RNA–Protein interactions for RNA: ENST00000492859.5

BRCA1-220, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best)

Gene BRCA1, Length 1,584 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-220ENST00000492859 SRA1Q9HD15 236 aaKnown RBP4.95□□□□□ -1.62
BRCA1-220ENST00000492859 MRGBPQ9NV56 204 aa4.95□□□□□ -1.62
BRCA1-220ENST00000492859 SIRPGQ9P1W8 387 aa4.95□□□□□ -1.62
BRCA1-220ENST00000492859 FBXO10Q9UK96 956 aa4.95□□□□□ -1.62
BRCA1-220ENST00000492859 PAXBP1Q9Y5B6 917 aa4.95□□□□□ -1.62
BRCA1-220ENST00000492859 N6AMT1Q9Y5N5 214 aa4.95□□□□□ -1.62
BRCA1-220ENST00000492859 FAM196BA6NMK8 535 aa4.94□□□□□ -1.62
BRCA1-220ENST00000492859 NBPF26B4DH59 902 aa4.94□□□□□ -1.62
BRCA1-220ENST00000492859 USP17L15C9J2P7 530 aa4.94□□□□□ -1.62
BRCA1-220ENST00000492859 USP17L10C9JJH3 530 aa4.94□□□□□ -1.62
BRCA1-220ENST00000492859 USP17L13C9JLJ4 530 aa4.94□□□□□ -1.62
BRCA1-220ENST00000492859 USP17L12C9JPN9 530 aa4.94□□□□□ -1.62
BRCA1-220ENST00000492859 USP17L11C9JVI0 530 aa4.94□□□□□ -1.62
BRCA1-220ENST00000492859 USP17L21D6R901 530 aa4.94□□□□□ -1.62
BRCA1-220ENST00000492859 USP17L18D6R9N7 530 aa4.94□□□□□ -1.62
BRCA1-220ENST00000492859 USP17L22D6RA61 530 aa4.94□□□□□ -1.62
BRCA1-220ENST00000492859 USP17L17D6RBQ6 530 aa4.94□□□□□ -1.62
BRCA1-220ENST00000492859 USP17L19D6RCP7 530 aa4.94□□□□□ -1.62
BRCA1-220ENST00000492859 USP17L20D6RJB6 530 aa4.94□□□□□ -1.62
BRCA1-220ENST00000492859 TOR1BO14657 336 aa4.94□□□□□ -1.62
BRCA1-220ENST00000492859 CCP110O43303 1012 aa4.94□□□□□ -1.62
BRCA1-220ENST00000492859 PRPF3O43395 683 aaKnown RBP4.94□□□□□ -1.62
BRCA1-220ENST00000492859 C21orf2O43822 256 aa4.94□□□□□ -1.62
BRCA1-220ENST00000492859 SETSIPP0DME0 302 aa4.94□□□□□ -1.62
BRCA1-220ENST00000492859 SLC5A1P13866 664 aa4.94□□□□□ -1.62
BRCA1-220ENST00000492859 CAP2P40123 477 aa4.94□□□□□ -1.62
BRCA1-220ENST00000492859 MAGEA8P43361 318 aa4.94□□□□□ -1.62
BRCA1-220ENST00000492859 DAB2P98082 770 aa4.94□□□□□ -1.62
BRCA1-220ENST00000492859 USP17L24Q0WX57 530 aa4.94□□□□□ -1.62
BRCA1-220ENST00000492859 EIF2B5Q13144 721 aaKnown RBP4.94□□□□□ -1.62
BRCA1-220ENST00000492859 PPP2R5CQ13362 524 aa4.94□□□□□ -1.62
BRCA1-220ENST00000492859 PDE1CQ14123 709 aaPredicted RBP4.94□□□□□ -1.62
