RNA–Protein interactions for RNA: ENST00000477537.1

HLA-DMB-260, Transcript of major histocompatibility complex, class II, DM beta, humanhuman

Gene HLA-DMB, Length 1,919 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMB-260ENST00000477537 ATL3Q6DD88 541 aa12.89□□□□□ -0.35
HLA-DMB-260ENST00000477537 USP28Q96RU2 1077 aa12.89□□□□□ -0.35
HLA-DMB-260ENST00000477537 USP25Q9UHP3 1055 aa12.89□□□□□ -0.35
HLA-DMB-260ENST00000477537 PNPLA7Q6ZV29 1317 aa12.89□□□□□ -0.35
HLA-DMB-260ENST00000477537 TNS1Q9HBL0 1735 aaKnown RBP12.89□□□□□ -0.35
HLA-DMB-260ENST00000477537 WTIPA6NIX2 430 aaPredicted RBP12.88□□□□□ -0.35
HLA-DMB-260ENST00000477537 CYP7A1P22680 504 aa12.88□□□□□ -0.35
HLA-DMB-260ENST00000477537 TDO2P48775 406 aa12.88□□□□□ -0.35
HLA-DMB-260ENST00000477537 METAP2P50579 478 aaKnown RBP eCLIP12.88□□□□□ -0.35
HLA-DMB-260ENST00000477537 UBE4AQ14139 1066 aa12.88□□□□□ -0.35
HLA-DMB-260ENST00000477537 CKAP2LQ8IYA6 745 aa12.88□□□□□ -0.35
HLA-DMB-260ENST00000477537 MIGA1Q8NAN2 632 aa12.88□□□□□ -0.35
HLA-DMB-260ENST00000477537 CELF1Q92879 486 aaKnown RBP12.88□□□□□ -0.35
HLA-DMB-260ENST00000477537 TMEM87BQ96K49 555 aa12.88□□□□□ -0.35
HLA-DMB-260ENST00000477537 SETDB2Q96T68 719 aa12.88□□□□□ -0.35
HLA-DMB-260ENST00000477537 NACAP1Q9BZK3 213 aa12.88□□□□□ -0.35
HLA-DMB-260ENST00000477537 NYXQ9GZU5 481 aa12.88□□□□□ -0.35
HLA-DMB-260ENST00000477537 SENP2Q9HC62 589 aa12.88□□□□□ -0.35
HLA-DMB-260ENST00000477537 MINPP1Q9UNW1 487 aa12.88□□□□□ -0.35
HLA-DMB-260ENST00000477537 ZNF804BA4D1E1 1349 aa12.88□□□□□ -0.35
HLA-DMB-260ENST00000477537 ZPR1O75312 459 aa12.88□□□□□ -0.35
HLA-DMB-260ENST00000477537 TMEM67Q5HYA8 995 aa12.88□□□□□ -0.35
HLA-DMB-260ENST00000477537 NFXL1Q6ZNB6 911 aa12.88□□□□□ -0.35
HLA-DMB-260ENST00000477537 IGDCC4Q8TDY8 1250 aa12.88□□□□□ -0.35
HLA-DMB-260ENST00000477537 RAI14Q9P0K7 980 aa12.88□□□□□ -0.35
HLA-DMB-260ENST00000477537 ABCF2Q9UG63 623 aa12.88□□□□□ -0.35
HLA-DMB-260ENST00000477537 CCNL1Q9UK58 526 aaPredicted RBP12.88□□□□□ -0.35
HLA-DMB-260ENST00000477537 NOL7Q9UMY1 257 aaKnown RBP12.88□□□□□ -0.35
HLA-DMB-260ENST00000477537 TACC3Q9Y6A5 838 aa12.88□□□□□ -0.35
HLA-DMB-260ENST00000477537 LY75O60449 1722 aa12.88□□□□□ -0.35
HLA-DMB-260ENST00000477537 TIAM2Q8IVF5 1701 aa12.88□□□□□ -0.35
HLA-DMB-260ENST00000477537 APBA3O96018 575 aa12.87□□□□□ -0.35
HLA-DMB-260ENST00000477537 PTMAP06454 111 aaKnown RBP12.87□□□□□ -0.35
HLA-DMB-260ENST00000477537 RXRAP19793 462 aa12.87□□□□□ -0.35
HLA-DMB-260ENST00000477537 TYRO3Q06418 890 aa12.87□□□□□ -0.35
HLA-DMB-260ENST00000477537 CAVIN4Q5BKX8 364 aa12.87□□□□□ -0.35
HLA-DMB-260ENST00000477537 AKNAD1Q5T1N1 836 aa12.87□□□□□ -0.35
HLA-DMB-260ENST00000477537 APOA5Q6Q788 366 aa12.87□□□□□ -0.35
HLA-DMB-260ENST00000477537 MFSD6Q6ZSS7 791 aa12.87□□□□□ -0.35
HLA-DMB-260ENST00000477537 NBPF5PQ86XG9 351 aaPredicted RBP12.87□□□□□ -0.35
HLA-DMB-260ENST00000477537 CCAR1Q8IX12 1150 aaKnown RBP12.87□□□□□ -0.35
HLA-DMB-260ENST00000477537 FBXO18Q8NFZ0 1043 aa12.87□□□□□ -0.35
HLA-DMB-260ENST00000477537 CNNM2Q9H8M5 875 aa12.87□□□□□ -0.35
HLA-DMB-260ENST00000477537 LY9Q9HBG7 655 aa12.87□□□□□ -0.35
HLA-DMB-260ENST00000477537 COL24A1Q17RW2 1714 aa12.87□□□□□ -0.35
HLA-DMB-260ENST00000477537 COL1A1P02452 1464 aaPredicted RBP12.86□□□□□ -0.35
HLA-DMB-260ENST00000477537 ZBTB43O43298 467 aa12.86□□□□□ -0.35
HLA-DMB-260ENST00000477537 KDM4AO75164 1064 aa12.86□□□□□ -0.35
HLA-DMB-260ENST00000477537 ADCY5O95622 1261 aa12.86□□□□□ -0.35
HLA-DMB-260ENST00000477537 RBM43Q6ZSC3 357 aaKnown RBP12.86□□□□□ -0.35
HLA-DMB-260ENST00000477537 ADGRA1Q86SQ6 560 aa12.86□□□□□ -0.35
HLA-DMB-260ENST00000477537 MICU3Q86XE3 530 aa12.86□□□□□ -0.35
HLA-DMB-260ENST00000477537 VPS37DQ86XT2 251 aa12.86□□□□□ -0.35
HLA-DMB-260ENST00000477537 KRT23Q9C075 422 aa12.86□□□□□ -0.35
HLA-DMB-260ENST00000477537 ZSWIM5Q9P217 1185 aa12.86□□□□□ -0.35
HLA-DMB-260ENST00000477537 MRVI1Q9Y6F6 885 aa12.86□□□□□ -0.35
HLA-DMB-260ENST00000477537 IFIT3O14879 490 aaKnown RBP12.86□□□□□ -0.35
HLA-DMB-260ENST00000477537 CDKL5O76039 1030 aa12.86□□□□□ -0.35
HLA-DMB-260ENST00000477537 CDC27P30260 824 aa12.86□□□□□ -0.35
HLA-DMB-260ENST00000477537 RRP12Q5JTH9 1297 aaKnown RBP12.86□□□□□ -0.35
HLA-DMB-260ENST00000477537 CCDC144CPQ8IYA2 1237 aa12.86□□□□□ -0.35
HLA-DMB-260ENST00000477537 CCDC24Q8N4L8 307 aa12.86□□□□□ -0.35
HLA-DMB-260ENST00000477537 STAG1Q8WVM7 1258 aa12.86□□□□□ -0.35
HLA-DMB-260ENST00000477537 NLRP3Q96P20 1036 aa12.86□□□□□ -0.35
HLA-DMB-260ENST00000477537 TOMM22Q9NS69 142 aa12.86□□□□□ -0.35
HLA-DMB-260ENST00000477537 LRRC4BQ9NT99 713 aa12.86□□□□□ -0.35
HLA-DMB-260ENST00000477537 GJB4Q9NTQ9 266 aa12.86□□□□□ -0.35
HLA-DMB-260ENST00000477537 EIF2AK3Q9NZJ5 1116 aaKnown RBP12.86□□□□□ -0.35
HLA-DMB-260ENST00000477537 RTCBQ9Y3I0 505 aaKnown RBP12.86□□□□□ -0.35
HLA-DMB-260ENST00000477537 ECM29Q5VYK3 1845 aa12.85□□□□□ -0.35
HLA-DMB-260ENST00000477537 MAGEB6P1A0A0J9YX57 407 aa12.85□□□□□ -0.35
HLA-DMB-260ENST00000477537 GOLGA8AA7E2F4 631 aa12.85□□□□□ -0.35
HLA-DMB-260ENST00000477537 POLR3DP05423 398 aaPredicted RBP12.85□□□□□ -0.35
HLA-DMB-260ENST00000477537 ME1P48163 572 aa12.85□□□□□ -0.35
HLA-DMB-260ENST00000477537 RPS8P62241 208 aaKnown RBP12.85□□□□□ -0.35
HLA-DMB-260ENST00000477537 CPLX2Q6PUV4 134 aaKnown RBP12.85□□□□□ -0.35
HLA-DMB-260ENST00000477537 SGMS1Q86VZ5 419 aa12.85□□□□□ -0.35
HLA-DMB-260ENST00000477537 STK11IPQ8N1F8 1099 aa12.85□□□□□ -0.35
HLA-DMB-260ENST00000477537 FAM84BQ96KN1 310 aaPredicted RBP12.85□□□□□ -0.35
HLA-DMB-260ENST00000477537 ALG1Q9BT22 464 aa12.85□□□□□ -0.35
HLA-DMB-260ENST00000477537 MYL10Q9BUA6 226 aa12.85□□□□□ -0.35
HLA-DMB-260ENST00000477537 GOLPH3LQ9H4A5 285 aa12.85□□□□□ -0.35
HLA-DMB-260ENST00000477537 RTEL1Q9NZ71 1219 aa12.85□□□□□ -0.35
HLA-DMB-260ENST00000477537 ZKSCAN5Q9Y2L8 839 aa12.85□□□□□ -0.35
HLA-DMB-260ENST00000477537 TAF1LQ8IZX4 1826 aa12.85□□□□□ -0.35
HLA-DMB-260ENST00000477537 CCDC69A6NI79 296 aa12.84□□□□□ -0.35
HLA-DMB-260ENST00000477537 LIFRP42702 1097 aa12.84□□□□□ -0.35
HLA-DMB-260ENST00000477537 PLCB2Q00722 1185 aa12.84□□□□□ -0.35
HLA-DMB-260ENST00000477537 CCDC73Q6ZRK6 1079 aa12.84□□□□□ -0.35
HLA-DMB-260ENST00000477537 BRAPQ7Z569 592 aa12.84□□□□□ -0.35
HLA-DMB-260ENST00000477537 AMIGO3Q86WK7 504 aa12.84□□□□□ -0.35
HLA-DMB-260ENST00000477537 PROM2Q8N271 834 aa12.84□□□□□ -0.35
HLA-DMB-260ENST00000477537 FAM200AQ8TCP9 573 aa12.84□□□□□ -0.35
HLA-DMB-260ENST00000477537 ARHGEF1Q92888 912 aaKnown RBP12.84□□□□□ -0.35
HLA-DMB-260ENST00000477537 SLC12A7Q9Y666 1083 aa12.84□□□□□ -0.35
HLA-DMB-260ENST00000477537 CACNA1SQ13698 1873 aa12.84□□□□□ -0.35
HLA-DMB-260ENST00000477537 KIF28PB7ZC32 967 aa12.84□□□□□ -0.35
HLA-DMB-260ENST00000477537 KLRK1P26718 216 aa12.84□□□□□ -0.35
HLA-DMB-260ENST00000477537 KIF23Q02241 960 aaPredicted RBP12.84□□□□□ -0.35
HLA-DMB-260ENST00000477537 PPARAQ07869 468 aa12.84□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms