RNA–Protein interactions for RNA: ENST00000495817.1

CCDC39-207, Transcript of coiled-coil domain containing 39, humanhuman

TSL 3

Gene CCDC39, Length 1,047 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39-207ENST00000495817 ZNF157P51786 506 aaPredicted RBP9.48□□□□□ -0.89
CCDC39-207ENST00000495817 PDE3AQ14432 1141 aa9.48□□□□□ -0.89
CCDC39-207ENST00000495817 SCARA3Q6AZY7 606 aa9.48□□□□□ -0.89
CCDC39-207ENST00000495817 TPTE2Q6XPS3 522 aa9.48□□□□□ -0.89
CCDC39-207ENST00000495817 RAXQ9Y2V3 346 aa9.48□□□□□ -0.89
CCDC39-207ENST00000495817 ENC1O14682 589 aa9.47□□□□□ -0.89
CCDC39-207ENST00000495817 GSC2O15499 205 aa9.47□□□□□ -0.89
CCDC39-207ENST00000495817 SORBS3O60504 671 aa9.47□□□□□ -0.89
CCDC39-207ENST00000495817 SOX4Q06945 474 aaPredicted RBP9.47□□□□□ -0.89
CCDC39-207ENST00000495817 SV2BQ7L1I2 683 aa9.47□□□□□ -0.89
CCDC39-207ENST00000495817 PDZD3Q86UT5 571 aa9.47□□□□□ -0.89
CCDC39-207ENST00000495817 FAM20CQ8IXL6 584 aa9.47□□□□□ -0.89
CCDC39-207ENST00000495817 BACH2Q9BYV9 841 aa9.47□□□□□ -0.89
CCDC39-207ENST00000495817 MRS2Q9HD23 443 aa9.47□□□□□ -0.89
CCDC39-207ENST00000495817 RAD18Q9NS91 495 aa9.47□□□□□ -0.89
CCDC39-207ENST00000495817 TTF2Q9UNY4 1162 aaKnown RBP9.47□□□□□ -0.89
CCDC39-207ENST00000495817 ECEL1O95672 775 aa9.46□□□□□ -0.9
CCDC39-207ENST00000495817 ARNTP27540 789 aa9.46□□□□□ -0.9
CCDC39-207ENST00000495817 TSNAXIP1Q2TAA8 658 aa9.46□□□□□ -0.9
CCDC39-207ENST00000495817 AOC2O75106 756 aa9.45□□□□□ -0.9
CCDC39-207ENST00000495817 BMP3P12645 472 aa9.45□□□□□ -0.9
CCDC39-207ENST00000495817 C2CD4AQ8NCU7 369 aaPredicted RBP9.45□□□□□ -0.9
CCDC39-207ENST00000495817 WDR18Q9BV38 432 aa9.45□□□□□ -0.9
CCDC39-207ENST00000495817 YIPF2Q9BWQ6 316 aa9.45□□□□□ -0.9
CCDC39-207ENST00000495817 CCDC86Q9H6F5 360 aaKnown RBP9.45□□□□□ -0.9
CCDC39-207ENST00000495817 STOML1Q9UBI4 398 aa9.45□□□□□ -0.9
CCDC39-207ENST00000495817 FBXO24O75426 580 aa9.44□□□□□ -0.9
CCDC39-207ENST00000495817 ST13P50502 369 aaKnown RBP9.44□□□□□ -0.9
CCDC39-207ENST00000495817 ZNF252P-AS1Q0IIN9 211 aa9.44□□□□□ -0.9
CCDC39-207ENST00000495817 LRRC14Q15048 493 aa9.44□□□□□ -0.9
CCDC39-207ENST00000495817 KIF4BQ2VIQ3 1234 aa9.44□□□□□ -0.9
CCDC39-207ENST00000495817 CLEC10AQ8IUN9 316 aa9.44□□□□□ -0.9
CCDC39-207ENST00000495817 CRELD1Q96HD1 420 aa9.44□□□□□ -0.9
CCDC39-207ENST00000495817 SCAMP3O14828 347 aaKnown RBP9.43□□□□□ -0.9
CCDC39-207ENST00000495817 SLFN14P0C7P3 912 aa9.43□□□□□ -0.9
CCDC39-207ENST00000495817 AKAP4Q5JQC9 854 aa9.43□□□□□ -0.9
CCDC39-207ENST00000495817 PRSS36Q5K4E3 855 aa9.43□□□□□ -0.9
CCDC39-207ENST00000495817 LDLRAD1Q5T700 205 aa9.43□□□□□ -0.9
CCDC39-207ENST00000495817 FAM161BQ96MY7 647 aa9.43□□□□□ -0.9
CCDC39-207ENST00000495817 FAM83CQ9BQN1 747 aa9.43□□□□□ -0.9
CCDC39-207ENST00000495817 RNF19AQ9NV58 838 aa9.43□□□□□ -0.9
CCDC39-207ENST00000495817 DRD2P14416 443 aa9.42□□□□□ -0.9
CCDC39-207ENST00000495817 FSTP19883 344 aa9.42□□□□□ -0.9
CCDC39-207ENST00000495817 ITGB7P26010 798 aa9.42□□□□□ -0.9
CCDC39-207ENST00000495817 USP11P51784 963 aa9.42□□□□□ -0.9
CCDC39-207ENST00000495817 BEND4Q6ZU67 534 aa9.42□□□□□ -0.9
CCDC39-207ENST00000495817 KCNB2Q92953 911 aa9.42□□□□□ -0.9
CCDC39-207ENST00000495817 GSX1Q9H4S2 264 aaPredicted RBP9.42□□□□□ -0.9
CCDC39-207ENST00000495817 CACNA2D2Q9NY47 1150 aa9.42□□□□□ -0.9
CCDC39-207ENST00000495817 VTI1BQ9UEU0 232 aa9.42□□□□□ -0.9
CCDC39-207ENST00000495817 CYP8B1Q9UNU6 501 aa9.42□□□□□ -0.9
CCDC39-207ENST00000495817 AP4E1Q9UPM8 1137 aa9.42□□□□□ -0.9
CCDC39-207ENST00000495817 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP9.41□□□□□ -0.9
CCDC39-207ENST00000495817 ZNF862O60290 1169 aa9.41□□□□□ -0.9
CCDC39-207ENST00000495817 PAGE1O75459 146 aa9.41□□□□□ -0.9
CCDC39-207ENST00000495817 TRIM37O94972 964 aa9.41□□□□□ -0.9
CCDC39-207ENST00000495817 CELA3AP09093 270 aa9.41□□□□□ -0.9
CCDC39-207ENST00000495817 MAP4P27816 1152 aaKnown RBP9.41□□□□□ -0.9
CCDC39-207ENST00000495817 CCDC85BQ15834 202 aaPredicted RBP9.41□□□□□ -0.9
CCDC39-207ENST00000495817 PCNX4Q63HM2 1172 aa9.41□□□□□ -0.9
CCDC39-207ENST00000495817 LLGL2Q6P1M3 1020 aa9.41□□□□□ -0.9
CCDC39-207ENST00000495817 STK35Q8TDR2 534 aa9.41□□□□□ -0.9
CCDC39-207ENST00000495817 KCNF1Q9H3M0 494 aa9.41□□□□□ -0.9
CCDC39-207ENST00000495817 C7orf69Q9H7B7 122 aa9.41□□□□□ -0.9
CCDC39-207ENST00000495817 CBX8Q9HC52 389 aa9.41□□□□□ -0.9
CCDC39-207ENST00000495817 ACTL7BQ9Y614 415 aa9.41□□□□□ -0.9
CCDC39-207ENST00000495817 RLBP1P12271 317 aa9.4□□□□□ -0.9
CCDC39-207ENST00000495817 BMP6P22004 513 aa9.4□□□□□ -0.9
CCDC39-207ENST00000495817 RPS26P62854 115 aaKnown RBP9.4□□□□□ -0.9
CCDC39-207ENST00000495817 ID3Q02535 119 aa9.4□□□□□ -0.9
CCDC39-207ENST00000495817 SGO2Q562F6 1265 aa9.4□□□□□ -0.9
CCDC39-207ENST00000495817 MAP1SQ66K74 1059 aaPredicted RBP9.4□□□□□ -0.9
CCDC39-207ENST00000495817 EZH1Q92800 747 aaPredicted RBP9.4□□□□□ -0.9
CCDC39-207ENST00000495817 NOC4LQ9BVI4 516 aaKnown RBP9.4□□□□□ -0.9
CCDC39-207ENST00000495817 ZC3H12CQ9C0D7 883 aaKnown RBP9.4□□□□□ -0.9
CCDC39-207ENST00000495817 ATXN3LQ9H3M9 355 aa9.4□□□□□ -0.9
CCDC39-207ENST00000495817 METTL5Q9NRN9 209 aaKnown RBP9.4□□□□□ -0.9
CCDC39-207ENST00000495817 LIG1P18858 919 aa9.39□□□□□ -0.91
CCDC39-207ENST00000495817 TAF1CQ15572 869 aaPredicted RBP9.39□□□□□ -0.91
CCDC39-207ENST00000495817 RNF43Q68DV7 783 aa9.39□□□□□ -0.91
CCDC39-207ENST00000495817 DYMQ7RTS9 669 aa9.39□□□□□ -0.91
CCDC39-207ENST00000495817 TRIM42Q8IWZ5 723 aa9.39□□□□□ -0.91
CCDC39-207ENST00000495817 TMEM87AQ8NBN3 555 aa9.39□□□□□ -0.91
CCDC39-207ENST00000495817 ACSBG1Q96GR2 724 aa9.39□□□□□ -0.91
CCDC39-207ENST00000495817 CRIM1Q9NZV1 1036 aa9.39□□□□□ -0.91
CCDC39-207ENST00000495817 PCDHGC5Q9Y5F6 944 aa9.39□□□□□ -0.91
CCDC39-207ENST00000495817 TMPRSS2O15393 492 aa9.38□□□□□ -0.91
CCDC39-207ENST00000495817 IGLV1-40P01703 118 aa9.38□□□□□ -0.91
CCDC39-207ENST00000495817 RXRBP28702 533 aa9.38□□□□□ -0.91
CCDC39-207ENST00000495817 NFIAQ12857 509 aa9.38□□□□□ -0.91
CCDC39-207ENST00000495817 TTBK2Q6IQ55 1244 aa9.38□□□□□ -0.91
CCDC39-207ENST00000495817 PAOXQ6QHF9 649 aa9.38□□□□□ -0.91
CCDC39-207ENST00000495817 DBNDD2Q9BQY9 259 aa9.38□□□□□ -0.91
CCDC39-207ENST00000495817 USP31Q70CQ4 1352 aa9.37□□□□□ -0.91
CCDC39-207ENST00000495817 FAM95CA0A1B0GW59 222 aa9.37□□□□□ -0.91
CCDC39-207ENST00000495817 HMX2A2RU54 273 aa9.37□□□□□ -0.91
CCDC39-207ENST00000495817 CTSHP09668 335 aa9.37□□□□□ -0.91
CCDC39-207ENST00000495817 ASPAP45381 313 aa9.37□□□□□ -0.91
CCDC39-207ENST00000495817 MAP7Q14244 749 aa9.37□□□□□ -0.91
CCDC39-207ENST00000495817 MEI1Q5TIA1 1274 aa9.37□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 41.6 ms