.79□□□□□ -0.84
USP54-215ENST00000497106 PPARAQ07869 468 aa9.79□□□□□ -0.84
USP54-215ENST00000497106 CRY2Q49AN0 593 aa9.79□□□□□ -0.84
USP54-215ENST00000497106 ZSCAN29Q8IWY8 852 aaPredicted RBP9.79□□□□□ -0.84
USP54-215ENST00000497106 ZNF274Q96GC6 653 aaPredicted RBP9.79□□□□□ -0.84
USP54-215ENST00000497106 CFAP45Q9UL16 551 aa9.79□□□□□ -0.84
USP54-215ENST00000497106 SALL1Q9NSC2 1324 aa9.78□□□□□ -0.84
USP54-215ENST00000497106 FGAP02671 866 aa9.78□□□□□ -0.84
USP54-215ENST00000497106 GTF2IP78347 998 aa9.78□□□□□ -0.84
USP54-215ENST00000497106 SEC62Q99442 399 aaKnown RBP9.78□□□□□ -0.84
USP54-215ENST00000497106 PIM2Q9P1W9 311 aa9.78□□□□□ -0.84
USP54-215ENST00000497106 ANGEL1Q9UNK9 670 aaKnown RBP9.78□□□□□ -0.84
USP54-215ENST00000497106 SPEF2Q9C093 1822 aa9.78□□□□□ -0.84
USP54-215ENST00000497106 ANKRD36CQ5JPF3 1778 aa9.78□□□□□ -0.84
USP54-215ENST00000497106 GJB2P29033 226 aa9.78□□□□□ -0.84
USP54-215ENST00000497106 SSRP1Q08945 709 aaKnown RBP9.78□□□□□ -0.84
USP54-215ENST00000497106 JMYQ8N9B5 988 aa9.78□□□□□ -0.84
USP54-215ENST00000497106 TBC1D16Q8TBP0 767 aa9.78□□□□□ -0.84
USP54-215ENST00000497106 STRBPQ96SI9 672 aaKnown RBP9.78□□□□□ -0.84
USP54-215ENST00000497106 ZSCAN16Q9H4T2 348 aaPredicted RBP9.78□□□□□ -0.84
USP54-215ENST00000497106 KAT14Q9H8E8 782 aa9.78□□□□□ -0.84
USP54-215ENST00000497106 NUP133Q8WUM0 1156 aa9.78□□□□□ -0.84
USP54-215ENST00000497106 KCNB2Q92953 911 aa9.78□□□□□ -0.84
USP54-215ENST00000497106 PALD1Q9ULE6 856 aa9.78□□□□□ -0.84
USP54-215ENST00000497106 STX6O43752 255 aa9.78□□□□□ -0.84
USP54-215ENST00000497106 LETM1O95202 739 aaPredicted RBP9.78□□□□□ -0.84
USP54-215ENST00000497106 TNNI2P48788 182 aa9.78□□□□□ -0.84
USP54-215ENST00000497106 DDR1Q08345 913 aa9.78□□□□□ -0.84
USP54-215ENST00000497106 DALRD3Q5D0E6 543 aaKnown RBP9.78□□□□□ -0.84
USP54-215ENST00000497106 IFIT1BQ5T764 474 aaKnown RBP9.78□□□□□ -0.84
USP54-215ENST00000497106 TTLL5Q6EMB2 1281 aa9.78□□□□□ -0.84
USP54-215ENST00000497106 VPS33BQ9H267 617 aa9.78□□□□□ -0.84
USP54-215ENST00000497106 AATFQ9NY61 560 aaKnown RBP eCLIP9.78□□□□□ -0.84
USP54-215ENST00000497106 SRGNP10124 158 aa9.77□□□□□ -0.84
USP54-215ENST00000497106 MCM4P33991 863 aa9.77□□□□□ -0.84
USP54-215ENST00000497106 TDRD7Q8NHU6 1098 aaKnown RBP9.77□□□□□ -0.84
USP54-215ENST00000497106 PUS7LQ9H0K6 701 aaKnown RBP9.77□□□□□ -0.84
USP54-215ENST00000497106 TAOK2Q9UL54 1235 aa9.77□□□□□ -0.84
USP54-215ENST00000497106 TSPY3P0CV98 308 aa9.77□□□□□ -0.85
USP54-215ENST00000497106 TSPY8P0CW00 308 aa9.77□□□□□ -0.85
USP54-215ENST00000497106 MMP14P50281 582 aa9.77□□□□□ -0.85
USP54-215ENST00000497106 CAMKK2Q96RR4 588 aa9.77□□□□□ -0.85
USP54-215ENST00000497106 EIF6P56537 245 aaKnown RBP9.77□□□□□ -0.85
USP54-215ENST00000497106 TGFB2P61812 414 aa9.77□□□□□ -0.85
USP54-215ENST00000497106 RAB3GAP1Q15042 981 aa9.77□□□□□ -0.85
USP54-215ENST00000497106 FOXD4L5Q5VV16 416 aaPredicted RBP9.77□□□□□ -0.85
USP54-215ENST00000497106 PI16Q6UXB8 463 aa9.77□□□□□ -0.85
USP54-215ENST00000497106 SMIM5Q71RC9 77 aa9.77□□□□□ -0.85
USP54-215ENST00000497106 FOXD4L4Q8WXT5 416 aaPredicted RBP9.77□□□□□ -0.85
USP54-215ENST00000497106 MTFR1LQ9H019 292 aa9.77□□□□□ -0.85
USP54-215ENST00000497106 CYP21A2P08686 494 aa9.76□□□□□ -0.85
USP54-215ENST00000497106 IARSP41252 1262 aaKnown RBP9.76□□□□□ -0.85
USP54-215ENST00000497106 MECOMQ03112 1051 aa9.76□□□□□ -0.85
USP54-215ENST00000497106 RTN1Q16799 776 aa9.76□□□□□ -0.85
USP54-215ENST00000497106 HOOK2Q96ED9 719 aa9.76□□□□□ -0.85
USP54-215ENST00000497106 C8orf76Q96K31 380 aa9.76□□□□□ -0.85
USP54-215ENST00000497106 CABP5Q9NP86 173 aa9.76□□□□□ -0.85
USP54-215ENST00000497106 CUL4AQ13619 759 aa9.76□□□□□ -0.85
USP54-215ENST00000497106 SCARF1Q14162 830 aa9.76□□□□□ -0.85
USP54-215ENST00000497106 TNIP1Q15025 636 aa9.76□□□□□ -0.85
USP54-215ENST00000497106 IL17RAQ96F46 866 aa9.76□□□□□ -0.85
USP54-215ENST00000497106 SCAND2PQ9GZW5 306 aaPredicted RBP9.76□□□□□ -0.85
USP54-215ENST00000497106 NOL7Q9UMY1 257 aaKnown RBP9.76□□□□□ -0.85
USP54-215ENST00000497106 TTF2Q9UNY4 1162 aaKnown RBP9.76□□□□□ -0.85
USP54-215ENST00000497106 SCN7AQ01118 1682 aa9.76□□□□□ -0.85
USP54-215ENST00000497106 ZBTB22O15209 634 aa9.76□□□□□ -0.85
USP54-215ENST00000497106 BTDP43251 543 aa9.76□□□□□ -0.85
USP54-215ENST00000497106 TRAF1Q13077 416 aa9.76□□□□□ -0.85
USP54-215ENST00000497106 CCDC12Q8WUD4 166 aaPredicted RBP9.76□□□□□ -0.85
USP54-215ENST00000497106 USP17L3A6NCW0 530 aa9.76□□□□□ -0.85
USP54-215ENST00000497106 USP17L4A6NCW7 530 aa9.76□□□□□ -0.85
USP54-215ENST00000497106 ATL3Q6DD88 541 aa9.76□□□□□ -0.85
USP54-215ENST00000497106 USP17L1Q7RTZ2 530 aa9.76□□□□□ -0.85
USP54-215ENST00000497106 ZSCAN22P10073 491 aaPredicted RBP9.75□□□□□ -0.85
USP54-215ENST00000497106 RCAN1P53805 252 aa9.75□□□□□ -0.85
USP54-215ENST00000497106 RASEFQ8IZ41 740 aa9.75□□□□□ -0.85
USP54-215ENST00000497106 MROH7-TTC4A0A0A0MT08 1334 aa9.75□□□□□ -0.85
USP54-215ENST00000497106 PFKFB2O60825 505 aa9.75□□□□□ -0.85
USP54-215ENST00000497106 KDM4AO75164 1064 aa9.75□□□□□ -0.85
USP54-215ENST00000497106 SWAP70Q9UH65 585 aa9.75□□□□□ -0.85
USP54-215ENST00000497106 HOOK1Q9UJC3 728 aaKnown RBP9.75□□□□□ -0.85
USP54-215ENST00000497106 C3orf67Q6ZVT6 689 aa9.75□□□□□ -0.85
USP54-215ENST00000497106 LCORLQ8N3X6 602 aa9.75□□□□□ -0.85
USP54-215ENST00000497106 STAG1Q8WVM7 1258 aa9.75□□□□□ -0.85
USP54-215ENST00000497106 CTDP1Q9Y5B0 961 aaPredicted RBP9.75□□□□□ -0.85
USP54-215ENST00000497106 NUP98P52948 1817 aa9.75□□□□□ -0.85
USP54-215ENST00000497106 DUOX1Q9NRD9 1551 aa9.75□□□□□ -0.85
USP54-215ENST00000497106 TNPO1Q92973 898 aaKnown RBP9.75□□□□□ -0.85
USP54-215ENST00000497106 LZTS2Q9BRK4 669 aa9.75□□□□□ -0.85
USP54-215ENST00000497106 ORC3Q9UBD5 711 aaPredicted RBP9.75□□□□□ -0.85
USP54-215ENST00000497106 CEP131Q9UPN4 1083 aa9.75□□□□□ -0.85
USP54-215ENST00000497106 RREB1Q92766 1687 aa9.75□□□□□ -0.85
USP54-215ENST00000497106 B4E1Z4 1266 aa9.74□□□□□ -0.85
USP54-215ENST00000497106 F8W031 263 aaPredicted RBP9.74□□□□□ -0.85
USP54-215ENST00000497106 IL1R1P14778 569 aa9.74□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms