RNA–Protein interactions for RNA: ENST00000479656.5

APTX-223, Transcript of aprataxin, human

TSL 1 (best)

Gene APTX, Length 1,881 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
APTX-223	ENST00000479656	SPRYD3	Q8NCJ5	442 aa		13.34	□□□□□ -0.27
APTX-223	ENST00000479656	TTF2	Q9UNY4	1162 aa	Known RBP	13.34	□□□□□ -0.27
APTX-223	ENST00000479656	BRCA1	P38398	1863 aa	Known RBP	13.34	□□□□□ -0.27
APTX-223	ENST00000479656	RPAP1	Q9BWH6	1393 aa	Predicted RBP	13.34	□□□□□ -0.27
APTX-223	ENST00000479656		K7ELQ4	463 aa	Predicted RBP	13.33	□□□□□ -0.27
APTX-223	ENST00000479656	BAG3	O95817	575 aa		13.33	□□□□□ -0.27
APTX-223	ENST00000479656	IARS	P41252	1262 aa	Known RBP	13.33	□□□□□ -0.27
APTX-223	ENST00000479656	TDO2	P48775	406 aa		13.33	□□□□□ -0.27
APTX-223	ENST00000479656	PPP4C	P60510	307 aa		13.33	□□□□□ -0.27
APTX-223	ENST00000479656	SLF2	Q8IX21	1173 aa		13.33	□□□□□ -0.27
APTX-223	ENST00000479656	FAM163A	Q96GL9	167 aa	Predicted RBP	13.33	□□□□□ -0.27
APTX-223	ENST00000479656	TTC14	Q96N46	770 aa		13.33	□□□□□ -0.27
APTX-223	ENST00000479656	NOL10	Q9BSC4	688 aa	Known RBP	13.33	□□□□□ -0.27
APTX-223	ENST00000479656	CRNKL1	Q9BZJ0	848 aa	Known RBP	13.33	□□□□□ -0.27
APTX-223	ENST00000479656	TAOK3	Q9H2K8	898 aa		13.33	□□□□□ -0.27
APTX-223	ENST00000479656	PDRG1	Q9NUG6	133 aa		13.33	□□□□□ -0.27
APTX-223	ENST00000479656	GOLGB1	Q14789	3259 aa	Known RBP	13.33	□□□□□ -0.28
APTX-223	ENST00000479656	GPR75-ASB3	A0A0A6YYF3	556 aa		13.33	□□□□□ -0.28
APTX-223	ENST00000479656	NFKBIE	O00221	500 aa		13.33	□□□□□ -0.28
APTX-223	ENST00000479656	BTD	P43251	543 aa		13.33	□□□□□ -0.28
APTX-223	ENST00000479656	SCNN1D	P51172	638 aa		13.33	□□□□□ -0.28
APTX-223	ENST00000479656	FKBP1A	P62942	108 aa	Known RBP	13.33	□□□□□ -0.28
APTX-223	ENST00000479656	NOL8	Q76FK4	1167 aa	Known RBP	13.33	□□□□□ -0.28
APTX-223	ENST00000479656	SH3RF3	Q8TEJ3	882 aa	Predicted RBP	13.33	□□□□□ -0.28
APTX-223	ENST00000479656	MAST2	Q6P0Q8	1798 aa		13.32	□□□□□ -0.28
APTX-223	ENST00000479656	RAD17	O75943	681 aa		13.32	□□□□□ -0.28
APTX-223	ENST00000479656	RPS6KB1	P23443	525 aa		13.32	□□□□□ -0.28
APTX-223	ENST00000479656	AK2	P54819	239 aa		13.32	□□□□□ -0.28
APTX-223	ENST00000479656	KIAA0825	Q8IV33	1275 aa		13.32	□□□□□ -0.28
APTX-223	ENST00000479656	TCEANC2	Q96MN5	208 aa		13.32	□□□□□ -0.28
APTX-223	ENST00000479656	LARP6	Q9BRS8	491 aa	Known RBP	13.32	□□□□□ -0.28
APTX-223	ENST00000479656	NBPF3	Q9H094	633 aa		13.32	□□□□□ -0.28
APTX-223	ENST00000479656	SCN9A	Q15858	1988 aa		13.32	□□□□□ -0.28
APTX-223	ENST00000479656	GAK	O14976	1311 aa		13.32	□□□□□ -0.28
APTX-223	ENST00000479656	ZMYM6	O95789	1325 aa		13.32	□□□□□ -0.28
APTX-223	ENST00000479656	CTDSPL2	Q05D32	466 aa		13.31	□□□□□ -0.28
APTX-223	ENST00000479656	NIM1K	Q8IY84	436 aa		13.31	□□□□□ -0.28
APTX-223	ENST00000479656	IL27	Q8NEV9	243 aa		13.31	□□□□□ -0.28
APTX-223	ENST00000479656	DCP1A	Q9NPI6	582 aa	Predicted RBP	13.31	□□□□□ -0.28
APTX-223	ENST00000479656	INCENP	Q9NQS7	918 aa		13.31	□□□□□ -0.28
APTX-223	ENST00000479656	ZNRF3	Q9ULT6	936 aa		13.31	□□□□□ -0.28
APTX-223	ENST00000479656	DAGLA	Q9Y4D2	1042 aa		13.31	□□□□□ -0.28
APTX-223	ENST00000479656	COL4A5	P29400	1685 aa		13.31	□□□□□ -0.28
APTX-223	ENST00000479656	MYH2	Q9UKX2	1941 aa		13.31	□□□□□ -0.28
APTX-223	ENST00000479656	MINDY4B	A8MYZ0	360 aa		13.31	□□□□□ -0.28
APTX-223	ENST00000479656	MCM2	P49736	904 aa		13.31	□□□□□ -0.28
APTX-223	ENST00000479656	TBC1D10C	Q8IV04	446 aa		13.31	□□□□□ -0.28
APTX-223	ENST00000479656	STK11IP	Q8N1F8	1099 aa		13.31	□□□□□ -0.28
APTX-223	ENST00000479656	SYT17	Q9BSW7	474 aa		13.31	□□□□□ -0.28
APTX-223	ENST00000479656	ATP8A2	Q9NTI2	1148 aa		13.31	□□□□□ -0.28
APTX-223	ENST00000479656	USP17L12	C9JPN9	530 aa		13.3	□□□□□ -0.28
APTX-223	ENST00000479656	USP17L21	D6R901	530 aa		13.3	□□□□□ -0.28
APTX-223	ENST00000479656	PSMD14	O00487	310 aa		13.3	□□□□□ -0.28
APTX-223	ENST00000479656	HMGB1	P09429	215 aa	Known RBP	13.3	□□□□□ -0.28
APTX-223	ENST00000479656	USP5	P45974	858 aa		13.3	□□□□□ -0.28
APTX-223	ENST00000479656	RASSF7	Q02833	373 aa		13.3	□□□□□ -0.28
APTX-223	ENST00000479656	GIMAP6	Q6P9H5	292 aa		13.3	□□□□□ -0.28
APTX-223	ENST00000479656	CTR9	Q6PD62	1173 aa		13.3	□□□□□ -0.28
APTX-223	ENST00000479656	TGFBRAP1	Q8WUH2	860 aa		13.3	□□□□□ -0.28
APTX-223	ENST00000479656	FER1L6	Q2WGJ9	1857 aa		13.3	□□□□□ -0.28
APTX-223	ENST00000479656	CYP2D7	A0A087X1C5	515 aa		13.29	□□□□□ -0.28
APTX-223	ENST00000479656	SMIM22	K7EJ46	135 aa		13.29	□□□□□ -0.28
APTX-223	ENST00000479656	CRK	P46108	304 aa		13.29	□□□□□ -0.28
APTX-223	ENST00000479656	RHBDL3	P58872	404 aa		13.29	□□□□□ -0.28
APTX-223	ENST00000479656	EXOSC10	Q01780	885 aa	Known RBP	13.29	□□□□□ -0.28
APTX-223	ENST00000479656	PPARA	Q07869	468 aa		13.29	□□□□□ -0.28
APTX-223	ENST00000479656	HHIPL2	Q6UWX4	724 aa		13.29	□□□□□ -0.28
APTX-223	ENST00000479656	DHX32	Q7L7V1	743 aa	Known RBP	13.29	□□□□□ -0.28
APTX-223	ENST00000479656	CHST3	Q7LGC8	479 aa		13.29	□□□□□ -0.28
APTX-223	ENST00000479656	NCOA7	Q8NI08	942 aa		13.29	□□□□□ -0.28
APTX-223	ENST00000479656	JDP2	Q8WYK2	163 aa		13.29	□□□□□ -0.28
APTX-223	ENST00000479656	TEKT1	Q969V4	418 aa		13.29	□□□□□ -0.28
APTX-223	ENST00000479656	TMX3	Q96JJ7	454 aa		13.29	□□□□□ -0.28
APTX-223	ENST00000479656	FOXD4L1	Q9NU39	408 aa		13.29	□□□□□ -0.28
APTX-223	ENST00000479656	TACC3	Q9Y6A5	838 aa		13.29	□□□□□ -0.28
APTX-223	ENST00000479656	VIL1	P09327	827 aa	Known RBP	13.29	□□□□□ -0.28
APTX-223	ENST00000479656	PLCG2	P16885	1265 aa		13.29	□□□□□ -0.28
APTX-223	ENST00000479656	PRELP	P51888	382 aa		13.29	□□□□□ -0.28
APTX-223	ENST00000479656	RSBN1L	Q6PCB5	846 aa	Predicted RBP	13.29	□□□□□ -0.28
APTX-223	ENST00000479656	CERS3	Q8IU89	383 aa		13.29	□□□□□ -0.28
APTX-223	ENST00000479656	TEX11	Q8IYF3	940 aa		13.29	□□□□□ -0.28
APTX-223	ENST00000479656	NKX2-3	Q8TAU0	364 aa		13.29	□□□□□ -0.28
APTX-223	ENST00000479656	MRI	Q9BWK5	157 aa		13.29	□□□□□ -0.28
APTX-223	ENST00000479656	LRRC2	Q9BYS8	371 aa		13.29	□□□□□ -0.28
APTX-223	ENST00000479656	ALDH8A1	Q9H2A2	487 aa	Predicted RBP	13.29	□□□□□ -0.28
APTX-223	ENST00000479656	MKRN1	Q9UHC7	482 aa	Known RBP	13.29	□□□□□ -0.28
APTX-223	ENST00000479656	ZBTB12	Q9Y330	459 aa	Predicted RBP	13.29	□□□□□ -0.28
APTX-223	ENST00000479656	PCDHAC2	Q9Y5I4	1007 aa		13.29	□□□□□ -0.28
APTX-223	ENST00000479656	USP17L8	P0C7I0	530 aa		13.28	□□□□□ -0.28
APTX-223	ENST00000479656	RBM5	P52756	815 aa	Known RBP eCLIP	13.28	□□□□□ -0.28
APTX-223	ENST00000479656	EVX2	Q03828	476 aa		13.28	□□□□□ -0.28
APTX-223	ENST00000479656	CXCL9	Q07325	125 aa		13.28	□□□□□ -0.28
APTX-223	ENST00000479656	TRDN	Q13061	729 aa		13.28	□□□□□ -0.28
APTX-223	ENST00000479656	TOB2	Q14106	344 aa	Predicted RBP	13.28	□□□□□ -0.28
APTX-223	ENST00000479656	AKNAD1	Q5T1N1	836 aa		13.28	□□□□□ -0.28
APTX-223	ENST00000479656	APOBEC3H	Q6NTF7	200 aa	Known RBP	13.28	□□□□□ -0.28
APTX-223	ENST00000479656		Q6ZUG5	572 aa		13.28	□□□□□ -0.28
APTX-223	ENST00000479656	ARHGAP27	Q6ZUM4	889 aa		13.28	□□□□□ -0.28
APTX-223	ENST00000479656	RALYL	Q86SE5	291 aa	Known RBP	13.28	□□□□□ -0.28
APTX-223	ENST00000479656	MAPKAPK5	Q8IW41	473 aa		13.28	□□□□□ -0.28

Retrieved 100 of 20,778 RNA–protein pairs in 26 ms