RNA–Protein interactions for RNA: ENST00000489573.5

SMC4-221, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 1 (best)

Gene SMC4, Length 1,553 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-221ENST00000489573 CRNKL1Q9BZJ0 848 aaKnown RBP25.74■■□□□ 1.71
SMC4-221ENST00000489573 USP17L3A6NCW0 530 aa25.73■■□□□ 1.71
SMC4-221ENST00000489573 USP17L4A6NCW7 530 aa25.73■■□□□ 1.71
SMC4-221ENST00000489573 E7EWF7 191 aa25.73■■□□□ 1.71
SMC4-221ENST00000489573 BAG3O95817 575 aa25.73■■□□□ 1.71
SMC4-221ENST00000489573 USP17L1Q7RTZ2 530 aa25.73■■□□□ 1.71
SMC4-221ENST00000489573 LARGE2Q8N3Y3 721 aa25.73■■□□□ 1.71
SMC4-221ENST00000489573 SDR42E1Q8WUS8 393 aa25.73■■□□□ 1.71
SMC4-221ENST00000489573 FAM163AQ96GL9 167 aaPredicted RBP25.73■■□□□ 1.71
SMC4-221ENST00000489573 KCNQ5Q9NR82 932 aa25.73■■□□□ 1.71
SMC4-221ENST00000489573 LAMA4Q16363 1823 aa25.73■■□□□ 1.71
SMC4-221ENST00000489573 PPP4CP60510 307 aa25.73■■□□□ 1.71
SMC4-221ENST00000489573 DACT2Q5SW24 774 aa25.73■■□□□ 1.71
SMC4-221ENST00000489573 CERS3Q8IU89 383 aa25.73■■□□□ 1.71
SMC4-221ENST00000489573 MXD3Q9BW11 206 aa25.73■■□□□ 1.71
SMC4-221ENST00000489573 TAOK3Q9H2K8 898 aa25.73■■□□□ 1.71
SMC4-221ENST00000489573 PDRG1Q9NUG6 133 aa25.73■■□□□ 1.71
SMC4-221ENST00000489573 SCN9AQ15858 1988 aa25.72■■□□□ 1.71
SMC4-221ENST00000489573 GAKO14976 1311 aa25.72■■□□□ 1.71
SMC4-221ENST00000489573 HMGB1P09429 215 aaKnown RBP25.72■■□□□ 1.71
SMC4-221ENST00000489573 RPS6KB1P23443 525 aa25.72■■□□□ 1.71
SMC4-221ENST00000489573 IARSP41252 1262 aaKnown RBP25.72■■□□□ 1.71
SMC4-221ENST00000489573 GIMAP6Q6P9H5 292 aa25.72■■□□□ 1.71
SMC4-221ENST00000489573 MYH2Q9UKX2 1941 aa25.72■■□□□ 1.71
SMC4-221ENST00000489573 FER1L6Q2WGJ9 1857 aa25.71■■□□□ 1.71
SMC4-221ENST00000489573 GPR75-ASB3A0A0A6YYF3 556 aa25.71■■□□□ 1.71
SMC4-221ENST00000489573 YDJCA8MPS7 323 aa25.71■■□□□ 1.71
SMC4-221ENST00000489573 TTF2Q9UNY4 1162 aaKnown RBP25.71■■□□□ 1.71
SMC4-221ENST00000489573 ZNF646O15015 1829 aaPredicted RBP25.71■■□□□ 1.71
SMC4-221ENST00000489573 F8W031 263 aaPredicted RBP25.7■■□□□ 1.71
SMC4-221ENST00000489573 BTDP43251 543 aa25.7■■□□□ 1.71
SMC4-221ENST00000489573 AK2P54819 239 aa25.69■■□□□ 1.7
SMC4-221ENST00000489573 NBPF3Q9H094 633 aa25.69■■□□□ 1.7
SMC4-221ENST00000489573 ATP8A2Q9NTI2 1148 aa25.69■■□□□ 1.7
SMC4-221ENST00000489573 COL4A5P29400 1685 aa25.69■■□□□ 1.7
SMC4-221ENST00000489573 TIAM2Q8IVF5 1701 aa25.69■■□□□ 1.7
SMC4-221ENST00000489573 COL9A3Q14050 684 aaPredicted RBP25.69■■□□□ 1.7
SMC4-221ENST00000489573 NIM1KQ8IY84 436 aa25.69■■□□□ 1.7
SMC4-221ENST00000489573 SH3RF3Q8TEJ3 882 aaPredicted RBP25.69■■□□□ 1.7
SMC4-221ENST00000489573 DAGLAQ9Y4D2 1042 aa25.69■■□□□ 1.7
SMC4-221ENST00000489573 NFKBIEO00221 500 aa25.68■■□□□ 1.7
SMC4-221ENST00000489573 PLCG2P16885 1265 aa25.68■■□□□ 1.7
SMC4-221ENST00000489573 TBC1D10CQ8IV04 446 aa25.68■■□□□ 1.7
SMC4-221ENST00000489573 FHDC1Q9C0D6 1143 aaPredicted RBP25.68■■□□□ 1.7
SMC4-221ENST00000489573 ALDH8A1Q9H2A2 487 aaPredicted RBP25.68■■□□□ 1.7
SMC4-221ENST00000489573 ARFGEF1Q9Y6D6 1849 aa25.68■■□□□ 1.7
SMC4-221ENST00000489573 LTBP3Q9NS15 1303 aa25.68■■□□□ 1.7
SMC4-221ENST00000489573 NOL8Q76FK4 1167 aaKnown RBP25.67■■□□□ 1.7
SMC4-221ENST00000489573 DCP1AQ9NPI6 582 aaPredicted RBP25.67■■□□□ 1.7
SMC4-221ENST00000489573 PSME4Q14997 1843 aa25.67■■□□□ 1.7
SMC4-221ENST00000489573 HHIPL2Q6UWX4 724 aa25.66■■□□□ 1.7
SMC4-221ENST00000489573 DHX32Q7L7V1 743 aaKnown RBP25.66■■□□□ 1.7
SMC4-221ENST00000489573 NCOA7Q8NI08 942 aa25.66■■□□□ 1.7
SMC4-221ENST00000489573 USP5P45974 858 aa25.65■■□□□ 1.7
SMC4-221ENST00000489573 PPARAQ07869 468 aa25.65■■□□□ 1.7
SMC4-221ENST00000489573 RALYLQ86SE5 291 aaKnown RBP25.65■■□□□ 1.7
SMC4-221ENST00000489573 TEKT1Q969V4 418 aa25.65■■□□□ 1.7
SMC4-221ENST00000489573 TMX3Q96JJ7 454 aa25.65■■□□□ 1.7
SMC4-221ENST00000489573 TCEANC2Q96MN5 208 aa25.65■■□□□ 1.7
SMC4-221ENST00000489573 ZNRF3Q9ULT6 936 aa25.65■■□□□ 1.7
SMC4-221ENST00000489573 HSP90AA1P07900 732 aaKnown RBP25.65■■□□□ 1.7
SMC4-221ENST00000489573 SCNN1DP51172 638 aa25.65■■□□□ 1.7
SMC4-221ENST00000489573 TRDNQ13061 729 aa25.65■■□□□ 1.7
SMC4-221ENST00000489573 ANKRD1Q15327 319 aa25.65■■□□□ 1.7
SMC4-221ENST00000489573 KIAA0825Q8IV33 1275 aa25.65■■□□□ 1.7
SMC4-221ENST00000489573 SPRYD3Q8NCJ5 442 aa25.65■■□□□ 1.7
SMC4-221ENST00000489573 ANAPC4Q9UJX5 808 aa25.65■■□□□ 1.7
SMC4-221ENST00000489573 MYO3BQ8WXR4 1341 aa25.64■■□□□ 1.7
SMC4-221ENST00000489573 HDLBPQ00341 1268 aaKnown RBP25.64■■□□□ 1.69
SMC4-221ENST00000489573 CTDSPL2Q05D32 466 aa25.64■■□□□ 1.69
SMC4-221ENST00000489573 CTR9Q6PD62 1173 aa25.64■■□□□ 1.69
SMC4-221ENST00000489573 MRIQ9BWK5 157 aa25.64■■□□□ 1.69
SMC4-221ENST00000489573 ARPP21Q9UBL0 812 aaPredicted RBP25.64■■□□□ 1.69
SMC4-221ENST00000489573 LIMCH1Q9UPQ0 1083 aa25.64■■□□□ 1.69
SMC4-221ENST00000489573 RHBDL3P58872 404 aa25.63■■□□□ 1.69
SMC4-221ENST00000489573 EXOSC10Q01780 885 aaKnown RBP25.63■■□□□ 1.69
SMC4-221ENST00000489573 AKNAD1Q5T1N1 836 aa25.63■■□□□ 1.69
SMC4-221ENST00000489573 MB21D2Q8IYB1 491 aaPredicted RBP25.63■■□□□ 1.69
SMC4-221ENST00000489573 TEX11Q8IYF3 940 aa25.63■■□□□ 1.69
SMC4-221ENST00000489573 STAG1Q8WVM7 1258 aa25.63■■□□□ 1.69
SMC4-221ENST00000489573 MINDY4BA8MYZ0 360 aa25.62■■□□□ 1.69
SMC4-221ENST00000489573 RAD17O75943 681 aa25.62■■□□□ 1.69
SMC4-221ENST00000489573 CRKP46108 304 aa25.62■■□□□ 1.69
SMC4-221ENST00000489573 RSBN1LQ6PCB5 846 aaPredicted RBP25.62■■□□□ 1.69
SMC4-221ENST00000489573 JDP2Q8WYK2 163 aa25.62■■□□□ 1.69
SMC4-221ENST00000489573 MKRN1Q9UHC7 482 aaKnown RBP25.62■■□□□ 1.69
SMC4-221ENST00000489573 USP17L12C9JPN9 530 aa25.61■■□□□ 1.69
SMC4-221ENST00000489573 USP17L21D6R901 530 aa25.61■■□□□ 1.69
SMC4-221ENST00000489573 PSMD14O00487 310 aa25.61■■□□□ 1.69
SMC4-221ENST00000489573 VIL1P09327 827 aaKnown RBP25.61■■□□□ 1.69
SMC4-221ENST00000489573 TOB2Q14106 344 aaPredicted RBP25.61■■□□□ 1.69
SMC4-221ENST00000489573 SBK1Q52WX2 424 aa25.61■■□□□ 1.69
SMC4-221ENST00000489573 Q6ZUG5 572 aa25.61■■□□□ 1.69
SMC4-221ENST00000489573 TGFBRAP1Q8WUH2 860 aa25.61■■□□□ 1.69
SMC4-221ENST00000489573 RNF41Q9H4P4 317 aaPredicted RBP25.61■■□□□ 1.69
SMC4-221ENST00000489573 CNNM2Q9H8M5 875 aa25.61■■□□□ 1.69
SMC4-221ENST00000489573 NEDD4P46934 1319 aa25.61■■□□□ 1.69
SMC4-221ENST00000489573 BAZ2AQ9UIF9 1905 aaKnown RBP25.61■■□□□ 1.69
SMC4-221ENST00000489573 MCM5P33992 734 aa25.61■■□□□ 1.69
SMC4-221ENST00000489573 RASSF7Q02833 373 aa25.61■■□□□ 1.69
Retrieved 100 of 20,778 RNA–protein pairs in 143.1 ms