BRCA1-220ENST00000492859 QPCTQ16769 361 aa4.94□□□□□ -1.62
BRCA1-220ENST00000492859 C11orf91Q3C1V1 193 aa4.94□□□□□ -1.62
BRCA1-220ENST00000492859 ZC3H12BQ5HYM0 836 aaKnown RBP4.94□□□□□ -1.62
BRCA1-220ENST00000492859 MZT2BQ6NZ67 158 aa4.94□□□□□ -1.62
BRCA1-220ENST00000492859 RIC3Q7Z5B4 369 aa4.94□□□□□ -1.62
BRCA1-220ENST00000492859 MILR1Q7Z6M3 343 aa4.94□□□□□ -1.62
BRCA1-220ENST00000492859 HOMER1Q86YM7 354 aa4.94□□□□□ -1.62
BRCA1-220ENST00000492859 ENAHQ8N8S7 591 aaPredicted RBP4.94□□□□□ -1.62
BRCA1-220ENST00000492859 JMYQ8N9B5 988 aa4.94□□□□□ -1.62
BRCA1-220ENST00000492859 KCT2Q8NC54 265 aa4.94□□□□□ -1.62
BRCA1-220ENST00000492859 DEPDC7Q96QD5 511 aa4.94□□□□□ -1.62
BRCA1-220ENST00000492859 PLEKHA5Q9HAU0 1116 aa4.94□□□□□ -1.62
BRCA1-220ENST00000492859 HMX1Q9NP08 348 aaPredicted RBP4.94□□□□□ -1.62
BRCA1-220ENST00000492859 SMYD2Q9NRG4 433 aa4.94□□□□□ -1.62
BRCA1-220ENST00000492859 PDRG1Q9NUG6 133 aa4.94□□□□□ -1.62
BRCA1-220ENST00000492859 TSR3Q9UJK0 312 aaKnown RBP4.94□□□□□ -1.62
BRCA1-220ENST00000492859 PA2G4Q9UQ80 394 aaKnown RBP4.94□□□□□ -1.62
BRCA1-220ENST00000492859 AKR1B10O60218 316 aa4.93□□□□□ -1.62
BRCA1-220ENST00000492859 OATP04181 439 aa4.93□□□□□ -1.62
BRCA1-220ENST00000492859 LDHBP07195 334 aaKnown RBP4.93□□□□□ -1.62
BRCA1-220ENST00000492859 SMARCA1P28370 1054 aa4.93□□□□□ -1.62
BRCA1-220ENST00000492859 DDIT3P35638 169 aa4.93□□□□□ -1.62
BRCA1-220ENST00000492859 SOX11P35716 441 aa4.93□□□□□ -1.62
BRCA1-220ENST00000492859 GJA8P48165 433 aa4.93□□□□□ -1.62
BRCA1-220ENST00000492859 FMR1Q06787 632 aaKnown RBP eCLIP4.93□□□□□ -1.62
BRCA1-220ENST00000492859 SWSAP1Q6NVH7 229 aa4.93□□□□□ -1.62
BRCA1-220ENST00000492859 IRGCQ6NXR0 463 aa4.93□□□□□ -1.62
BRCA1-220ENST00000492859 TMC7Q7Z402 723 aa4.93□□□□□ -1.62
BRCA1-220ENST00000492859 TDRD7Q8NHU6 1098 aaKnown RBP4.93□□□□□ -1.62
BRCA1-220ENST00000492859 CHMP7Q8WUX9 453 aaPredicted RBP4.93□□□□□ -1.62
BRCA1-220ENST00000492859 SCLT1Q96NL6 688 aa4.93□□□□□ -1.62
BRCA1-220ENST00000492859 GSDMAQ96QA5 445 aa4.93□□□□□ -1.62
BRCA1-220ENST00000492859 MAP7D2Q96T17 732 aa4.93□□□□□ -1.62
BRCA1-220ENST00000492859 CSRNP2Q9H175 543 aa4.93□□□□□ -1.62
BRCA1-220ENST00000492859 EFCC1Q9HA90 598 aa4.93□□□□□ -1.62
BRCA1-220ENST00000492859 DONSONQ9NYP3 566 aa4.93□□□□□ -1.62
BRCA1-220ENST00000492859 ADGRG1Q9Y653 693 aa4.93□□□□□ -1.62
BRCA1-220ENST00000492859 MORC2Q9Y6X9 1032 aaPredicted RBP4.93□□□□□ -1.62
BRCA1-220ENST00000492859 PIK3R4Q99570 1358 aa4.92□□□□□ -1.62
BRCA1-220ENST00000492859 RASSF10A6NK89 507 aa4.92□□□□□ -1.62
BRCA1-220ENST00000492859 PIK3CDO00329 1044 aa4.92□□□□□ -1.62
BRCA1-220ENST00000492859 PRPF40AO75400 957 aaKnown RBP4.92□□□□□ -1.62
BRCA1-220ENST00000492859 LETM1O95202 739 aaPredicted RBP4.92□□□□□ -1.62
BRCA1-220ENST00000492859 KCNA6P17658 529 aa4.92□□□□□ -1.62
BRCA1-220ENST00000492859 BTF3P20290 206 aaKnown RBP4.92□□□□□ -1.62
BRCA1-220ENST00000492859 RXRGP48443 463 aa4.92□□□□□ -1.62
BRCA1-220ENST00000492859 RENBPP51606 427 aa4.92□□□□□ -1.62
BRCA1-220ENST00000492859 PFKPQ01813 784 aa4.92□□□□□ -1.62
BRCA1-220ENST00000492859 APBA1Q02410 837 aa4.92□□□□□ -1.62
BRCA1-220ENST00000492859 SQSTM1Q13501 440 aa4.92□□□□□ -1.62
BRCA1-220ENST00000492859 SMC1AQ14683 1233 aaKnown RBP4.92□□□□□ -1.62
BRCA1-220ENST00000492859 KIF22Q14807 665 aa4.92□□□□□ -1.62
BRCA1-220ENST00000492859 TAF1CQ15572 869 aaPredicted RBP4.92□□□□□ -1.62
BRCA1-220ENST00000492859 ERFEQ4G0M1 354 aa4.92□□□□□ -1.62
BRCA1-220ENST00000492859 ARMC4Q5T2S8 1044 aa4.92□□□□□ -1.62
BRCA1-220ENST00000492859 HIBCHQ6NVY1 386 aaPredicted RBP4.92□□□□□ -1.62
BRCA1-220ENST00000492859 C1orf122Q6ZSJ8 110 aa4.92□□□□□ -1.62
BRCA1-220ENST00000492859 CCDC191Q8NCU4 936 aa4.92□□□□□ -1.62
BRCA1-220ENST00000492859 FAM200AQ8TCP9 573 aa4.92□□□□□ -1.62
BRCA1-220ENST00000492859 PPIL4Q8WUA2 492 aaKnown RBP eCLIP4.92□□□□□ -1.62
BRCA1-220ENST00000492859 ZNF516Q92618 1163 aa4.92□□□□□ -1.62
BRCA1-220ENST00000492859 ZBTB10Q96DT7 871 aa4.92□□□□□ -1.62
BRCA1-220ENST00000492859 NCAPGQ9BPX3 1015 aa4.92□□□□□ -1.62
BRCA1-220ENST00000492859 TEX13AQ9BXU3 409 aaPredicted RBP4.92□□□□□ -1.62
BRCA1-220ENST00000492859 PRKRIP1Q9H875 184 aaPredicted RBP4.92□□□□□ -1.62
BRCA1-220ENST00000492859 ZNF408Q9H9D4 720 aa4.92□□□□□ -1.62
BRCA1-220ENST00000492859 DBNDD1Q9H9R9 158 aa4.92□□□□□ -1.62
BRCA1-220ENST00000492859 NEUROD4Q9HD90 331 aa4.92□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 69.9 ms