RNA–Protein interactions for RNA: ENST00000479168.5

LIMS3-202, Transcript of LIM zinc finger domain containing 3, humanhuman

TSL 2

Gene LIMS3, Length 626 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-202ENST00000479168 BTDP43251 543 aa17.77■□□□□ 0.44
LIMS3-202ENST00000479168 RASA3Q14644 834 aa17.77■□□□□ 0.44
LIMS3-202ENST00000479168 ZSCAN25Q6NSZ9 544 aa17.77■□□□□ 0.44
LIMS3-202ENST00000479168 PCDHAC2Q9Y5I4 1007 aa17.77■□□□□ 0.44
LIMS3-202ENST00000479168 TLL2Q9Y6L7 1015 aa17.77■□□□□ 0.44
LIMS3-202ENST00000479168 GOLIM4O00461 696 aa17.76■□□□□ 0.43
LIMS3-202ENST00000479168 PPP1R12BO60237 982 aaPredicted RBP17.76■□□□□ 0.43
LIMS3-202ENST00000479168 CDC42EP5Q6NZY7 148 aa17.76■□□□□ 0.43
LIMS3-202ENST00000479168 ARMC9Q7Z3E5 817 aa17.76■□□□□ 0.43
LIMS3-202ENST00000479168 BOLA2Q9H3K6 86 aa17.76■□□□□ 0.43
LIMS3-202ENST00000479168 PIH1D3Q9NQM4 214 aaKnown RBP17.76■□□□□ 0.43
LIMS3-202ENST00000479168 USP40Q9NVE5 1235 aa17.76■□□□□ 0.43
LIMS3-202ENST00000479168 RASSF10A6NK89 507 aa17.75■□□□□ 0.43
LIMS3-202ENST00000479168 TCP10L2B9ZVM9 353 aa17.75■□□□□ 0.43
LIMS3-202ENST00000479168 ECE1P42892 770 aa17.75■□□□□ 0.43
LIMS3-202ENST00000479168 CST9Q5W186 159 aa17.75■□□□□ 0.43
LIMS3-202ENST00000479168 CHD1LQ86WJ1 897 aa17.75■□□□□ 0.43
LIMS3-202ENST00000479168 IDI2Q9BXS1 227 aa17.75■□□□□ 0.43
LIMS3-202ENST00000479168 MAST2Q6P0Q8 1798 aa17.75■□□□□ 0.43
LIMS3-202ENST00000479168 CNTNAP1P78357 1384 aa17.75■□□□□ 0.43
LIMS3-202ENST00000479168 AOX1Q06278 1338 aa17.74■□□□□ 0.43
LIMS3-202ENST00000479168 UNCXA6NJT0 531 aa17.74■□□□□ 0.43
LIMS3-202ENST00000479168 ENTPD3O75355 529 aa17.74■□□□□ 0.43
LIMS3-202ENST00000479168 NPM3O75607 178 aaKnown RBP17.74■□□□□ 0.43
LIMS3-202ENST00000479168 CYP7A1P22680 504 aa17.74■□□□□ 0.43
LIMS3-202ENST00000479168 NUCB1Q02818 461 aa17.74■□□□□ 0.43
LIMS3-202ENST00000479168 SAPCD2Q86UD0 394 aa17.74■□□□□ 0.43
LIMS3-202ENST00000479168 PAPPA2Q9BXP8 1791 aa17.74■□□□□ 0.43
LIMS3-202ENST00000479168 IGHDP01880 384 aa17.73■□□□□ 0.43
LIMS3-202ENST00000479168 PPP4CP60510 307 aa17.73■□□□□ 0.43
LIMS3-202ENST00000479168 TTLL12Q14166 644 aaPredicted RBP17.73■□□□□ 0.43
LIMS3-202ENST00000479168 DCAF15Q66K64 600 aa17.73■□□□□ 0.43
LIMS3-202ENST00000479168 MAGEB6Q8N7X4 407 aa17.73■□□□□ 0.43
LIMS3-202ENST00000479168 FAM151AQ8WW52 585 aa17.73■□□□□ 0.43
LIMS3-202ENST00000479168 ECM29Q5VYK3 1845 aa17.72■□□□□ 0.43
LIMS3-202ENST00000479168 HUNKP57058 714 aa17.72■□□□□ 0.43
LIMS3-202ENST00000479168 DEFB115Q30KQ5 88 aa17.72■□□□□ 0.43
LIMS3-202ENST00000479168 SLC9C2Q5TAH2 1124 aa17.72■□□□□ 0.43
LIMS3-202ENST00000479168 ZNF384Q8TF68 577 aa17.72■□□□□ 0.43
LIMS3-202ENST00000479168 KLRG1Q96E93 195 aa17.72■□□□□ 0.43
LIMS3-202ENST00000479168 LNPKQ9C0E8 428 aa17.72■□□□□ 0.43
LIMS3-202ENST00000479168 ANTXR1Q9H6X2 564 aa17.72■□□□□ 0.43
LIMS3-202ENST00000479168 STAP2Q9UGK3 403 aa17.72■□□□□ 0.43
LIMS3-202ENST00000479168 COL2A1P02458 1487 aaPredicted RBP17.71■□□□□ 0.43
LIMS3-202ENST00000479168 RFX7Q2KHR2 1363 aa17.71■□□□□ 0.43
LIMS3-202ENST00000479168 ZFYP08048 801 aaPredicted RBP17.71■□□□□ 0.43
LIMS3-202ENST00000479168 PDE6AP16499 860 aa17.71■□□□□ 0.43
LIMS3-202ENST00000479168 IREB2P48200 963 aaKnown RBP17.71■□□□□ 0.43
LIMS3-202ENST00000479168 FMR1Q06787 632 aaKnown RBP eCLIP17.71■□□□□ 0.43
LIMS3-202ENST00000479168 TICAM2Q86XR7 235 aa17.71■□□□□ 0.43
LIMS3-202ENST00000479168 TEX11Q8IYF3 940 aa17.71■□□□□ 0.43
LIMS3-202ENST00000479168 TMEM39BQ9GZU3 492 aa17.71■□□□□ 0.43
LIMS3-202ENST00000479168 NDUFB9Q9Y6M9 179 aa17.71■□□□□ 0.43
LIMS3-202ENST00000479168 SALL3Q9BXA9 1300 aa17.71■□□□□ 0.42
LIMS3-202ENST00000479168 CACNB3P54284 484 aa17.7■□□□□ 0.42
LIMS3-202ENST00000479168 PDE1AP54750 535 aa17.7■□□□□ 0.42
LIMS3-202ENST00000479168 RHBDL3P58872 404 aa17.7■□□□□ 0.42
LIMS3-202ENST00000479168 UBE3CQ15386 1083 aa17.7■□□□□ 0.42
LIMS3-202ENST00000479168 B4GALNT3Q6L9W6 998 aa17.7■□□□□ 0.42
LIMS3-202ENST00000479168 PAXIP1Q6ZW49 1069 aaPredicted RBP17.7■□□□□ 0.42
LIMS3-202ENST00000479168 KBTBD3Q8NAB2 608 aa17.7■□□□□ 0.42
LIMS3-202ENST00000479168 PI4K2BQ8TCG2 481 aa17.7■□□□□ 0.42
LIMS3-202ENST00000479168 CCDC102AQ96A19 550 aa17.7■□□□□ 0.42
LIMS3-202ENST00000479168 AATFQ9NY61 560 aaKnown RBP eCLIP17.7■□□□□ 0.42
LIMS3-202ENST00000479168 SCAF8Q9UPN6 1271 aaKnown RBP17.7■□□□□ 0.42
LIMS3-202ENST00000479168 AKAP11Q9UKA4 1901 aa17.7■□□□□ 0.42
LIMS3-202ENST00000479168 TRPM7Q96QT4 1865 aa17.69■□□□□ 0.42
LIMS3-202ENST00000479168 WDHD1O75717 1129 aaPredicted RBP17.69■□□□□ 0.42
LIMS3-202ENST00000479168 RGS3P49796 1198 aa17.69■□□□□ 0.42
LIMS3-202ENST00000479168 MAP3K11Q16584 847 aa17.69■□□□□ 0.42
LIMS3-202ENST00000479168 ZSCAN29Q8IWY8 852 aaPredicted RBP17.69■□□□□ 0.42
LIMS3-202ENST00000479168 TEPSINQ96N21 525 aa17.69■□□□□ 0.42
LIMS3-202ENST00000479168 MKRN1Q9UHC7 482 aaKnown RBP17.69■□□□□ 0.42
LIMS3-202ENST00000479168 MAGEB6P1A0A0J9YX57 407 aa17.68■□□□□ 0.42
LIMS3-202ENST00000479168 ADD2P35612 726 aa17.68■□□□□ 0.42
LIMS3-202ENST00000479168 HTRA3P83110 453 aa17.68■□□□□ 0.42
LIMS3-202ENST00000479168 TCP10Q12799 353 aa17.68■□□□□ 0.42
LIMS3-202ENST00000479168 NFIAQ12857 509 aa17.68■□□□□ 0.42
LIMS3-202ENST00000479168 NBPF12Q5TAG4 269 aaPredicted RBP17.68■□□□□ 0.42
LIMS3-202ENST00000479168 PRAMEF18Q5VWM3 479 aa17.68■□□□□ 0.42
LIMS3-202ENST00000479168 ERICH6BQ5W0A0 696 aa17.68■□□□□ 0.42
LIMS3-202ENST00000479168 TSHZ3Q63HK5 1081 aa17.68■□□□□ 0.42
LIMS3-202ENST00000479168 RGMBQ6NW40 437 aa17.68■□□□□ 0.42
LIMS3-202ENST00000479168 CENPQQ7L2Z9 268 aaPredicted RBP17.68■□□□□ 0.42
LIMS3-202ENST00000479168 CRNKL1Q9BZJ0 848 aaKnown RBP17.68■□□□□ 0.42
LIMS3-202ENST00000479168 DHX36Q9H2U1 1008 aaKnown RBP17.68■□□□□ 0.42
LIMS3-202ENST00000479168 FAM198AQ9UFP1 575 aa17.68■□□□□ 0.42
LIMS3-202ENST00000479168 ANGEL1Q9UNK9 670 aaKnown RBP17.68■□□□□ 0.42
LIMS3-202ENST00000479168 ZNF532Q9HCE3 1301 aa17.68■□□□□ 0.42
LIMS3-202ENST00000479168 ATRNL1Q5VV63 1379 aa17.67■□□□□ 0.42
LIMS3-202ENST00000479168 NOGQ13253 232 aa17.67■□□□□ 0.42
LIMS3-202ENST00000479168 PICALMQ13492 652 aa17.67■□□□□ 0.42
LIMS3-202ENST00000479168 DLK2Q6UY11 383 aa17.67■□□□□ 0.42
LIMS3-202ENST00000479168 OTUD7AQ8TE49 926 aaPredicted RBP17.67■□□□□ 0.42
LIMS3-202ENST00000479168 EVI5LQ96CN4 794 aa17.67■□□□□ 0.42
LIMS3-202ENST00000479168 EDC3Q96F86 508 aaKnown RBP17.67■□□□□ 0.42
LIMS3-202ENST00000479168 DDRGK1Q96HY6 314 aa17.67■□□□□ 0.42
LIMS3-202ENST00000479168 CAPNS2Q96L46 248 aa17.67■□□□□ 0.42
LIMS3-202ENST00000479168 CSRNP1Q96S65 589 aa17.67■□□□□ 0.42
LIMS3-202ENST00000479168 OSBPL3Q9H4L5 887 aa17.67■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms