RNA–Protein interactions for RNA: ENST00000488896.1

PTPN4-212, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 4

Gene PTPN4, Length 575 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-212ENST00000488896 FAM105AQ9NUU6 356 aa8.73□□□□□ -1.01
PTPN4-212ENST00000488896 RNF19AQ9NV58 838 aa8.73□□□□□ -1.01
PTPN4-212ENST00000488896 PPP1R9AQ9ULJ8 1098 aa8.73□□□□□ -1.01
PTPN4-212ENST00000488896 WDR64B1ANS9 1081 aa8.72□□□□□ -1.01
PTPN4-212ENST00000488896 NFICP08651 508 aa8.72□□□□□ -1.01
PTPN4-212ENST00000488896 USP17L7P0C7H9 530 aa8.72□□□□□ -1.01
PTPN4-212ENST00000488896 EAPPQ56P03 285 aaPredicted RBP8.72□□□□□ -1.01
PTPN4-212ENST00000488896 ARTNQ5T4W7 220 aa8.72□□□□□ -1.01
PTPN4-212ENST00000488896 PAOXQ6QHF9 649 aa8.72□□□□□ -1.01
PTPN4-212ENST00000488896 SLC51AQ86UW1 340 aa8.72□□□□□ -1.01
PTPN4-212ENST00000488896 SHKBP1Q8TBC3 707 aa8.72□□□□□ -1.01
PTPN4-212ENST00000488896 YIPF2Q9BWQ6 316 aa8.72□□□□□ -1.01
PTPN4-212ENST00000488896 SRCIN1Q9C0H9 1055 aa8.72□□□□□ -1.01
PTPN4-212ENST00000488896 C12orf49Q9H741 205 aa8.72□□□□□ -1.01
PTPN4-212ENST00000488896 GIPC1O14908 333 aa8.71□□□□□ -1.02
PTPN4-212ENST00000488896 HYAL3O43820 417 aaPredicted RBP8.71□□□□□ -1.02
PTPN4-212ENST00000488896 ZNF862O60290 1169 aa8.71□□□□□ -1.02
PTPN4-212ENST00000488896 LRP8Q14114 963 aa8.71□□□□□ -1.02
PTPN4-212ENST00000488896 MAP1SQ66K74 1059 aaPredicted RBP8.71□□□□□ -1.02
PTPN4-212ENST00000488896 ZDHHC13Q8IUH4 622 aa8.71□□□□□ -1.02
PTPN4-212ENST00000488896 SLFN14P0C7P3 912 aa8.7□□□□□ -1.02
PTPN4-212ENST00000488896 ARNTP27540 789 aa8.7□□□□□ -1.02
PTPN4-212ENST00000488896 SHISA5Q8N114 240 aa8.7□□□□□ -1.02
PTPN4-212ENST00000488896 NECAB3Q96P71 396 aaPredicted RBP8.7□□□□□ -1.02
PTPN4-212ENST00000488896 DUSP9Q99956 384 aaKnown RBP8.7□□□□□ -1.02
PTPN4-212ENST00000488896 DAGLAQ9Y4D2 1042 aa8.7□□□□□ -1.02
PTPN4-212ENST00000488896 PRPF40AO75400 957 aaKnown RBP8.69□□□□□ -1.02
PTPN4-212ENST00000488896 PAGE1O75459 146 aa8.69□□□□□ -1.02
PTPN4-212ENST00000488896 NME2P22392 152 aa8.69□□□□□ -1.02
PTPN4-212ENST00000488896 MPRIPQ6WCQ1 1025 aa8.69□□□□□ -1.02
PTPN4-212ENST00000488896 PDZD3Q86UT5 571 aa8.69□□□□□ -1.02
PTPN4-212ENST00000488896 CEP44Q9C0F1 390 aa8.69□□□□□ -1.02
PTPN4-212ENST00000488896 ATG3Q9NT62 314 aa8.69□□□□□ -1.02
PTPN4-212ENST00000488896 PCMTD2Q9NV79 361 aa8.69□□□□□ -1.02
PTPN4-212ENST00000488896 FAM8A1Q9UBU6 413 aa8.69□□□□□ -1.02
PTPN4-212ENST00000488896 TTF2Q9UNY4 1162 aaKnown RBP8.69□□□□□ -1.02
PTPN4-212ENST00000488896 ENC1O14682 589 aa8.68□□□□□ -1.02
PTPN4-212ENST00000488896 TMPRSS2O15393 492 aa8.68□□□□□ -1.02
PTPN4-212ENST00000488896 EIF4BP23588 611 aaKnown RBP8.68□□□□□ -1.02
PTPN4-212ENST00000488896 GNA15P30679 374 aa8.68□□□□□ -1.02
PTPN4-212ENST00000488896 ID3Q02535 119 aa8.68□□□□□ -1.02
PTPN4-212ENST00000488896 NBPF11Q86T75 865 aa8.68□□□□□ -1.02
PTPN4-212ENST00000488896 GRIN3AQ8TCU5 1115 aa8.68□□□□□ -1.02
PTPN4-212ENST00000488896 ACSBG1Q96GR2 724 aa8.68□□□□□ -1.02
PTPN4-212ENST00000488896 TBC1D32Q96NH3 1257 aa8.68□□□□□ -1.02
PTPN4-212ENST00000488896 EMILIN2Q9BXX0 1053 aa8.68□□□□□ -1.02
PTPN4-212ENST00000488896 SEMA6CQ9H3T2 930 aa8.68□□□□□ -1.02
PTPN4-212ENST00000488896 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP8.67□□□□□ -1.02
PTPN4-212ENST00000488896 MED26O95402 600 aa8.67□□□□□ -1.02
PTPN4-212ENST00000488896 F13BP05160 661 aa8.67□□□□□ -1.02
PTPN4-212ENST00000488896 CELA3AP09093 270 aa8.67□□□□□ -1.02
PTPN4-212ENST00000488896 ADMP35318 185 aa8.67□□□□□ -1.02
PTPN4-212ENST00000488896 HNRNPUQ00839 825 aaKnown RBP eCLIP8.67□□□□□ -1.02
PTPN4-212ENST00000488896 MAP7Q14244 749 aa8.67□□□□□ -1.02
PTPN4-212ENST00000488896 DNAJC14Q6Y2X3 702 aaPredicted RBP8.67□□□□□ -1.02
PTPN4-212ENST00000488896 NPAS4Q8IUM7 802 aa8.67□□□□□ -1.02
PTPN4-212ENST00000488896 GPBAR1Q8TDU6 330 aa8.67□□□□□ -1.02
PTPN4-212ENST00000488896 EZH1Q92800 747 aaPredicted RBP8.67□□□□□ -1.02
PTPN4-212ENST00000488896 ACSS3Q9H6R3 686 aa8.67□□□□□ -1.02
PTPN4-212ENST00000488896 PIDD1Q9HB75 910 aa8.67□□□□□ -1.02
PTPN4-212ENST00000488896 KRT82Q9NSB4 513 aa8.67□□□□□ -1.02
PTPN4-212ENST00000488896 PPM1HQ9ULR3 514 aa8.67□□□□□ -1.02
PTPN4-212ENST00000488896 PRR19A6NJB7 356 aa8.66□□□□□ -1.02
PTPN4-212ENST00000488896 RNGTTO60942 597 aaKnown RBP8.66□□□□□ -1.02
PTPN4-212ENST00000488896 COBLO75128 1261 aa8.66□□□□□ -1.02
PTPN4-212ENST00000488896 CCDC27Q2M243 656 aa8.66□□□□□ -1.02
PTPN4-212ENST00000488896 KIF4BQ2VIQ3 1234 aa8.66□□□□□ -1.02
PTPN4-212ENST00000488896 GIMAP7Q8NHV1 300 aa8.66□□□□□ -1.02
PTPN4-212ENST00000488896 FANCD2OSQ96PS1 177 aa8.66□□□□□ -1.02
PTPN4-212ENST00000488896 OSBPL1AQ9BXW6 950 aa8.66□□□□□ -1.02
PTPN4-212ENST00000488896 CRIM1Q9NZV1 1036 aa8.66□□□□□ -1.02
PTPN4-212ENST00000488896 PRKAG2Q9UGJ0 569 aa8.66□□□□□ -1.02
PTPN4-212ENST00000488896 SAMM50Q9Y512 469 aa8.66□□□□□ -1.02
PTPN4-212ENST00000488896 DYNC1LI2O43237 492 aaPredicted RBP8.65□□□□□ -1.02
PTPN4-212ENST00000488896 HCLS1P14317 486 aaPredicted RBP8.65□□□□□ -1.02
PTPN4-212ENST00000488896 BMP6P22004 513 aa8.65□□□□□ -1.02
PTPN4-212ENST00000488896 COL19A1Q14993 1142 aa8.65□□□□□ -1.02
PTPN4-212ENST00000488896 FRMD6Q96NE9 622 aa8.65□□□□□ -1.02
PTPN4-212ENST00000488896 ATXN3LQ9H3M9 355 aa8.65□□□□□ -1.02
PTPN4-212ENST00000488896 PARP2Q9UGN5 583 aa8.65□□□□□ -1.02
PTPN4-212ENST00000488896 CSADQ9Y600 493 aa8.65□□□□□ -1.02
PTPN4-212ENST00000488896 GRIK1P39086 918 aa8.64□□□□□ -1.03
PTPN4-212ENST00000488896 ZNF252P-AS1Q0IIN9 211 aa8.64□□□□□ -1.03
PTPN4-212ENST00000488896 TTLL4Q14679 1199 aa8.64□□□□□ -1.03
PTPN4-212ENST00000488896 RASIP1Q5U651 963 aa8.64□□□□□ -1.03
PTPN4-212ENST00000488896 FAM161BQ96MY7 647 aa8.64□□□□□ -1.03
PTPN4-212ENST00000488896 GSX1Q9H4S2 264 aaPredicted RBP8.64□□□□□ -1.03
PTPN4-212ENST00000488896 DISC1Q9NRI5 854 aa8.64□□□□□ -1.03
PTPN4-212ENST00000488896 LEMD3Q9Y2U8 911 aa8.64□□□□□ -1.03
PTPN4-212ENST00000488896 PCDHGC5Q9Y5F6 944 aa8.64□□□□□ -1.03
PTPN4-212ENST00000488896 AK5Q9Y6K8 562 aa8.64□□□□□ -1.03
PTPN4-212ENST00000488896 SYNGAP1Q96PV0 1343 aa8.63□□□□□ -1.03
PTPN4-212ENST00000488896 FAM170BA6NMN3 283 aa8.63□□□□□ -1.03
PTPN4-212ENST00000488896 HOXA10P31260 410 aaPredicted RBP8.63□□□□□ -1.03
PTPN4-212ENST00000488896 CD97P48960 835 aa8.63□□□□□ -1.03
PTPN4-212ENST00000488896 FGD1P98174 961 aa8.63□□□□□ -1.03
PTPN4-212ENST00000488896 PSMD2Q13200 908 aa8.63□□□□□ -1.03
PTPN4-212ENST00000488896 PCNX4Q63HM2 1172 aa8.63□□□□□ -1.03
PTPN4-212ENST00000488896 LLGL2Q6P1M3 1020 aa8.63□□□□□ -1.03
PTPN4-212ENST00000488896 ZAR1Q86SH2 424 aa8.63□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms